Wall clock time and date at job start Tue Mar 31 2020 00:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50692 * 119.99765 * 2 1 4 4 N 1.46504 * 109.47058 * 125.00536 * 3 2 1 5 5 C 1.46842 * 124.36971 * 89.97257 * 4 3 2 6 6 C 1.54645 * 105.50620 * 163.16117 * 5 4 3 7 7 C 1.53903 * 101.58593 * 24.76952 * 6 5 4 8 8 C 1.53602 * 110.33109 * 216.22952 * 7 6 5 9 9 C 1.55307 * 102.79692 * 260.44708 * 8 7 6 10 10 C 1.54967 * 101.74193 * 324.95924 * 9 8 7 11 11 N 1.46651 * 110.87868 * 96.54488 * 7 6 5 12 12 C 1.46896 * 110.99906 * 244.26663 * 11 7 6 13 13 C 1.52996 * 109.47256 * 170.00041 * 12 11 7 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34660 * 124.36698 * 270.01879 * 4 3 2 23 23 O 1.21288 * 125.07369 * 0.83669 * 22 4 3 24 24 H 1.07995 * 119.99960 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99845 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00012 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47790 * 5.00350 * 3 2 1 28 28 H 1.08998 * 109.47307 * 244.99983 * 3 2 1 29 29 H 1.09001 * 110.24150 * 44.14895 * 5 4 3 30 30 H 1.09000 * 110.24259 * 282.16532 * 5 4 3 31 31 H 1.08997 * 111.00493 * 266.69544 * 6 5 4 32 32 H 1.08994 * 111.00345 * 142.84553 * 6 5 4 33 33 H 1.09007 * 110.74233 * 18.77447 * 8 7 6 34 34 H 1.08997 * 110.74552 * 141.93257 * 8 7 6 35 35 H 1.08997 * 110.97600 * 83.08050 * 9 8 7 36 36 H 1.09002 * 110.96755 * 206.80831 * 9 8 7 37 37 H 1.08998 * 110.37623 * 277.83651 * 10 9 8 38 38 H 1.09000 * 110.37356 * 155.49803 * 10 9 8 39 39 H 1.09004 * 109.46774 * 50.00240 * 12 11 7 40 40 H 1.09000 * 109.47723 * 290.00629 * 12 11 7 41 41 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 42 42 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3799 0.8501 1.0764 6 6 5.0789 1.4597 2.3139 7 6 3.8868 1.6911 3.2595 8 6 4.0881 2.9829 4.0657 9 6 4.6106 2.4585 5.4309 10 6 3.8259 1.1305 5.5799 11 7 3.7482 0.5806 4.2072 12 6 2.4827 -0.1353 3.9978 13 6 2.4826 -1.4233 4.8235 14 6 1.1846 -2.1580 4.6082 15 1 0.4347 -1.7475 3.9481 16 6 0.9567 -3.3574 5.2491 17 7 1.8700 -3.8574 6.0526 18 14 -0.6491 -4.2718 4.9763 19 1 -0.7919 -4.6022 3.5355 20 1 -0.6471 -5.5244 5.7740 21 1 -1.7850 -3.4157 5.4028 22 6 2.6880 1.8006 2.3561 23 8 1.6075 2.2443 2.6828 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 4.8631 1.1951 0.1623 30 1 4.4032 -0.2384 1.1284 31 1 5.5667 2.4014 2.0627 32 1 5.7901 0.7564 2.7468 33 1 4.8296 3.6241 3.5888 34 1 3.1434 3.5127 4.1882 35 1 5.6844 2.2752 5.3934 36 1 4.3630 3.1511 6.2354 37 1 2.8260 1.3222 5.9689 38 1 4.3632 0.4436 6.2338 39 1 2.3747 -0.3809 2.9413 40 1 1.6515 0.4968 4.3106 41 1 2.5906 -1.1776 5.8800 42 1 3.3137 -2.0554 4.5107 43 1 1.7095 -4.7010 6.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:48 Heat of formation + Delta-G solvation = -27.029157 kcal Electronic energy + Delta-G solvation = -23121.727049 eV Core-core repulsion = 19973.343819 eV Total energy + Delta-G solvation = -3148.383230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38161 -38.97384 -37.56296 -35.91189 -35.22558 -33.73502 -31.88751 -30.36954 -28.99589 -27.35289 -26.42051 -24.60704 -23.08668 -22.37509 -21.75964 -20.75942 -19.85142 -18.67315 -17.78390 -17.44667 -16.81306 -16.46905 -16.29030 -15.95202 -15.52364 -15.30157 -14.80772 -14.72211 -14.58140 -14.33193 -13.97905 -13.71531 -13.33038 -13.26311 -12.99282 -12.88175 -12.76338 -12.55606 -12.40576 -12.35884 -12.19217 -11.94077 -11.73486 -11.53828 -11.43132 -11.31999 -11.05436 -10.61236 -10.42317 -9.75332 -9.33257 -8.25797 -6.37077 1.11597 1.32731 1.36143 1.44279 1.46029 2.19559 2.34467 2.96903 3.06532 3.26669 3.54388 3.69610 3.89503 3.91563 4.09394 4.16160 4.21732 4.28287 4.35427 4.39997 4.49294 4.58335 4.64462 4.71587 4.81773 4.88316 4.90960 4.94022 4.97203 5.05672 5.14045 5.20696 5.29215 5.36681 5.54964 5.56278 5.59911 5.69061 5.73564 5.93748 6.05292 6.10025 6.22865 6.76456 7.10905 7.31118 8.85913 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.006873 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.666324 B = 4072.955868 C = 5415.771021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 C 0.154 3.846 4 N -0.614 5.614 5 C 0.098 3.902 6 C -0.104 4.104 7 C 0.052 3.948 8 C -0.118 4.118 9 C -0.109 4.109 10 C 0.034 3.966 11 N -0.498 5.498 12 C 0.082 3.918 13 C 0.047 3.953 14 C -0.547 4.547 15 H 0.044 0.956 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.272 1.272 22 C 0.507 3.493 23 O -0.575 6.575 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.020 0.980 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.001 0.999 41 H -0.007 1.007 42 H 0.001 0.999 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 13.449 -11.854 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C 0.033 3.967 4 N -0.347 5.347 5 C -0.024 4.024 6 C -0.142 4.142 7 C -0.041 4.041 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.093 4.093 11 N -0.223 5.223 12 C -0.046 4.046 13 C 0.009 3.991 14 C -0.585 4.585 15 H 0.062 0.938 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.198 1.198 22 C 0.295 3.705 23 O -0.454 6.454 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.019 0.981 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.105 13.169 -11.747 19.857 hybrid contribution -2.150 -0.592 0.403 2.266 sum 6.955 12.576 -11.344 18.309 Atomic orbital electron populations 1.23999 0.96263 1.02323 0.98949 1.23409 0.96609 0.99419 1.01241 1.20603 0.92050 0.94729 0.89345 1.48536 1.14652 1.60857 1.10625 1.22423 0.79367 0.99334 1.01239 1.22723 0.95246 1.03960 0.92250 1.22347 0.94810 0.93183 0.93749 1.22724 1.02065 0.94758 0.96141 1.22721 1.01079 0.94136 0.96719 1.23222 0.98790 0.97243 0.90074 1.63922 1.33523 1.21496 1.03328 1.22084 0.88245 0.95289 0.98974 1.18790 0.95362 0.91253 0.93649 1.21439 1.02856 1.06515 1.27733 0.93805 1.25860 1.00500 0.98043 0.94551 1.70074 1.35914 1.20345 1.30040 0.85583 0.79305 0.77923 0.78762 1.19123 1.19821 1.19759 1.21369 0.89304 0.75829 0.84041 1.90657 1.27694 1.48735 1.78325 0.88050 0.88231 0.87529 0.90889 0.85601 0.86197 0.92082 0.86348 0.87691 0.86547 0.92957 0.87897 0.89179 0.96179 0.90311 0.93054 0.98031 0.98899 0.98105 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.10 14.32 67.77 0.97 -4.13 16 2 C -0.19 -5.30 9.85 25.64 0.25 -5.05 16 3 C 0.15 3.71 6.37 85.63 0.55 4.25 16 4 N -0.61 -17.00 2.77 -822.48 -2.27 -19.28 16 5 C 0.10 1.99 7.36 86.87 0.64 2.63 16 6 C -0.10 -2.06 6.42 31.46 0.20 -1.85 16 7 C 0.05 1.56 0.99 3.27 0.00 1.56 16 8 C -0.12 -2.93 6.05 31.59 0.19 -2.74 16 9 C -0.11 -2.57 7.08 32.06 0.23 -2.34 16 10 C 0.03 1.21 5.82 86.75 0.51 1.71 16 11 N -0.50 -18.94 4.80 -841.81 -4.04 -22.98 16 12 C 0.08 3.98 3.66 86.30 0.32 4.30 16 13 C 0.05 2.69 5.02 29.85 0.15 2.84 16 14 C -0.55 -33.63 9.11 25.60 0.23 -33.40 16 15 H 0.04 2.70 7.74 -2.91 -0.02 2.67 16 16 C 0.01 0.55 5.46 84.66 0.46 1.02 16 17 N -0.92 -57.65 13.29 21.45 0.28 -57.36 16 18 Si 0.96 46.37 29.54 68.60 2.03 48.39 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 22 C 0.51 17.93 4.46 87.61 0.39 18.32 16 23 O -0.58 -25.55 16.07 -3.05 -0.05 -25.60 16 24 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 25 H 0.10 2.81 8.06 -2.91 -0.02 2.78 16 26 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 27 H 0.07 1.91 7.60 -2.39 -0.02 1.89 16 28 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.46 7.45 -2.39 -0.02 1.45 16 32 H 0.10 2.08 8.07 -2.39 -0.02 2.06 16 33 H 0.12 1.94 7.39 -2.38 -0.02 1.92 16 34 H 0.05 1.56 7.51 -2.39 -0.02 1.54 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.02 0.81 7.62 -2.39 -0.02 0.79 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 39 H 0.05 2.54 6.79 -2.38 -0.02 2.52 16 40 H 0.00 0.08 6.92 -2.39 -0.02 0.06 16 41 H -0.01 -0.45 7.51 -2.38 -0.02 -0.47 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 43 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -78.34 343.60 2.00 -76.34 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.96 Total: 13.36 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.09 Total: -12.88 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -6.03 Total: -99.62 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.34 2.00 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.312 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds