Wall clock time and date at job start Tue Mar 31 2020 00:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47093 * 125.00095 * 3 2 1 5 5 C 1.46852 * 124.36912 * 90.02498 * 4 3 2 6 6 C 1.54651 * 105.58109 * 196.93336 * 5 4 3 7 7 C 1.53860 * 101.58317 * 335.20394 * 6 5 4 8 8 C 1.53247 * 110.60545 * 144.18479 * 7 6 5 9 9 C 1.54805 * 104.80943 * 122.16962 * 8 7 6 10 10 C 1.54996 * 102.94326 * 21.89421 * 9 8 7 11 11 N 1.47079 * 110.70724 * 263.77810 * 7 6 5 12 12 C 1.46898 * 111.00000 * 93.72367 * 11 7 6 13 13 C 1.53002 * 109.47189 * 170.00107 * 12 11 7 14 14 C 1.50700 * 109.47174 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99863 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00446 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99604 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47422 * 89.99944 * 18 16 14 20 20 H 1.48503 * 109.46894 * 209.99745 * 18 16 14 21 21 H 1.48500 * 109.47060 * 329.99342 * 18 16 14 22 22 C 1.34865 * 124.48762 * 270.04833 * 4 3 2 23 23 O 1.21286 * 125.04404 * 359.08528 * 22 4 3 24 24 H 1.07993 * 119.99888 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99804 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99804 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47241 * 5.00430 * 3 2 1 28 28 H 1.08996 * 109.47388 * 245.00379 * 3 2 1 29 29 H 1.09002 * 110.24118 * 77.88183 * 5 4 3 30 30 H 1.08998 * 110.23629 * 315.98342 * 5 4 3 31 31 H 1.09003 * 110.99850 * 93.27501 * 6 5 4 32 32 H 1.09000 * 111.00648 * 217.09078 * 6 5 4 33 33 H 1.08998 * 110.37387 * 240.99993 * 8 7 6 34 34 H 1.09000 * 110.36859 * 3.33869 * 8 7 6 35 35 H 1.08994 * 110.71940 * 140.26315 * 9 8 7 36 36 H 1.09002 * 110.71778 * 263.53339 * 9 8 7 37 37 H 1.08999 * 110.64778 * 81.51373 * 10 9 8 38 38 H 1.09003 * 110.64425 * 204.42057 * 10 9 8 39 39 H 1.09000 * 109.46960 * 290.00233 * 12 11 7 40 40 H 1.09000 * 109.47291 * 50.00443 * 12 11 7 41 41 H 1.09004 * 109.46801 * 299.99995 * 13 12 11 42 42 H 1.08998 * 109.47152 * 59.99674 * 13 12 11 43 43 H 0.96995 * 119.99946 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3803 0.8511 1.0762 6 6 4.8160 0.6699 2.5490 7 6 3.8769 1.6511 3.2719 8 6 3.4603 1.0924 4.6368 9 6 3.9151 2.1631 5.6581 10 6 4.0211 3.4450 4.7933 11 7 4.5458 2.9417 3.4958 12 6 4.2505 3.8834 2.4077 13 6 4.7490 5.2783 2.7910 14 6 4.4467 6.2442 1.6745 15 1 3.9484 5.8979 0.7811 16 6 4.8062 7.5699 1.7936 17 7 5.4125 7.9917 2.8818 18 14 4.4308 8.7673 0.4099 19 1 3.0903 9.3688 0.6258 20 1 5.4575 9.8401 0.3915 21 1 4.4462 8.0451 -0.8875 22 6 2.6898 1.8003 2.3590 23 8 1.6191 2.2715 2.6792 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 5.0153 1.5869 0.5829 30 1 4.4282 -0.1017 0.5489 31 1 4.6450 -0.3532 2.8839 32 1 5.8594 0.9543 2.6855 33 1 2.3790 0.9625 4.6796 34 1 3.9651 0.1457 4.8293 35 1 3.1697 2.2882 6.4435 36 1 4.8847 1.9034 6.0831 37 1 3.0401 3.9011 4.6603 38 1 4.7159 4.1550 5.2421 39 1 4.7524 3.5556 1.4974 40 1 3.1744 3.9163 2.2376 41 1 4.2470 5.6060 3.7014 42 1 5.8251 5.2454 2.9612 43 1 5.6650 8.9244 2.9657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:52 Heat of formation + Delta-G solvation = -4.152700 kcal Electronic energy + Delta-G solvation = -22956.797920 eV Core-core repulsion = 19809.406687 eV Total energy + Delta-G solvation = -3147.391233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16681 -37.56860 -36.29981 -34.46243 -33.69707 -31.94464 -30.89246 -28.48537 -27.70688 -26.35041 -24.48684 -23.27117 -21.74000 -21.27286 -19.89723 -19.86317 -18.48704 -16.80730 -16.50155 -15.92679 -15.49437 -15.18130 -14.71073 -14.48231 -14.39634 -13.98886 -13.72968 -13.43576 -13.04188 -12.65359 -12.44825 -12.31744 -12.16567 -11.72968 -11.70422 -11.44395 -11.31648 -11.06536 -10.87137 -10.79846 -10.72977 -10.51669 -10.44993 -10.03941 -9.79346 -9.45966 -9.35275 -9.13077 -8.60755 -8.34145 -7.86052 -5.99165 -4.01229 2.03045 2.78126 3.24599 3.32764 3.38628 3.41742 4.27642 4.46868 4.48586 4.64070 4.78166 4.86538 5.00981 5.02098 5.22012 5.26288 5.36720 5.37095 5.37891 5.55745 5.64306 5.76036 5.83375 5.91378 5.94399 6.00645 6.07766 6.16264 6.23798 6.40203 6.43405 6.46744 6.52409 6.54671 6.68589 6.91209 7.23247 7.35798 7.40845 7.72283 7.84881 8.04160 8.38283 8.43095 9.04628 9.62205 11.12300 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.005879 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.676137 B = 4761.335935 C = 5890.649979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.174 4.174 3 C 0.152 3.848 4 N -0.618 5.618 5 C 0.101 3.899 6 C -0.115 4.115 7 C 0.059 3.941 8 C -0.110 4.110 9 C -0.122 4.122 10 C 0.038 3.962 11 N -0.483 5.483 12 C 0.043 3.957 13 C 0.028 3.972 14 C -0.519 4.519 15 H 0.052 0.948 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.516 3.484 23 O -0.525 6.525 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -18.691 -1.436 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C 0.030 3.970 4 N -0.353 5.353 5 C -0.022 4.022 6 C -0.153 4.153 7 C -0.034 4.034 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.089 4.089 11 N -0.208 5.208 12 C -0.084 4.084 13 C -0.009 4.009 14 C -0.558 4.558 15 H 0.070 0.930 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.303 3.697 23 O -0.400 6.400 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.866 -18.314 -1.253 18.579 hybrid contribution -1.074 0.857 -1.037 1.721 sum -3.940 -17.458 -2.290 18.043 Atomic orbital electron populations 1.23889 0.95908 1.02028 0.99300 1.23287 0.96303 0.98784 1.00973 1.20426 0.92101 0.95723 0.88760 1.48390 1.12875 1.62924 1.11066 1.22182 0.82019 0.99632 0.98343 1.22627 1.01441 0.98277 0.92983 1.22135 0.91404 0.94639 0.95267 1.22291 1.01498 0.98872 0.92185 1.22543 1.01328 0.94858 0.97234 1.23275 0.99701 0.96543 0.89429 1.65072 1.50673 1.01215 1.03831 1.22681 0.98456 0.94840 0.92418 1.19117 0.97041 0.87860 0.96919 1.21134 1.38334 0.93568 1.02800 0.92981 1.24967 0.95142 0.98294 0.95763 1.69962 1.40648 1.15887 1.26724 0.86605 0.78039 0.80886 0.82546 1.20680 1.21141 1.19930 1.21311 0.89057 0.76036 0.83341 1.90691 1.26592 1.44435 1.78280 0.88430 0.88269 0.87391 0.89651 0.89581 0.90649 0.90825 0.90198 0.87921 0.90996 0.90642 0.91213 0.90783 0.93070 0.89179 0.91927 0.94953 0.96285 0.95705 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 14.32 29.01 0.42 -1.42 16 2 C -0.17 -1.92 9.85 -36.03 -0.35 -2.28 16 3 C 0.15 1.94 6.39 -5.20 -0.03 1.91 16 4 N -0.62 -8.98 2.92 -173.81 -0.51 -9.49 16 5 C 0.10 1.18 6.84 -2.98 -0.02 1.16 16 6 C -0.12 -1.36 6.33 -25.42 -0.16 -1.52 16 7 C 0.06 0.93 0.79 -132.18 -0.10 0.82 16 8 C -0.11 -1.51 6.18 -25.65 -0.16 -1.66 16 9 C -0.12 -1.69 7.07 -24.73 -0.17 -1.87 16 10 C 0.04 0.69 5.11 -1.75 -0.01 0.68 16 11 N -0.48 -8.98 5.03 -216.77 -1.09 -10.07 16 12 C 0.04 0.95 4.16 -3.82 -0.02 0.94 16 13 C 0.03 0.75 4.65 -27.88 -0.13 0.62 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.52 9.13 4.46 -11.05 -0.05 9.08 16 23 O -0.53 -11.25 16.58 5.55 0.09 -11.15 16 24 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 25 H 0.10 1.10 7.84 -52.49 -0.41 0.69 16 26 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 27 H 0.09 1.26 7.59 -51.93 -0.39 0.86 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.93 7.46 -51.93 -0.39 0.54 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.75 7.57 -51.93 -0.39 0.36 16 32 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 34 H 0.07 0.82 7.40 -51.93 -0.38 0.44 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 38 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 39 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 40 H 0.03 0.79 5.91 -51.93 -0.31 0.48 16 41 H 0.02 0.53 6.81 -51.93 -0.35 0.18 16 42 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -33.40 341.12 -8.97 -42.38 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.12 Total: -0.15 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.21 Total: -7.32 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.86 Total: -45.96 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.40 -8.97 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.225 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds