Wall clock time and date at job start Tue Mar 31 2020 00:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47093 * 125.00095 * 3 2 1 5 5 C 1.46852 * 124.36912 * 90.02498 * 4 3 2 6 6 C 1.54651 * 105.58109 * 196.93336 * 5 4 3 7 7 C 1.53860 * 101.58317 * 335.20394 * 6 5 4 8 8 C 1.53247 * 110.60545 * 144.18479 * 7 6 5 9 9 C 1.54805 * 104.80943 * 122.16962 * 8 7 6 10 10 C 1.54996 * 102.94326 * 21.89421 * 9 8 7 11 11 N 1.47079 * 110.70724 * 263.77810 * 7 6 5 12 12 C 1.46898 * 111.00000 * 93.72367 * 11 7 6 13 13 C 1.53002 * 109.47189 * 170.00107 * 12 11 7 14 14 C 1.50700 * 109.47174 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99863 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00446 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99604 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47422 * 89.99944 * 18 16 14 20 20 H 1.48503 * 109.46894 * 209.99745 * 18 16 14 21 21 H 1.48500 * 109.47060 * 329.99342 * 18 16 14 22 22 C 1.34865 * 124.48762 * 270.04833 * 4 3 2 23 23 O 1.21286 * 125.04404 * 359.08528 * 22 4 3 24 24 H 1.07993 * 119.99888 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99804 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99804 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47241 * 5.00430 * 3 2 1 28 28 H 1.08996 * 109.47388 * 245.00379 * 3 2 1 29 29 H 1.09002 * 110.24118 * 77.88183 * 5 4 3 30 30 H 1.08998 * 110.23629 * 315.98342 * 5 4 3 31 31 H 1.09003 * 110.99850 * 93.27501 * 6 5 4 32 32 H 1.09000 * 111.00648 * 217.09078 * 6 5 4 33 33 H 1.08998 * 110.37387 * 240.99993 * 8 7 6 34 34 H 1.09000 * 110.36859 * 3.33869 * 8 7 6 35 35 H 1.08994 * 110.71940 * 140.26315 * 9 8 7 36 36 H 1.09002 * 110.71778 * 263.53339 * 9 8 7 37 37 H 1.08999 * 110.64778 * 81.51373 * 10 9 8 38 38 H 1.09003 * 110.64425 * 204.42057 * 10 9 8 39 39 H 1.09000 * 109.46960 * 290.00233 * 12 11 7 40 40 H 1.09000 * 109.47291 * 50.00443 * 12 11 7 41 41 H 1.09004 * 109.46801 * 299.99995 * 13 12 11 42 42 H 1.08998 * 109.47152 * 59.99674 * 13 12 11 43 43 H 0.96995 * 119.99946 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3803 0.8511 1.0762 6 6 4.8160 0.6699 2.5490 7 6 3.8769 1.6511 3.2719 8 6 3.4603 1.0924 4.6368 9 6 3.9151 2.1631 5.6581 10 6 4.0211 3.4450 4.7933 11 7 4.5458 2.9417 3.4958 12 6 4.2505 3.8834 2.4077 13 6 4.7490 5.2783 2.7910 14 6 4.4467 6.2442 1.6745 15 1 3.9484 5.8979 0.7811 16 6 4.8062 7.5699 1.7936 17 7 5.4125 7.9917 2.8818 18 14 4.4308 8.7673 0.4099 19 1 3.0903 9.3688 0.6258 20 1 5.4575 9.8401 0.3915 21 1 4.4462 8.0451 -0.8875 22 6 2.6898 1.8003 2.3590 23 8 1.6191 2.2715 2.6792 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 5.0153 1.5869 0.5829 30 1 4.4282 -0.1017 0.5489 31 1 4.6450 -0.3532 2.8839 32 1 5.8594 0.9543 2.6855 33 1 2.3790 0.9625 4.6796 34 1 3.9651 0.1457 4.8293 35 1 3.1697 2.2882 6.4435 36 1 4.8847 1.9034 6.0831 37 1 3.0401 3.9011 4.6603 38 1 4.7159 4.1550 5.2421 39 1 4.7524 3.5556 1.4974 40 1 3.1744 3.9163 2.2376 41 1 4.2470 5.6060 3.7014 42 1 5.8251 5.2454 2.9612 43 1 5.6650 8.9244 2.9657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:51 Heat of formation + Delta-G solvation = -26.952076 kcal Electronic energy + Delta-G solvation = -22957.786575 eV Core-core repulsion = 19809.406687 eV Total energy + Delta-G solvation = -3148.379888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.43895 -38.90894 -37.58563 -35.88498 -35.23715 -33.80148 -31.96947 -30.35293 -28.88557 -27.41749 -26.40803 -24.64750 -23.25261 -22.40679 -21.45980 -20.84501 -19.82079 -18.67641 -17.78075 -17.43622 -16.86879 -16.45865 -16.38397 -16.10975 -15.49668 -15.32134 -14.92337 -14.57721 -14.53533 -14.33885 -13.82178 -13.64949 -13.55397 -13.36731 -12.97566 -12.79160 -12.69555 -12.55487 -12.36837 -12.26558 -12.18062 -12.03246 -11.80902 -11.57462 -11.35013 -11.30785 -11.11357 -10.61360 -10.45209 -9.74461 -9.42085 -8.25783 -6.37529 1.14740 1.34461 1.36517 1.44560 1.47469 2.18117 2.35144 2.94540 3.07212 3.34496 3.47651 3.67867 3.89163 3.93217 4.08177 4.13085 4.19837 4.32376 4.34430 4.37927 4.42824 4.58056 4.66730 4.70788 4.75762 4.88546 4.91618 4.93798 4.96672 5.05344 5.15450 5.18932 5.25697 5.35784 5.52283 5.55680 5.59294 5.68316 5.75198 5.86194 6.00496 6.07583 6.20542 6.76587 7.09770 7.31191 8.86293 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.005879 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.676137 B = 4761.335935 C = 5890.649979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.144 3.856 4 N -0.614 5.614 5 C 0.095 3.905 6 C -0.105 4.105 7 C 0.049 3.951 8 C -0.105 4.105 9 C -0.109 4.109 10 C 0.032 3.968 11 N -0.480 5.480 12 C 0.069 3.931 13 C 0.039 3.961 14 C -0.547 4.547 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.964 3.036 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.263 1.263 22 C 0.501 3.499 23 O -0.578 6.578 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.005 0.995 41 H -0.010 1.010 42 H 0.003 0.997 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -21.298 -2.477 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.023 3.977 4 N -0.347 5.347 5 C -0.027 4.027 6 C -0.143 4.143 7 C -0.045 4.045 8 C -0.143 4.143 9 C -0.147 4.147 10 C -0.096 4.096 11 N -0.205 5.205 12 C -0.059 4.059 13 C 0.001 3.999 14 C -0.586 4.586 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.199 1.199 21 H -0.187 1.187 22 C 0.288 3.712 23 O -0.457 6.457 24 H 0.139 0.861 25 H 0.102 0.898 26 H 0.151 0.849 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.009 0.991 42 H 0.021 0.979 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.912 -20.959 -2.322 21.174 hybrid contribution -1.378 1.689 -0.708 2.292 sum -3.290 -19.270 -3.030 19.782 Atomic orbital electron populations 1.24052 0.96133 1.02468 0.98838 1.23292 0.96303 0.98456 1.01302 1.20567 0.91999 0.96021 0.89118 1.48577 1.14220 1.61562 1.10327 1.22464 0.79890 1.01343 0.98973 1.22720 1.00557 0.98895 0.92081 1.22428 0.91654 0.93617 0.96760 1.22349 1.01118 1.00320 0.90554 1.22530 1.03152 0.92162 0.96874 1.23267 0.97096 0.98689 0.90578 1.65069 1.51054 1.01776 1.02559 1.22194 0.96297 0.93493 0.93878 1.18910 0.95203 0.90453 0.95320 1.21499 1.38905 0.94777 1.03377 0.93146 1.25907 0.94564 1.00188 0.98528 1.70085 1.41214 1.16634 1.28714 0.85470 0.78084 0.78329 0.79320 1.20154 1.19912 1.18721 1.21755 0.88914 0.75718 0.84770 1.90650 1.28754 1.46847 1.79475 0.86107 0.89826 0.84873 0.92857 0.87283 0.91491 0.86526 0.86409 0.87345 0.92412 0.86414 0.89989 0.88320 0.96818 0.90832 0.91334 0.97686 0.99128 0.97885 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.17 -3.52 9.85 25.64 0.25 -3.26 16 3 C 0.14 3.61 6.39 85.63 0.55 4.16 16 4 N -0.61 -17.18 2.92 -822.15 -2.40 -19.58 16 5 C 0.09 1.91 6.84 86.87 0.59 2.51 16 6 C -0.10 -2.07 6.33 31.45 0.20 -1.88 16 7 C 0.05 1.46 0.79 3.06 0.00 1.46 16 8 C -0.11 -2.64 6.18 31.29 0.19 -2.45 16 9 C -0.11 -2.91 7.07 31.89 0.23 -2.68 16 10 C 0.03 1.21 5.11 86.63 0.44 1.65 16 11 N -0.48 -18.15 5.03 -839.73 -4.22 -22.37 16 12 C 0.07 3.21 4.16 86.30 0.36 3.57 16 13 C 0.04 2.17 4.65 29.85 0.14 2.31 16 14 C -0.55 -32.98 9.11 25.60 0.23 -32.75 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 18 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.50 17.87 4.46 87.58 0.39 18.26 16 23 O -0.58 -26.08 16.58 -3.05 -0.05 -26.13 16 24 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 25 H 0.08 1.92 7.84 -2.91 -0.02 1.90 16 26 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 27 H 0.05 1.66 7.59 -2.38 -0.02 1.64 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 1.49 7.46 -2.39 -0.02 1.47 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 1.51 7.57 -2.39 -0.02 1.49 16 32 H 0.11 2.11 8.07 -2.39 -0.02 2.09 16 33 H 0.06 1.64 7.44 -2.39 -0.02 1.62 16 34 H 0.12 1.98 7.40 -2.39 -0.02 1.96 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.01 0.61 7.98 -2.39 -0.02 0.59 16 38 H 0.07 2.97 7.72 -2.39 -0.02 2.96 16 39 H 0.07 3.05 7.07 -2.39 -0.02 3.03 16 40 H 0.01 0.26 5.91 -2.39 -0.01 0.25 16 41 H -0.01 -0.59 6.81 -2.39 -0.02 -0.60 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.60 341.12 1.62 -75.99 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.97 Total: 12.59 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 5.01 Total: -10.84 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -6.34 Total: -99.42 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -77.60 1.62 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.033 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds