Wall clock time and date at job start Tue Mar 31 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99450 * 2 1 4 4 N 1.46499 * 109.47117 * 125.00245 * 3 2 1 5 5 C 1.46907 * 124.37778 * 89.99678 * 4 3 2 6 6 C 1.54767 * 105.53835 * 163.22455 * 5 4 3 7 7 C 1.53360 * 101.43454 * 24.28989 * 6 5 4 8 8 C 1.53317 * 111.50153 * 98.54529 * 7 6 5 9 9 C 1.54275 * 104.79794 * 141.00505 * 8 7 6 10 10 N 1.48016 * 107.03083 * 1.99831 * 9 8 7 11 11 C 1.46893 * 111.00156 * 214.40294 * 10 9 8 12 12 C 1.53004 * 109.47094 * 175.70754 * 11 10 9 13 13 C 1.50698 * 109.47388 * 174.86221 * 12 11 10 14 14 H 1.08004 * 119.99966 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00169 * 180.27830 * 13 12 11 16 16 N 1.31519 * 119.99814 * 359.72350 * 15 13 12 17 17 Si 1.86796 * 120.00100 * 179.72457 * 15 13 12 18 18 H 1.48503 * 109.47304 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47261 * 120.00124 * 17 15 13 20 20 H 1.48497 * 109.47303 * 239.99949 * 17 15 13 21 21 C 1.48785 * 106.00152 * 335.02897 * 10 9 8 22 22 C 1.34837 * 124.37652 * 269.99582 * 4 3 2 23 23 O 1.21278 * 125.18519 * 1.18653 * 22 4 3 24 24 H 1.07997 * 120.00325 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99690 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00279 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47365 * 4.99554 * 3 2 1 28 28 H 1.08998 * 109.46588 * 244.99881 * 3 2 1 29 29 H 1.09003 * 110.23499 * 44.20670 * 5 4 3 30 30 H 1.09004 * 110.23264 * 282.24114 * 5 4 3 31 31 H 1.09001 * 111.02995 * 266.25710 * 6 5 4 32 32 H 1.08995 * 111.06673 * 142.34517 * 6 5 4 33 33 H 1.09000 * 110.37226 * 22.17165 * 8 7 6 34 34 H 1.09002 * 110.37267 * 259.83649 * 8 7 6 35 35 H 1.08997 * 109.92603 * 242.65349 * 9 8 7 36 36 H 1.08999 * 109.92384 * 121.34106 * 9 8 7 37 37 H 1.08999 * 109.47468 * 55.71196 * 11 10 9 38 38 H 1.08995 * 109.47206 * 295.70757 * 11 10 9 39 39 H 1.09005 * 109.47071 * 54.86064 * 12 11 10 40 40 H 1.08998 * 109.47272 * 294.86485 * 12 11 10 41 41 H 0.97005 * 119.99682 * 179.97438 * 16 15 13 42 42 H 1.09000 * 110.68481 * 156.20271 * 21 10 9 43 43 H 1.08997 * 110.68289 * 279.38336 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 4.3806 0.8507 1.0765 6 6 5.0799 1.4591 2.3159 7 6 3.8880 1.6984 3.2507 8 6 3.7474 0.5722 4.2815 9 6 3.3422 1.2833 5.5893 10 7 3.2168 2.7249 5.2779 11 6 3.6384 3.5485 6.4188 12 6 3.5968 5.0262 6.0241 13 6 3.9068 5.8769 7.2288 14 1 4.1132 5.4103 8.1807 15 6 3.9217 7.2510 7.1170 16 7 3.6708 7.8192 5.9577 17 14 4.2983 8.3057 8.6120 18 1 4.5430 7.4304 9.7864 19 1 5.5062 9.1276 8.3463 20 1 3.1445 9.1977 8.8919 21 6 4.0870 2.9664 4.0955 22 6 2.6877 1.8018 2.3577 23 8 1.6065 2.2407 2.6881 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3584 2.1317 0.0895 28 1 2.6211 1.4027 -0.9314 29 1 4.8640 1.1970 0.1630 30 1 4.4040 -0.2379 1.1269 31 1 5.5744 2.3975 2.0646 32 1 5.7851 0.7529 2.7540 33 1 4.6979 0.0544 4.4098 34 1 2.9710 -0.1286 3.9744 35 1 4.1106 1.1326 6.3475 36 1 2.3869 0.8952 5.9425 37 1 4.6542 3.2779 6.7067 38 1 2.9650 3.3778 7.2587 39 1 2.6036 5.2745 5.6498 40 1 4.3361 5.2153 5.2458 41 1 3.6809 8.7860 5.8791 42 1 3.7568 3.8493 3.5483 43 1 5.1291 3.0674 4.3987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:54 Heat of formation + Delta-G solvation = -30.143690 kcal Electronic energy + Delta-G solvation = -22201.475446 eV Core-core repulsion = 19052.957159 eV Total energy + Delta-G solvation = -3148.518287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09992 -39.20024 -37.48265 -36.13411 -35.19079 -33.53040 -31.70798 -29.92335 -29.23858 -27.51435 -26.35908 -24.66652 -22.97823 -22.31269 -21.56844 -20.76514 -19.93319 -18.58350 -17.68075 -17.33291 -16.57716 -16.51221 -16.23569 -15.96254 -15.57744 -15.12942 -14.96610 -14.60471 -14.44207 -14.34283 -13.88740 -13.59973 -13.44817 -13.28990 -13.24630 -12.93740 -12.68525 -12.57294 -12.43428 -12.31860 -12.25041 -11.88168 -11.77110 -11.56041 -11.34852 -11.22786 -10.77219 -10.59017 -10.29142 -9.65845 -9.19201 -8.21672 -6.34327 1.19241 1.38365 1.40228 1.53535 1.59462 2.25071 2.39196 3.06724 3.11295 3.34672 3.50165 3.59408 3.91558 3.94850 4.09436 4.17778 4.21388 4.37168 4.41222 4.44670 4.54517 4.58275 4.65046 4.71664 4.74094 4.76433 4.88457 4.92790 4.98736 5.00416 5.06904 5.15417 5.22531 5.42707 5.58184 5.60532 5.63914 5.77023 5.80691 6.02857 6.15938 6.19154 6.31647 6.82953 7.27025 7.35203 8.91046 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003796 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.441327 B = 7374.696568 C = 7650.452558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.622 5.622 5 C 0.104 3.896 6 C -0.115 4.115 7 C -0.100 4.100 8 C -0.091 4.091 9 C 0.032 3.968 10 N -0.538 5.538 11 C 0.073 3.927 12 C 0.037 3.963 13 C -0.544 4.544 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.280 1.280 21 C 0.071 3.929 22 C 0.521 3.479 23 O -0.561 6.561 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.058 0.942 39 H -0.021 1.021 40 H -0.007 1.007 41 H 0.264 0.736 42 H 0.040 0.960 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -21.020 -13.177 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C 0.026 3.974 4 N -0.355 5.355 5 C -0.017 4.017 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.129 4.129 9 C -0.096 4.096 10 N -0.263 5.263 11 C -0.055 4.055 12 C 0.000 4.000 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.205 1.205 21 C -0.058 4.058 22 C 0.309 3.691 23 O -0.438 6.438 24 H 0.104 0.896 25 H 0.133 0.867 26 H 0.147 0.853 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.077 0.923 39 H -0.002 1.002 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.702 -20.492 -13.258 24.686 hybrid contribution 0.259 1.130 0.828 1.425 sum 3.961 -19.362 -12.429 23.346 Atomic orbital electron populations 1.24045 0.96368 1.02350 0.99114 1.23363 0.96274 0.98971 1.01068 1.20574 0.92079 0.95548 0.89176 1.48604 1.14631 1.62058 1.10240 1.22436 0.78926 1.00419 0.99918 1.22689 0.95222 1.03615 0.93797 1.21458 0.95720 0.97209 0.96020 1.22211 1.03901 0.95354 0.91390 1.23001 1.00965 0.87564 0.98052 1.64766 1.51298 1.04957 1.05239 1.22137 0.97231 0.93789 0.92353 1.18902 0.94374 0.91186 0.95576 1.21651 1.47803 0.92199 0.96540 0.91857 1.26054 0.94843 0.99709 0.99364 1.70151 1.50324 1.10691 1.26243 0.85301 0.77875 0.78290 0.78958 1.18285 1.19978 1.20545 1.22733 0.95546 0.96033 0.91443 1.20712 0.88775 0.75992 0.83587 1.90715 1.27908 1.46881 1.78279 0.89638 0.86727 0.85319 0.92513 0.86458 0.87828 0.88476 0.89796 0.85482 0.86335 0.90905 0.92299 0.91495 0.94884 0.92347 1.00236 0.98847 0.92766 0.94152 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.18 -3.15 9.85 25.65 0.25 -2.89 16 3 C 0.15 2.91 6.38 85.63 0.55 3.46 16 4 N -0.62 -13.94 2.93 -822.52 -2.41 -16.35 16 5 C 0.10 1.32 7.37 86.90 0.64 1.96 16 6 C -0.12 -1.80 6.26 31.32 0.20 -1.61 16 7 C -0.10 -2.68 0.73 -52.71 -0.04 -2.72 16 8 C -0.09 -2.06 6.16 31.13 0.19 -1.87 16 9 C 0.03 0.98 6.73 86.52 0.58 1.56 16 10 N -0.54 -22.31 5.36 -884.09 -4.74 -27.05 16 11 C 0.07 3.36 4.77 86.31 0.41 3.77 16 12 C 0.04 2.14 4.66 29.85 0.14 2.28 16 13 C -0.54 -32.61 9.11 25.60 0.23 -32.37 16 14 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.93 -59.71 13.29 21.45 0.28 -59.42 16 17 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C 0.07 2.63 4.10 86.16 0.35 2.98 16 22 C 0.52 17.01 6.68 87.42 0.58 17.59 16 23 O -0.56 -24.96 17.50 -3.02 -0.05 -25.01 16 24 H 0.09 1.83 7.84 -2.91 -0.02 1.81 16 25 H 0.11 1.73 8.06 -2.91 -0.02 1.70 16 26 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 27 H 0.06 1.45 7.61 -2.39 -0.02 1.43 16 28 H 0.12 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 1.40 7.95 -2.39 -0.02 1.38 16 32 H 0.13 1.13 7.45 -2.39 -0.02 1.11 16 33 H 0.12 1.72 7.44 -2.39 -0.02 1.70 16 34 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 35 H 0.06 1.61 7.67 -2.39 -0.02 1.59 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.42 7.97 -2.39 -0.02 1.40 16 38 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 39 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 40 H -0.01 -0.41 7.21 -2.39 -0.02 -0.43 16 41 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 42 H 0.04 1.82 7.71 -2.39 -0.02 1.80 16 43 H 0.06 2.10 7.92 -2.39 -0.02 2.09 16 Total: -1.00 -82.49 348.14 1.59 -80.90 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.96 Total: 9.10 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.52 Total: -9.97 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -6.86 Total: -102.82 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.49 1.59 -80.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.755 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds