Wall clock time and date at job start Tue Mar 31 2020 00:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00130 * 2 1 4 4 N 1.46496 * 109.47450 * 124.99531 * 3 2 1 5 5 C 1.46909 * 124.37778 * 270.02025 * 4 3 2 6 6 C 1.54764 * 105.53408 * 196.73627 * 5 4 3 7 7 C 1.53374 * 101.44159 * 335.68897 * 6 5 4 8 8 C 1.54164 * 111.12933 * 262.18560 * 7 6 5 9 9 C 1.55140 * 101.39183 * 205.17794 * 8 7 6 10 10 N 1.47956 * 105.03184 * 35.80790 * 9 8 7 11 11 C 1.46903 * 110.99946 * 213.83221 * 10 9 8 12 12 C 1.53000 * 109.47170 * 175.16484 * 11 10 9 13 13 C 1.50701 * 109.47256 * 174.67468 * 12 11 10 14 14 H 1.08004 * 119.99635 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00207 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99809 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47130 * 89.99975 * 17 15 13 19 19 H 1.48504 * 109.47008 * 210.00180 * 17 15 13 20 20 H 1.48496 * 109.47079 * 329.99680 * 17 15 13 21 21 C 1.47752 * 108.52539 * 336.07220 * 10 9 8 22 22 C 1.34829 * 124.37463 * 89.97650 * 4 3 2 23 23 O 1.21280 * 125.18455 * 358.89096 * 22 4 3 24 24 H 1.07993 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99785 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00043 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46812 * 5.00014 * 3 2 1 28 28 H 1.08997 * 109.47427 * 245.00387 * 3 2 1 29 29 H 1.08994 * 110.23559 * 315.75403 * 5 4 3 30 30 H 1.09009 * 110.23373 * 77.72127 * 5 4 3 31 31 H 1.09005 * 111.02844 * 217.65481 * 6 5 4 32 32 H 1.08994 * 111.03360 * 93.72908 * 6 5 4 33 33 H 1.08996 * 111.12688 * 87.13952 * 8 7 6 34 34 H 1.08995 * 111.02420 * 323.16757 * 8 7 6 35 35 H 1.09000 * 110.34369 * 276.88502 * 9 8 7 36 36 H 1.09002 * 110.34183 * 154.73038 * 9 8 7 37 37 H 1.09004 * 109.47232 * 295.16830 * 11 10 9 38 38 H 1.09000 * 109.46984 * 55.17315 * 11 10 9 39 39 H 1.08994 * 109.47238 * 294.67856 * 12 11 10 40 40 H 1.09007 * 109.46994 * 54.68110 * 12 11 10 41 41 H 0.96994 * 120.00288 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.98261 * 121.22042 * 21 10 9 43 43 H 1.09001 * 109.98258 * 242.50608 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6601 1.8434 2.4676 6 6 4.0176 2.0711 3.1751 7 6 4.9250 1.0976 2.4127 8 6 5.0899 -0.2276 3.1829 9 6 6.4552 -0.7283 2.6425 10 7 7.2649 0.4954 2.4525 11 6 8.1631 0.3585 1.2981 12 6 8.8939 1.6815 1.0607 13 6 9.9094 1.5043 -0.0385 14 1 10.0220 0.5441 -0.5200 15 6 10.6947 2.5679 -0.4296 16 7 10.5580 3.7370 0.1570 17 14 11.9530 2.3483 -1.7927 18 1 11.3226 2.6532 -3.1021 19 1 13.0944 3.2709 -1.5660 20 1 12.4425 0.9463 -1.7933 21 6 6.3492 1.6418 2.2778 22 6 4.2664 0.8897 1.0813 23 8 4.7977 0.3985 0.1080 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 2.1151 2.7838 2.3860 30 1 2.0679 1.1100 3.0150 31 1 3.9580 1.8051 4.2305 32 1 4.3557 3.0998 3.0510 33 1 4.2915 -0.9273 2.9363 34 1 5.1357 -0.0521 4.2577 35 1 6.3202 -1.2448 1.6922 36 1 6.9307 -1.3887 3.3677 37 1 8.8911 -0.4285 1.4955 38 1 7.5808 0.1013 0.4133 39 1 8.1743 2.4471 0.7707 40 1 9.3997 1.9866 1.9768 41 1 11.1102 4.4853 -0.1183 42 1 6.5368 2.3892 3.0488 43 1 6.4877 2.0821 1.2904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:58 Heat of formation + Delta-G solvation = -6.096906 kcal Electronic energy + Delta-G solvation = -22368.132348 eV Core-core repulsion = 19220.656808 eV Total energy + Delta-G solvation = -3147.475540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11383 -37.85392 -36.47766 -35.00894 -33.37495 -31.99752 -30.43137 -28.30568 -28.05066 -26.57623 -24.53995 -23.42785 -21.55536 -21.25275 -20.40307 -19.58828 -18.71427 -16.82560 -16.37612 -15.99526 -15.73600 -15.41251 -14.91525 -14.44277 -14.05448 -14.00963 -13.78498 -13.30704 -13.07883 -12.86756 -12.59270 -12.41302 -12.25234 -12.17058 -11.91739 -11.56362 -11.38895 -11.35649 -10.88893 -10.85757 -10.64918 -10.48938 -10.42271 -9.83272 -9.81870 -9.44727 -9.23341 -9.02849 -8.81474 -8.27148 -7.61245 -5.91995 -3.93044 1.85720 2.63956 3.05415 3.38225 3.43522 3.47917 4.23160 4.32891 4.49794 4.54837 4.62227 4.66167 4.78064 4.99757 5.00838 5.17826 5.19549 5.32763 5.43998 5.46170 5.48428 5.61045 5.65762 5.70656 5.81548 5.89074 6.06023 6.21980 6.22464 6.28741 6.32778 6.34221 6.51408 6.56254 6.68617 7.04375 7.08912 7.57410 7.60271 7.86081 7.98075 8.16337 8.25264 8.53352 9.13471 9.69793 11.19672 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.004196 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.990270 B = 6671.507139 C = 7150.734896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.152 3.848 4 N -0.624 5.624 5 C 0.106 3.894 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.101 4.101 9 C 0.040 3.960 10 N -0.524 5.524 11 C 0.055 3.945 12 C 0.026 3.974 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.068 3.932 22 C 0.531 3.469 23 O -0.510 6.510 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.015 0.985 40 H 0.024 0.976 41 H 0.259 0.741 42 H 0.082 0.918 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.530 -4.431 7.095 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.185 4.185 3 C 0.030 3.970 4 N -0.359 5.359 5 C -0.017 4.017 6 C -0.157 4.157 7 C -0.124 4.124 8 C -0.139 4.139 9 C -0.088 4.088 10 N -0.248 5.248 11 C -0.072 4.072 12 C -0.011 4.011 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.061 4.061 22 C 0.319 3.681 23 O -0.383 6.383 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.867 -4.435 6.924 22.429 hybrid contribution 0.060 -0.198 -1.552 1.566 sum -20.808 -4.633 5.372 21.984 Atomic orbital electron populations 1.23839 0.95600 1.01971 1.00734 1.23393 0.96162 0.99344 0.99641 1.20447 0.91714 0.95107 0.89700 1.48417 1.12338 1.63559 1.11561 1.22128 0.97738 0.99193 0.82646 1.22555 0.92968 1.00265 0.99871 1.21889 0.98153 0.98302 0.94048 1.22534 0.97833 0.93819 0.99728 1.23104 0.91775 0.93978 0.99964 1.63898 1.17335 1.01580 1.41944 1.22503 0.94210 1.01682 0.88793 1.19159 0.94596 0.90517 0.96849 1.21205 1.19166 0.96455 1.18734 0.92779 1.24985 0.97382 0.95286 0.96721 1.69972 1.40409 1.01132 1.41995 0.86596 0.81091 0.77974 0.82362 1.20756 1.21246 1.19866 1.22627 0.85849 0.94814 1.02763 1.20441 0.81386 0.76754 0.89548 1.90757 1.67668 1.43056 1.36830 0.88436 0.88329 0.87255 0.89992 0.89100 0.90542 0.91371 0.88835 0.89402 0.91408 0.89596 0.93454 0.90603 0.92109 0.95306 0.96639 0.95773 0.93122 0.89987 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 14.32 29.01 0.42 -0.98 16 2 C -0.17 -1.62 9.85 -36.03 -0.35 -1.98 16 3 C 0.15 1.59 6.38 -5.20 -0.03 1.56 16 4 N -0.62 -7.52 2.93 -173.92 -0.51 -8.03 16 5 C 0.11 0.91 7.37 -2.89 -0.02 0.89 16 6 C -0.12 -1.14 6.15 -25.61 -0.16 -1.30 16 7 C -0.12 -1.67 0.66 -155.18 -0.10 -1.77 16 8 C -0.10 -1.28 6.04 -24.99 -0.15 -1.43 16 9 C 0.04 0.64 6.66 -2.11 -0.01 0.63 16 10 N -0.52 -10.24 5.29 -231.55 -1.22 -11.47 16 11 C 0.06 1.29 4.79 -3.82 -0.02 1.27 16 12 C 0.03 0.72 4.62 -27.88 -0.13 0.59 16 13 C -0.52 -15.45 9.11 -34.44 -0.31 -15.76 16 14 H 0.05 1.58 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 17 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.07 1.22 5.25 -3.33 -0.02 1.20 16 22 C 0.53 8.49 6.59 -11.31 -0.07 8.41 16 23 O -0.51 -10.48 17.47 5.56 0.10 -10.38 16 24 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 25 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 26 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 27 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 28 H 0.09 1.11 7.95 -51.93 -0.41 0.69 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.09 0.70 7.63 -51.93 -0.40 0.30 16 32 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 33 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 34 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 35 H 0.05 0.85 7.70 -51.93 -0.40 0.45 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.03 0.71 7.97 -51.93 -0.41 0.30 16 39 H 0.02 0.45 6.39 -51.93 -0.33 0.12 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 43 H 0.07 1.54 5.69 -51.93 -0.30 1.24 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -34.54 346.40 -8.97 -43.51 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.20 Total: -2.33 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.07 Total: -7.05 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.00 Total: -46.49 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.10 Total: -10.38 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.54 -8.97 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.416 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds