Wall clock time and date at job start Tue Mar 31 2020 00:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00130 * 2 1 4 4 N 1.46496 * 109.47450 * 124.99531 * 3 2 1 5 5 C 1.46909 * 124.37778 * 270.02025 * 4 3 2 6 6 C 1.54764 * 105.53408 * 196.73627 * 5 4 3 7 7 C 1.53374 * 101.44159 * 335.68897 * 6 5 4 8 8 C 1.54164 * 111.12933 * 262.18560 * 7 6 5 9 9 C 1.55140 * 101.39183 * 205.17794 * 8 7 6 10 10 N 1.47956 * 105.03184 * 35.80790 * 9 8 7 11 11 C 1.46903 * 110.99946 * 213.83221 * 10 9 8 12 12 C 1.53000 * 109.47170 * 175.16484 * 11 10 9 13 13 C 1.50701 * 109.47256 * 174.67468 * 12 11 10 14 14 H 1.08004 * 119.99635 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00207 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99809 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47130 * 89.99975 * 17 15 13 19 19 H 1.48504 * 109.47008 * 210.00180 * 17 15 13 20 20 H 1.48496 * 109.47079 * 329.99680 * 17 15 13 21 21 C 1.47752 * 108.52539 * 336.07220 * 10 9 8 22 22 C 1.34829 * 124.37463 * 89.97650 * 4 3 2 23 23 O 1.21280 * 125.18455 * 358.89096 * 22 4 3 24 24 H 1.07993 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99785 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00043 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46812 * 5.00014 * 3 2 1 28 28 H 1.08997 * 109.47427 * 245.00387 * 3 2 1 29 29 H 1.08994 * 110.23559 * 315.75403 * 5 4 3 30 30 H 1.09009 * 110.23373 * 77.72127 * 5 4 3 31 31 H 1.09005 * 111.02844 * 217.65481 * 6 5 4 32 32 H 1.08994 * 111.03360 * 93.72908 * 6 5 4 33 33 H 1.08996 * 111.12688 * 87.13952 * 8 7 6 34 34 H 1.08995 * 111.02420 * 323.16757 * 8 7 6 35 35 H 1.09000 * 110.34369 * 276.88502 * 9 8 7 36 36 H 1.09002 * 110.34183 * 154.73038 * 9 8 7 37 37 H 1.09004 * 109.47232 * 295.16830 * 11 10 9 38 38 H 1.09000 * 109.46984 * 55.17315 * 11 10 9 39 39 H 1.08994 * 109.47238 * 294.67856 * 12 11 10 40 40 H 1.09007 * 109.46994 * 54.68110 * 12 11 10 41 41 H 0.96994 * 120.00288 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.98261 * 121.22042 * 21 10 9 43 43 H 1.09001 * 109.98258 * 242.50608 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6601 1.8434 2.4676 6 6 4.0176 2.0711 3.1751 7 6 4.9250 1.0976 2.4127 8 6 5.0899 -0.2276 3.1829 9 6 6.4552 -0.7283 2.6425 10 7 7.2649 0.4954 2.4525 11 6 8.1631 0.3585 1.2981 12 6 8.8939 1.6815 1.0607 13 6 9.9094 1.5043 -0.0385 14 1 10.0220 0.5441 -0.5200 15 6 10.6947 2.5679 -0.4296 16 7 10.5580 3.7370 0.1570 17 14 11.9530 2.3483 -1.7927 18 1 11.3226 2.6532 -3.1021 19 1 13.0944 3.2709 -1.5660 20 1 12.4425 0.9463 -1.7933 21 6 6.3492 1.6418 2.2778 22 6 4.2664 0.8897 1.0813 23 8 4.7977 0.3985 0.1080 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 2.1151 2.7838 2.3860 30 1 2.0679 1.1100 3.0150 31 1 3.9580 1.8051 4.2305 32 1 4.3557 3.0998 3.0510 33 1 4.2915 -0.9273 2.9363 34 1 5.1357 -0.0521 4.2577 35 1 6.3202 -1.2448 1.6922 36 1 6.9307 -1.3887 3.3677 37 1 8.8911 -0.4285 1.4955 38 1 7.5808 0.1013 0.4133 39 1 8.1743 2.4471 0.7707 40 1 9.3997 1.9866 1.9768 41 1 11.1102 4.4853 -0.1183 42 1 6.5368 2.3892 3.0488 43 1 6.4877 2.0821 1.2904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:57 Heat of formation + Delta-G solvation = -30.363557 kcal Electronic energy + Delta-G solvation = -22369.184628 eV Core-core repulsion = 19220.656808 eV Total energy + Delta-G solvation = -3148.527821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23942 -39.20838 -37.65110 -36.15176 -35.21113 -33.52337 -31.77839 -29.89553 -29.30484 -27.51076 -26.38042 -24.78426 -22.91956 -22.39681 -21.64203 -20.85121 -19.90607 -18.64283 -17.72812 -17.11453 -16.89519 -16.60113 -16.53376 -16.19042 -15.41798 -15.09920 -14.79770 -14.67206 -14.47301 -14.22119 -14.10375 -13.64332 -13.34119 -13.23612 -13.17168 -13.02129 -13.00646 -12.68594 -12.45011 -12.39716 -12.23771 -11.88286 -11.78162 -11.60020 -11.36467 -11.26321 -10.74654 -10.59052 -10.42364 -9.75871 -9.26884 -8.23807 -6.35152 1.15916 1.35626 1.38336 1.44696 1.49628 2.16985 2.37531 3.07796 3.09760 3.25582 3.41957 3.52201 3.88478 3.94494 4.00419 4.09260 4.30034 4.38089 4.41964 4.46088 4.50574 4.55969 4.66351 4.66602 4.70248 4.84242 4.89289 4.92681 4.99100 4.99814 5.08498 5.13806 5.19645 5.38387 5.48825 5.60761 5.62869 5.72756 5.76592 6.00654 6.05686 6.15499 6.27431 6.79195 7.11507 7.33053 8.88542 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.004196 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.990270 B = 6671.507139 C = 7150.734896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.194 4.194 3 C 0.149 3.851 4 N -0.617 5.617 5 C 0.103 3.897 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.085 4.085 9 C 0.033 3.967 10 N -0.529 5.529 11 C 0.077 3.923 12 C 0.040 3.960 13 C -0.550 4.550 14 H 0.053 0.947 15 C 0.003 3.997 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.264 1.264 21 C 0.067 3.933 22 C 0.515 3.485 23 O -0.576 6.576 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.021 0.979 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.003 0.997 39 H -0.011 1.011 40 H 0.000 1.000 41 H 0.265 0.735 42 H 0.093 0.907 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 -4.402 8.715 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.214 4.214 3 C 0.028 3.972 4 N -0.350 5.350 5 C -0.018 4.018 6 C -0.148 4.148 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.094 4.094 10 N -0.252 5.252 11 C -0.052 4.052 12 C 0.003 3.997 13 C -0.588 4.588 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.188 1.188 21 C -0.061 4.061 22 C 0.304 3.696 23 O -0.455 6.455 24 H 0.139 0.861 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.040 0.960 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.022 0.978 39 H 0.007 0.993 40 H 0.019 0.981 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -23.243 -4.391 8.586 25.164 hybrid contribution 0.673 -0.171 -2.055 2.169 sum -22.570 -4.563 6.531 23.934 Atomic orbital electron populations 1.24078 0.94513 1.03595 0.96632 1.23132 0.96922 0.97851 1.03455 1.20577 0.91594 0.96976 0.88088 1.48603 1.11207 1.61716 1.13437 1.22466 0.97544 1.01245 0.80521 1.22651 0.91989 0.98863 1.01298 1.21864 0.96077 1.00153 0.94135 1.22566 0.95636 0.92918 1.01201 1.23242 0.93941 0.92695 0.99529 1.63878 1.18425 1.03726 1.39198 1.22067 0.94403 0.99111 0.89574 1.18933 0.93760 0.91859 0.95158 1.21596 1.20425 0.96902 1.19907 0.92878 1.25963 0.99487 0.94701 0.99351 1.70093 1.41345 1.01986 1.43392 0.85413 0.78201 0.78568 0.78659 1.19962 1.19879 1.18814 1.22584 0.88751 0.94524 1.00245 1.20921 0.82798 0.76387 0.89534 1.90713 1.69392 1.46269 1.39085 0.86130 0.87184 0.89784 0.86494 0.92235 0.87680 0.88675 0.85271 0.89544 0.89856 0.86076 0.96044 0.88527 0.92110 0.97829 0.99277 0.98143 0.92576 0.88919 0.95918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 14.32 67.78 0.97 -0.86 16 2 C -0.19 -3.62 9.85 25.65 0.25 -3.37 16 3 C 0.15 3.03 6.38 85.63 0.55 3.58 16 4 N -0.62 -14.30 2.93 -822.52 -2.41 -16.72 16 5 C 0.10 1.38 7.37 86.90 0.64 2.02 16 6 C -0.11 -1.77 6.15 31.32 0.19 -1.57 16 7 C -0.12 -3.22 0.66 -52.61 -0.03 -3.25 16 8 C -0.09 -1.98 6.04 31.72 0.19 -1.78 16 9 C 0.03 1.09 6.66 86.83 0.58 1.67 16 10 N -0.53 -21.53 5.29 -886.48 -4.69 -26.22 16 11 C 0.08 3.84 4.79 86.30 0.41 4.25 16 12 C 0.04 2.37 4.62 29.85 0.14 2.51 16 13 C -0.55 -34.41 9.11 25.60 0.23 -34.17 16 14 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -59.10 13.29 21.45 0.28 -58.81 16 17 Si 0.97 47.03 29.54 68.60 2.03 49.06 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.07 2.54 5.25 86.16 0.45 2.99 16 22 C 0.52 17.07 6.59 87.43 0.58 17.65 16 23 O -0.58 -25.85 17.47 -3.03 -0.05 -25.90 16 24 H 0.12 0.95 7.84 -2.91 -0.02 0.92 16 25 H 0.11 1.12 8.06 -2.91 -0.02 1.09 16 26 H 0.08 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.12 1.51 7.79 -2.38 -0.02 1.49 16 28 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.13 1.21 7.63 -2.38 -0.02 1.20 16 32 H 0.09 1.45 7.90 -2.39 -0.02 1.43 16 33 H 0.08 1.73 8.01 -2.39 -0.02 1.71 16 34 H 0.12 2.01 7.76 -2.39 -0.02 1.99 16 35 H 0.02 0.80 7.70 -2.39 -0.02 0.79 16 36 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.00 0.19 7.97 -2.39 -0.02 0.17 16 39 H -0.01 -0.70 6.39 -2.39 -0.02 -0.71 16 40 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.09 3.20 7.79 -2.38 -0.02 3.18 16 43 H 0.02 1.06 5.69 -2.39 -0.01 1.05 16 Total: -1.00 -82.52 346.40 1.73 -80.79 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.96 Total: 7.49 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.61 Total: -9.70 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -6.82 Total: -101.74 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -82.52 1.73 -80.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.425 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds