Wall clock time and date at job start Tue Mar 31 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 N 1.46898 * 109.46931 * 180.02562 * 3 2 1 5 5 C 1.48107 * 110.99707 * 169.99797 * 4 3 2 6 6 C 1.53293 * 85.92352 * 222.87256 * 5 4 3 7 7 C 1.52335 * 128.80491 * 243.48442 * 6 5 4 8 8 C 1.52327 * 128.80587 * 163.14314 * 6 5 4 9 9 H 1.08997 * 117.52187 * 225.36308 * 8 6 5 10 10 C 1.50699 * 117.51671 * 10.44169 * 8 6 5 11 11 O 1.21280 * 120.00081 * 359.97438 * 10 8 6 12 12 N 1.34781 * 120.00312 * 179.97438 * 10 8 6 13 13 C 1.47580 * 134.49134 * 179.97438 * 12 10 8 14 14 C 1.53952 * 86.11500 * 155.36347 * 13 12 10 15 15 C 1.50695 * 113.74060 * 137.95290 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.47578 * 134.49101 * 0.02562 * 12 10 8 24 24 C 1.48104 * 111.00171 * 70.41199 * 4 3 2 25 25 H 1.08992 * 109.46935 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46800 * 300.00853 * 1 2 3 27 27 H 1.09000 * 109.46346 * 59.99937 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99807 * 2 1 3 29 29 H 1.09002 * 109.47167 * 119.99654 * 2 1 3 30 30 H 1.08991 * 109.47495 * 59.99907 * 3 2 1 31 31 H 1.09006 * 109.46832 * 299.99392 * 3 2 1 32 32 H 1.08995 * 113.79784 * 108.62461 * 5 4 3 33 33 H 1.08992 * 113.80122 * 337.12096 * 5 4 3 34 34 H 1.08992 * 117.51742 * 134.67916 * 7 6 5 35 35 H 1.09007 * 117.51250 * 349.55989 * 7 6 5 36 36 H 1.08998 * 113.77108 * 41.06531 * 13 12 10 37 37 H 1.08991 * 113.87349 * 269.67144 * 13 12 10 38 38 H 1.08997 * 113.74240 * 269.15892 * 14 13 12 39 39 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 40 40 H 1.08997 * 113.77175 * 90.33932 * 23 12 10 41 41 H 1.09004 * 113.76848 * 318.93948 * 23 12 10 42 42 H 1.08992 * 113.79987 * 22.87169 * 24 4 3 43 43 H 1.09001 * 113.79731 * 251.37450 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0397 2.8041 -0.2408 6 6 5.0464 2.1279 -1.1784 7 6 6.5636 2.0587 -1.0603 8 6 5.9158 2.7571 -2.2594 9 1 5.9646 2.2519 -3.2240 10 6 5.9847 4.2617 -2.3094 11 8 5.3610 4.9243 -1.5075 12 7 6.7392 4.8711 -3.2453 13 6 7.0331 6.2777 -3.5819 14 6 8.3363 5.7466 -4.2061 15 6 8.6825 6.3877 -5.5252 16 1 8.0365 7.1453 -5.9435 17 6 9.8243 6.0071 -6.1980 18 7 10.6108 5.0843 -5.6888 19 14 10.2539 6.8023 -7.8327 20 1 10.4204 8.2658 -7.6428 21 1 9.1623 6.5508 -8.8076 22 1 11.5209 6.2232 -8.3472 23 6 7.6027 4.3999 -4.3454 24 6 4.0393 0.9790 -1.3035 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 4.4951 3.2601 0.6383 33 1 3.3394 3.4655 -0.7507 34 1 7.0389 1.0937 -1.2359 35 1 7.0393 2.6876 -0.3077 36 1 7.1905 6.9142 -2.7112 37 1 6.3438 6.7111 -4.3065 38 1 9.1766 5.7212 -3.5124 39 1 10.3879 4.6716 -4.8397 40 1 7.0796 4.2808 -5.2943 41 1 8.2150 3.5367 -4.0845 42 1 3.3388 1.0963 -2.1303 43 1 4.4943 -0.0108 -1.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278192473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:35 Heat of formation + Delta-G solvation = 49.059498 kcal Electronic energy + Delta-G solvation = -21411.354772 eV Core-core repulsion = 18266.270993 eV Total energy + Delta-G solvation = -3145.083779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62097 -39.21630 -37.25557 -35.48013 -33.42015 -32.87984 -29.20560 -27.80725 -26.32114 -25.45490 -24.99127 -23.30031 -23.09569 -21.21861 -20.44521 -18.84722 -17.99965 -17.26719 -16.49771 -16.00936 -15.91697 -15.36925 -14.84678 -14.78543 -14.20751 -13.85158 -13.82618 -13.37748 -13.18646 -12.99042 -12.60746 -12.28365 -11.99612 -11.92825 -11.77312 -11.64542 -11.50917 -11.14783 -11.01519 -10.99935 -10.70965 -10.66306 -10.21863 -10.19423 -10.17339 -9.68318 -9.41677 -8.85859 -8.62923 -8.55308 -7.97643 -6.53494 -4.26912 2.83859 3.33453 3.36953 3.39021 3.56671 3.64043 4.05723 4.26715 4.42192 4.48323 4.65684 4.76310 4.83937 5.00025 5.11603 5.17050 5.20733 5.29249 5.31783 5.43035 5.48693 5.51615 5.62155 5.68964 5.74201 5.84836 5.86336 5.90186 5.94789 6.00557 6.02022 6.02935 6.15832 6.23309 6.23624 6.39944 6.44254 6.62183 6.94912 7.26488 7.96469 8.25066 8.37672 8.63569 8.71198 9.46030 10.85940 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.002966 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.063629 B = 9437.300888 C = 9496.400543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.019 3.981 4 N -0.481 5.481 5 C 0.063 3.937 6 C -0.136 4.136 7 C -0.111 4.111 8 C -0.167 4.167 9 H 0.121 0.879 10 C 0.554 3.446 11 O -0.561 6.561 12 N -0.635 5.635 13 C 0.112 3.888 14 C 0.014 3.986 15 C -0.597 4.597 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.903 5.903 19 Si 1.069 2.931 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.282 1.282 23 C 0.096 3.904 24 C 0.045 3.955 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -9.701 7.703 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.109 4.109 4 N -0.204 5.204 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.148 4.148 8 C -0.189 4.189 9 H 0.139 0.861 10 C 0.343 3.657 11 O -0.442 6.442 12 N -0.369 5.369 13 C -0.010 4.010 14 C -0.005 4.005 15 C -0.635 4.635 16 H 0.074 0.926 17 C -0.181 4.181 18 N -0.537 5.537 19 Si 0.897 3.103 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.207 1.207 23 C -0.027 4.027 24 C -0.084 4.084 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.597 -9.793 7.659 17.699 hybrid contribution -1.535 0.357 0.324 1.609 sum -14.132 -9.436 7.984 18.774 Atomic orbital electron populations 1.21745 0.95661 1.01696 1.01824 1.21468 0.95447 0.96244 1.02576 1.22692 0.89547 0.97416 1.01278 1.68589 1.08334 1.13793 1.29654 1.23315 0.94746 0.90436 0.97957 1.22541 0.92737 0.98678 0.99811 1.22717 0.92619 1.01552 0.97961 1.22142 1.07397 0.93193 0.96134 0.86149 1.19240 0.77733 0.87913 0.80767 1.90615 1.45411 1.66606 1.41539 1.50339 1.45564 1.10618 1.30338 1.23341 0.97334 0.82666 0.97619 1.20640 0.91788 0.90880 0.97215 1.21815 1.11294 1.25339 1.05021 0.92568 1.25888 0.92670 0.95642 1.03908 1.70818 1.38687 1.24282 1.19938 0.83532 0.76411 0.75729 0.74673 1.21279 1.21303 1.20704 1.23862 0.90191 1.01180 0.87418 1.23502 0.95089 0.97909 0.91858 0.92572 0.92655 0.92843 0.92118 0.91214 0.90616 0.94230 0.89116 0.90498 0.87518 0.87948 0.92036 0.90676 0.92766 0.91913 0.90383 0.92084 0.90937 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.03 6.00 -26.73 -0.16 -1.19 16 3 C 0.02 0.20 4.82 -3.83 -0.02 0.18 16 4 N -0.48 -5.80 6.26 -241.59 -1.51 -7.32 16 5 C 0.06 0.88 6.41 -3.01 -0.02 0.86 16 6 C -0.14 -1.84 3.03 -154.98 -0.47 -2.31 16 7 C -0.11 -1.47 10.24 -26.99 -0.28 -1.75 16 8 C -0.17 -2.55 5.94 -92.04 -0.55 -3.10 16 9 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 10 C 0.55 10.71 7.84 -10.98 -0.09 10.62 16 11 O -0.56 -12.10 15.86 5.56 0.09 -12.01 16 12 N -0.64 -12.85 3.61 -178.40 -0.64 -13.49 16 13 C 0.11 2.36 8.39 -2.97 -0.02 2.33 16 14 C 0.01 0.32 3.10 -90.83 -0.28 0.04 16 15 C -0.60 -15.31 8.77 -34.44 -0.30 -15.61 16 16 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 17 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 18 N -0.90 -25.20 13.65 55.43 0.76 -24.45 16 19 Si 1.07 23.39 29.90 -169.99 -5.08 18.30 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.10 1.98 8.12 -2.96 -0.02 1.96 16 24 C 0.04 0.51 7.11 -3.01 -0.02 0.48 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.41 7.70 -51.93 -0.40 0.01 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.14 7.67 -51.93 -0.40 0.75 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 38 H 0.05 1.34 7.61 -51.93 -0.40 0.95 16 39 H 0.27 7.44 7.04 -40.82 -0.29 7.15 16 40 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -28.82 352.78 -10.43 -39.26 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.40 Total: 2.05 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.96 Total: -7.65 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.40 Total: -45.26 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.82 -10.43 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.316 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds