Wall clock time and date at job start Tue Mar 31 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 N 1.46898 * 109.46931 * 180.02562 * 3 2 1 5 5 C 1.48107 * 110.99707 * 169.99797 * 4 3 2 6 6 C 1.53293 * 85.92352 * 222.87256 * 5 4 3 7 7 C 1.52335 * 128.80491 * 243.48442 * 6 5 4 8 8 C 1.52327 * 128.80587 * 163.14314 * 6 5 4 9 9 H 1.08997 * 117.52187 * 225.36308 * 8 6 5 10 10 C 1.50699 * 117.51671 * 10.44169 * 8 6 5 11 11 O 1.21280 * 120.00081 * 359.97438 * 10 8 6 12 12 N 1.34781 * 120.00312 * 179.97438 * 10 8 6 13 13 C 1.47580 * 134.49134 * 179.97438 * 12 10 8 14 14 C 1.53952 * 86.11500 * 155.36347 * 13 12 10 15 15 C 1.50695 * 113.74060 * 137.95290 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.47578 * 134.49101 * 0.02562 * 12 10 8 24 24 C 1.48104 * 111.00171 * 70.41199 * 4 3 2 25 25 H 1.08992 * 109.46935 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46800 * 300.00853 * 1 2 3 27 27 H 1.09000 * 109.46346 * 59.99937 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99807 * 2 1 3 29 29 H 1.09002 * 109.47167 * 119.99654 * 2 1 3 30 30 H 1.08991 * 109.47495 * 59.99907 * 3 2 1 31 31 H 1.09006 * 109.46832 * 299.99392 * 3 2 1 32 32 H 1.08995 * 113.79784 * 108.62461 * 5 4 3 33 33 H 1.08992 * 113.80122 * 337.12096 * 5 4 3 34 34 H 1.08992 * 117.51742 * 134.67916 * 7 6 5 35 35 H 1.09007 * 117.51250 * 349.55989 * 7 6 5 36 36 H 1.08998 * 113.77108 * 41.06531 * 13 12 10 37 37 H 1.08991 * 113.87349 * 269.67144 * 13 12 10 38 38 H 1.08997 * 113.74240 * 269.15892 * 14 13 12 39 39 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 40 40 H 1.08997 * 113.77175 * 90.33932 * 23 12 10 41 41 H 1.09004 * 113.76848 * 318.93948 * 23 12 10 42 42 H 1.08992 * 113.79987 * 22.87169 * 24 4 3 43 43 H 1.09001 * 113.79731 * 251.37450 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0397 2.8041 -0.2408 6 6 5.0464 2.1279 -1.1784 7 6 6.5636 2.0587 -1.0603 8 6 5.9158 2.7571 -2.2594 9 1 5.9646 2.2519 -3.2240 10 6 5.9847 4.2617 -2.3094 11 8 5.3610 4.9243 -1.5075 12 7 6.7392 4.8711 -3.2453 13 6 7.0331 6.2777 -3.5819 14 6 8.3363 5.7466 -4.2061 15 6 8.6825 6.3877 -5.5252 16 1 8.0365 7.1453 -5.9435 17 6 9.8243 6.0071 -6.1980 18 7 10.6108 5.0843 -5.6888 19 14 10.2539 6.8023 -7.8327 20 1 10.4204 8.2658 -7.6428 21 1 9.1623 6.5508 -8.8076 22 1 11.5209 6.2232 -8.3472 23 6 7.6027 4.3999 -4.3454 24 6 4.0393 0.9790 -1.3035 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 4.4951 3.2601 0.6383 33 1 3.3394 3.4655 -0.7507 34 1 7.0389 1.0937 -1.2359 35 1 7.0393 2.6876 -0.3077 36 1 7.1905 6.9142 -2.7112 37 1 6.3438 6.7111 -4.3065 38 1 9.1766 5.7212 -3.5124 39 1 10.3879 4.6716 -4.8397 40 1 7.0796 4.2808 -5.2943 41 1 8.2150 3.5367 -4.0845 42 1 3.3388 1.0963 -2.1303 43 1 4.4943 -0.0108 -1.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278192473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:35 Heat of formation + Delta-G solvation = 31.658529 kcal Electronic energy + Delta-G solvation = -21412.109335 eV Core-core repulsion = 18266.270993 eV Total energy + Delta-G solvation = -3145.838341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79400 -40.70219 -38.80710 -36.56143 -34.85773 -34.25090 -30.88494 -28.69088 -27.31713 -27.11253 -26.83574 -24.56356 -24.12183 -22.33648 -21.80165 -20.10593 -19.36935 -19.07634 -18.05485 -17.16381 -16.88073 -16.75718 -16.37444 -15.74494 -15.61245 -15.45806 -15.10729 -14.70215 -14.07555 -14.01592 -13.88676 -13.63524 -13.47601 -13.31899 -13.22767 -12.80950 -12.74295 -12.59043 -12.44872 -11.90878 -11.89921 -11.83656 -11.57978 -11.48356 -11.26800 -11.24113 -11.02467 -10.56215 -10.45741 -9.81696 -9.65595 -8.61307 -6.34892 1.39914 1.61191 1.66646 1.83618 1.86284 2.53439 2.61155 3.01197 3.10890 3.17413 3.43862 3.66174 3.78492 3.87275 4.07437 4.09355 4.15443 4.25550 4.35102 4.37904 4.46206 4.49249 4.50251 4.55304 4.58643 4.66829 4.72149 4.73561 4.74454 4.78364 4.82281 4.89333 4.97204 5.02559 5.14224 5.21082 5.30345 5.38316 5.41922 6.00346 6.02139 6.18993 6.58323 6.79355 7.09611 7.44773 8.79261 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.002966 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.063629 B = 9437.300888 C = 9496.400543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.018 3.982 4 N -0.484 5.484 5 C 0.059 3.941 6 C -0.135 4.135 7 C -0.100 4.100 8 C -0.180 4.180 9 H 0.136 0.864 10 C 0.549 3.451 11 O -0.588 6.588 12 N -0.638 5.638 13 C 0.115 3.885 14 C 0.002 3.998 15 C -0.605 4.605 16 H 0.055 0.945 17 C -0.021 4.021 18 N -0.929 5.929 19 Si 1.113 2.887 20 H -0.275 1.275 21 H -0.269 1.269 22 H -0.287 1.287 23 C 0.114 3.886 24 C 0.055 3.945 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 -11.202 7.160 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.110 4.110 4 N -0.206 5.206 5 C -0.069 4.069 6 C -0.136 4.136 7 C -0.137 4.137 8 C -0.201 4.201 9 H 0.154 0.846 10 C 0.340 3.660 11 O -0.470 6.470 12 N -0.371 5.371 13 C -0.007 4.007 14 C -0.017 4.017 15 C -0.643 4.643 16 H 0.073 0.927 17 C -0.221 4.221 18 N -0.565 5.565 19 Si 0.935 3.065 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.213 1.213 23 C -0.009 4.009 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.573 -11.301 7.133 19.048 hybrid contribution -1.287 0.875 0.591 1.664 sum -14.860 -10.426 7.724 19.727 Atomic orbital electron populations 1.21730 0.94607 1.02440 1.01937 1.21430 0.96317 0.94784 1.02635 1.22749 0.88426 0.98724 1.01114 1.68586 1.09568 1.12190 1.30290 1.23213 0.95030 0.91266 0.97441 1.22727 0.93210 0.99256 0.98454 1.22848 0.92628 1.02201 0.96030 1.22111 1.10004 0.90233 0.97802 0.84582 1.19966 0.76675 0.89711 0.79620 1.90601 1.46355 1.67759 1.42300 1.50325 1.46070 1.10041 1.30659 1.23223 0.96367 0.83515 0.97615 1.20584 0.92060 0.93013 0.96075 1.22106 1.11232 1.25158 1.05776 0.92690 1.27145 0.92761 0.95522 1.06631 1.70923 1.39654 1.25821 1.20116 0.82961 0.76392 0.75496 0.71653 1.20012 1.19431 1.21271 1.23568 0.89724 0.99871 0.87704 1.23568 0.94199 0.97903 0.91612 0.91513 0.92502 0.92821 0.91734 0.91406 0.90772 0.94494 0.90547 0.91970 0.84482 0.89101 0.92082 0.90109 0.95040 0.92892 0.90118 0.91212 0.90138 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.11 -1.71 6.00 30.60 0.18 -1.53 16 3 C 0.02 0.35 4.82 86.30 0.42 0.77 16 4 N -0.48 -10.92 6.26 -918.26 -5.75 -16.66 16 5 C 0.06 1.61 6.41 86.17 0.55 2.17 16 6 C -0.14 -3.43 3.03 -52.40 -0.16 -3.59 16 7 C -0.10 -2.45 10.24 30.42 0.31 -2.14 16 8 C -0.18 -5.22 5.94 -11.71 -0.07 -5.29 16 9 H 0.14 3.51 8.14 -2.39 -0.02 3.50 16 10 C 0.55 21.01 7.84 87.66 0.69 21.70 16 11 O -0.59 -25.55 15.86 -3.03 -0.05 -25.60 16 12 N -0.64 -25.62 3.61 -836.73 -3.02 -28.64 16 13 C 0.12 4.86 8.39 86.48 0.73 5.58 16 14 C 0.00 0.09 3.10 -10.87 -0.03 0.06 16 15 C -0.60 -31.02 8.77 25.60 0.22 -30.80 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 17 C -0.02 -1.09 5.46 84.66 0.46 -0.62 16 18 N -0.93 -52.17 13.65 21.45 0.29 -51.88 16 19 Si 1.11 46.41 29.90 68.60 2.05 48.46 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.11 4.64 8.12 86.49 0.70 5.34 16 24 C 0.06 1.10 7.11 86.17 0.61 1.71 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.93 7.54 -2.39 -0.02 0.91 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 0.73 7.70 -2.38 -0.02 0.71 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 1.88 7.67 -2.39 -0.02 1.86 16 34 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 3.30 8.09 -2.39 -0.02 3.28 16 38 H 0.03 1.61 7.61 -2.39 -0.02 1.59 16 39 H 0.26 14.62 7.04 -92.70 -0.65 13.97 16 40 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 41 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 42 H 0.08 1.50 7.79 -2.39 -0.02 1.48 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -61.39 352.78 -0.06 -61.45 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.08 Total: 20.66 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.33 Total: -7.79 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -8.47 Total: -97.18 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.05 Total: 48.46 kcal Total: -61.39 -0.06 -61.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.104 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds