Wall clock time and date at job start Tue Mar 31 2020 00:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 N 1.46899 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.48106 * 110.99904 * 189.99793 * 4 3 2 6 6 C 1.53286 * 85.92314 * 222.87272 * 5 4 3 7 7 C 1.52341 * 128.80117 * 243.48292 * 6 5 4 8 8 C 1.52336 * 128.80448 * 163.14691 * 6 5 4 9 9 H 1.09000 * 117.51503 * 10.38623 * 8 6 5 10 10 C 1.50700 * 117.51334 * 225.31336 * 8 6 5 11 11 O 1.21282 * 120.00222 * 359.97438 * 10 8 6 12 12 N 1.34780 * 120.00120 * 179.97438 * 10 8 6 13 13 C 1.47067 * 136.05152 * 359.63028 * 12 10 8 14 14 C 1.53503 * 87.98291 * 207.37706 * 13 12 10 15 15 C 1.50705 * 114.20461 * 220.34453 * 14 13 12 16 16 H 1.08000 * 119.99726 * 93.59837 * 15 14 13 17 17 C 1.37873 * 119.99976 * 273.59862 * 15 14 13 18 18 N 1.31519 * 120.00089 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00088 * 19 17 15 22 22 H 1.48506 * 109.47109 * 239.99751 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 12 10 8 24 24 C 1.48099 * 111.00180 * 90.41114 * 4 3 2 25 25 H 1.09000 * 109.47184 * 300.00569 * 1 2 3 26 26 H 1.09001 * 109.46940 * 60.00652 * 1 2 3 27 27 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 239.99431 * 2 1 3 29 29 H 1.09001 * 109.46940 * 119.99348 * 2 1 3 30 30 H 1.09000 * 109.47493 * 59.99620 * 3 2 1 31 31 H 1.09001 * 109.46618 * 299.99545 * 3 2 1 32 32 H 1.08995 * 113.79896 * 108.61920 * 5 4 3 33 33 H 1.09006 * 113.90511 * 337.13383 * 5 4 3 34 34 H 1.08999 * 117.51543 * 134.68514 * 7 6 5 35 35 H 1.08998 * 117.51388 * 349.55407 * 7 6 5 36 36 H 1.09003 * 113.46750 * 322.15352 * 13 12 10 37 37 H 1.09000 * 113.47312 * 92.59797 * 13 12 10 38 38 H 1.08998 * 114.20497 * 87.52255 * 14 13 12 39 39 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.46506 * 267.40576 * 23 12 10 41 41 H 1.09003 * 113.46351 * 37.77950 * 23 12 10 42 42 H 1.08998 * 113.80156 * 22.87142 * 24 4 3 43 43 H 1.09003 * 113.79900 * 251.37751 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0399 2.8041 0.2394 6 6 5.0465 2.4892 -0.8729 7 6 6.5637 2.3836 -0.7855 8 6 5.9161 3.4501 -1.6735 9 1 5.9653 4.4853 -1.3358 10 6 5.9842 3.2490 -3.1655 11 8 5.3607 2.3478 -3.6851 12 7 6.7381 4.0707 -3.9225 13 6 7.6015 5.2368 -3.6823 14 6 7.2841 5.6982 -5.1115 15 6 8.4651 6.2695 -5.8530 16 1 9.0643 5.6326 -6.4869 17 6 8.7808 7.6052 -5.7220 18 7 8.0515 8.3807 -4.9496 19 14 10.2443 8.3135 -6.6416 20 1 10.8957 7.2414 -7.4363 21 1 9.7825 9.3931 -7.5508 22 1 11.2188 8.8692 -5.6684 23 6 7.0538 4.2002 -5.3531 24 6 4.0392 1.4526 -1.3834 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 4.4951 2.9319 1.2214 33 1 3.3408 3.6016 -0.0128 34 1 7.0388 1.5368 -1.2807 35 1 7.0394 2.7172 0.1367 36 1 7.2191 5.9091 -2.9141 37 1 8.6495 4.9775 -3.5325 38 1 6.3842 6.3076 -5.1949 39 1 8.2739 9.3203 -4.8573 40 1 7.9559 3.6644 -5.6487 41 1 6.2062 3.9901 -6.0053 42 1 3.3387 1.8456 -2.1202 43 1 4.4940 0.5096 -1.6870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278192474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:39 Heat of formation + Delta-G solvation = 56.232341 kcal Electronic energy + Delta-G solvation = -21351.683235 eV Core-core repulsion = 18206.910494 eV Total energy + Delta-G solvation = -3144.772741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54532 -39.17239 -37.20977 -35.40102 -33.39551 -32.70437 -29.36782 -27.77103 -26.22667 -25.57270 -24.98364 -23.23517 -23.15177 -21.14692 -20.21825 -18.74324 -17.94000 -16.93255 -16.49717 -15.94665 -15.74239 -15.11629 -14.87102 -14.75653 -14.38830 -14.07401 -13.65242 -13.26337 -12.98551 -12.92907 -12.56395 -12.32666 -11.92996 -11.80344 -11.68908 -11.53760 -11.31841 -11.19755 -10.98479 -10.82762 -10.79893 -10.64739 -10.38404 -10.15487 -10.11308 -9.59126 -9.24241 -9.01598 -8.77690 -8.61277 -7.86633 -6.21193 -4.26671 2.93155 3.20878 3.29867 3.33032 3.40499 3.72338 4.10714 4.29206 4.34976 4.58005 4.72332 4.83368 4.93286 5.07577 5.09221 5.18881 5.25214 5.32945 5.44723 5.50620 5.52901 5.60328 5.66775 5.72203 5.82493 5.87222 5.94808 5.97913 6.07369 6.08625 6.11089 6.16788 6.25777 6.31183 6.42161 6.56500 6.64678 6.80965 7.00278 7.52632 7.76849 8.15423 8.51400 8.76992 8.78250 9.40376 10.88654 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040124 B = 0.002970 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.677885 B = 9425.169444 C = 9527.078169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.019 3.981 4 N -0.482 5.482 5 C 0.044 3.956 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.165 4.165 9 H 0.122 0.878 10 C 0.561 3.439 11 O -0.563 6.563 12 N -0.639 5.639 13 C 0.100 3.900 14 C 0.034 3.966 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.100 3.900 24 C 0.064 3.936 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 -10.224 11.004 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.110 4.110 4 N -0.205 5.205 5 C -0.084 4.084 6 C -0.139 4.139 7 C -0.149 4.149 8 C -0.186 4.186 9 H 0.140 0.860 10 C 0.350 3.650 11 O -0.444 6.444 12 N -0.372 5.372 13 C -0.023 4.023 14 C 0.015 3.985 15 C -0.554 4.554 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.022 4.022 24 C -0.064 4.064 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.445 -11.184 11.373 18.049 hybrid contribution 0.550 1.311 -0.888 1.676 sum -7.895 -9.873 10.485 16.424 Atomic orbital electron populations 1.21755 0.95859 1.01659 1.01687 1.21395 0.95018 0.96264 1.02655 1.22709 0.89532 0.97667 1.01065 1.68533 1.08390 1.23988 1.19549 1.23490 0.95129 0.91528 0.98265 1.22533 0.92652 0.99913 0.98765 1.22710 0.92720 0.99320 1.00181 1.22127 1.07127 0.97885 0.91489 0.85985 1.19042 0.79154 0.80206 0.86579 1.90615 1.46646 1.32902 1.74213 1.49927 1.44968 1.31335 1.10982 1.23603 0.92941 0.83164 1.02563 1.20355 0.98396 0.89111 0.90676 1.20949 1.11905 0.94322 1.28257 0.91764 1.25035 0.96676 0.96965 0.94907 1.69963 1.38675 1.06073 1.37597 0.86477 0.82331 0.79166 0.79710 1.19542 1.20863 1.20882 1.23336 0.98645 0.99588 0.80586 1.23393 0.94851 0.98397 0.89734 0.92824 0.92827 0.92612 0.91974 0.91381 0.91172 0.93816 0.89114 0.90852 0.88071 0.87586 0.92281 0.90754 0.91424 0.92679 0.90896 0.92533 0.90395 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.10 6.24 -26.73 -0.17 -1.27 16 3 C 0.02 0.20 4.80 -3.83 -0.02 0.18 16 4 N -0.48 -5.89 6.15 -241.61 -1.49 -7.38 16 5 C 0.04 0.51 7.96 -3.01 -0.02 0.48 16 6 C -0.14 -1.87 3.03 -154.98 -0.47 -2.34 16 7 C -0.11 -1.45 10.24 -26.99 -0.28 -1.73 16 8 C -0.16 -2.54 6.02 -92.03 -0.55 -3.09 16 9 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 10 C 0.56 10.93 7.86 -10.98 -0.09 10.85 16 11 O -0.56 -12.23 15.91 5.56 0.09 -12.14 16 12 N -0.64 -13.03 3.69 -185.23 -0.68 -13.71 16 13 C 0.10 2.08 7.99 -8.50 -0.07 2.01 16 14 C 0.03 0.79 3.78 -91.27 -0.35 0.44 16 15 C -0.52 -13.03 8.82 -34.44 -0.30 -13.33 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.91 13.26 55.43 0.74 -23.18 16 19 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.10 2.10 8.18 -8.52 -0.07 2.03 16 24 C 0.06 0.90 6.39 -3.01 -0.02 0.88 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.04 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 38 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.19 7.35 -51.93 -0.38 0.81 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -28.00 355.44 -10.62 -38.62 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.48 Total: 1.63 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.13 Total: -4.06 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -1.44 Total: -44.26 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.00 -10.62 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.851 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds