Wall clock time and date at job start Tue Mar 31 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 N 1.46899 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.48106 * 110.99904 * 189.99793 * 4 3 2 6 6 C 1.53286 * 85.92314 * 222.87272 * 5 4 3 7 7 C 1.52341 * 128.80117 * 243.48292 * 6 5 4 8 8 C 1.52336 * 128.80448 * 163.14691 * 6 5 4 9 9 H 1.09000 * 117.51503 * 10.38623 * 8 6 5 10 10 C 1.50700 * 117.51334 * 225.31336 * 8 6 5 11 11 O 1.21282 * 120.00222 * 359.97438 * 10 8 6 12 12 N 1.34780 * 120.00120 * 179.97438 * 10 8 6 13 13 C 1.47067 * 136.05152 * 359.63028 * 12 10 8 14 14 C 1.53503 * 87.98291 * 207.37706 * 13 12 10 15 15 C 1.50705 * 114.20461 * 220.34453 * 14 13 12 16 16 H 1.08000 * 119.99726 * 93.59837 * 15 14 13 17 17 C 1.37873 * 119.99976 * 273.59862 * 15 14 13 18 18 N 1.31519 * 120.00089 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00088 * 19 17 15 22 22 H 1.48506 * 109.47109 * 239.99751 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 12 10 8 24 24 C 1.48099 * 111.00180 * 90.41114 * 4 3 2 25 25 H 1.09000 * 109.47184 * 300.00569 * 1 2 3 26 26 H 1.09001 * 109.46940 * 60.00652 * 1 2 3 27 27 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 239.99431 * 2 1 3 29 29 H 1.09001 * 109.46940 * 119.99348 * 2 1 3 30 30 H 1.09000 * 109.47493 * 59.99620 * 3 2 1 31 31 H 1.09001 * 109.46618 * 299.99545 * 3 2 1 32 32 H 1.08995 * 113.79896 * 108.61920 * 5 4 3 33 33 H 1.09006 * 113.90511 * 337.13383 * 5 4 3 34 34 H 1.08999 * 117.51543 * 134.68514 * 7 6 5 35 35 H 1.08998 * 117.51388 * 349.55407 * 7 6 5 36 36 H 1.09003 * 113.46750 * 322.15352 * 13 12 10 37 37 H 1.09000 * 113.47312 * 92.59797 * 13 12 10 38 38 H 1.08998 * 114.20497 * 87.52255 * 14 13 12 39 39 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.46506 * 267.40576 * 23 12 10 41 41 H 1.09003 * 113.46351 * 37.77950 * 23 12 10 42 42 H 1.08998 * 113.80156 * 22.87142 * 24 4 3 43 43 H 1.09003 * 113.79900 * 251.37751 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0399 2.8041 0.2394 6 6 5.0465 2.4892 -0.8729 7 6 6.5637 2.3836 -0.7855 8 6 5.9161 3.4501 -1.6735 9 1 5.9653 4.4853 -1.3358 10 6 5.9842 3.2490 -3.1655 11 8 5.3607 2.3478 -3.6851 12 7 6.7381 4.0707 -3.9225 13 6 7.6015 5.2368 -3.6823 14 6 7.2841 5.6982 -5.1115 15 6 8.4651 6.2695 -5.8530 16 1 9.0643 5.6326 -6.4869 17 6 8.7808 7.6052 -5.7220 18 7 8.0515 8.3807 -4.9496 19 14 10.2443 8.3135 -6.6416 20 1 10.8957 7.2414 -7.4363 21 1 9.7825 9.3931 -7.5508 22 1 11.2188 8.8692 -5.6684 23 6 7.0538 4.2002 -5.3531 24 6 4.0392 1.4526 -1.3834 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 4.4951 2.9319 1.2214 33 1 3.3408 3.6016 -0.0128 34 1 7.0388 1.5368 -1.2807 35 1 7.0394 2.7172 0.1367 36 1 7.2191 5.9091 -2.9141 37 1 8.6495 4.9775 -3.5325 38 1 6.3842 6.3076 -5.1949 39 1 8.2739 9.3203 -4.8573 40 1 7.9559 3.6644 -5.6487 41 1 6.2062 3.9901 -6.0053 42 1 3.3387 1.8456 -2.1202 43 1 4.4940 0.5096 -1.6870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278192474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:38 Heat of formation + Delta-G solvation = 39.593719 kcal Electronic energy + Delta-G solvation = -21352.404740 eV Core-core repulsion = 18206.910494 eV Total energy + Delta-G solvation = -3145.494246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73350 -40.66883 -38.75841 -36.49792 -34.65373 -34.27500 -31.07052 -28.68829 -27.33824 -27.22270 -26.71199 -24.56335 -24.09356 -22.13552 -21.72543 -20.04013 -19.29007 -18.74714 -18.06563 -17.12482 -16.76255 -16.60097 -16.22922 -16.13924 -15.82719 -15.25378 -14.90772 -14.42631 -14.17741 -14.03413 -13.94320 -13.71287 -13.27699 -13.21212 -13.11410 -12.75862 -12.62233 -12.60720 -12.53024 -12.18598 -12.00309 -11.71553 -11.54513 -11.39390 -11.22975 -11.15957 -11.05621 -10.69686 -10.51569 -9.81494 -9.53769 -8.17301 -6.28301 1.46027 1.48260 1.50287 1.60273 1.92435 2.45472 2.59653 3.06587 3.12500 3.17521 3.49589 3.70529 3.86028 3.92867 4.11730 4.17947 4.26020 4.35951 4.38900 4.48973 4.50953 4.54319 4.56492 4.64399 4.68966 4.73145 4.75052 4.81877 4.85689 4.87796 4.94380 4.98699 5.02476 5.12662 5.14178 5.18057 5.37349 5.43389 5.58676 5.80969 6.05286 6.22662 6.80527 6.90665 7.18057 7.41930 8.92970 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040124 B = 0.002970 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.677885 B = 9425.169444 C = 9527.078169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.018 3.982 4 N -0.483 5.483 5 C 0.052 3.948 6 C -0.139 4.139 7 C -0.093 4.093 8 C -0.181 4.181 9 H 0.132 0.868 10 C 0.555 3.445 11 O -0.590 6.590 12 N -0.643 5.643 13 C 0.117 3.883 14 C 0.022 3.978 15 C -0.527 4.527 16 H 0.066 0.934 17 C 0.021 3.979 18 N -0.919 5.919 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.279 1.279 23 C 0.105 3.895 24 C 0.061 3.939 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -10.501 12.614 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.110 4.110 4 N -0.205 5.205 5 C -0.076 4.076 6 C -0.140 4.140 7 C -0.130 4.130 8 C -0.202 4.202 9 H 0.150 0.850 10 C 0.346 3.654 11 O -0.473 6.473 12 N -0.375 5.375 13 C -0.006 4.006 14 C 0.003 3.997 15 C -0.565 4.565 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.557 5.557 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.205 1.205 23 C -0.017 4.017 24 C -0.067 4.067 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.936 -11.475 12.990 19.063 hybrid contribution 0.318 1.338 -1.419 1.976 sum -7.618 -10.137 11.571 17.166 Atomic orbital electron populations 1.21728 0.94494 1.02344 1.02034 1.21375 0.96199 0.95515 1.02006 1.22772 0.88487 0.98375 1.01412 1.68538 1.09538 1.24671 1.17774 1.23574 0.94305 0.91200 0.98479 1.22739 0.93436 0.98913 0.98944 1.22859 0.92307 0.97590 1.00271 1.22075 1.10150 0.99251 0.88739 0.84972 1.19792 0.77959 0.79343 0.88263 1.90599 1.47450 1.34005 1.75208 1.49947 1.45335 1.31601 1.10645 1.23321 0.93339 0.83118 1.00792 1.20233 0.96822 0.89969 0.92704 1.21231 1.12246 0.94705 1.28293 0.91563 1.25764 0.99120 0.97361 0.95704 1.70064 1.40263 1.06338 1.39020 0.85489 0.79259 0.78325 0.78477 1.18844 1.21001 1.20466 1.23213 0.99017 0.98075 0.81422 1.23262 0.95082 0.97899 0.90485 0.91800 0.93131 0.91809 0.93387 0.91234 0.89557 0.94608 0.86824 0.90289 0.88752 0.84345 0.92132 0.90033 0.94424 0.92623 0.89852 0.92816 0.92285 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.11 -2.04 6.24 30.59 0.19 -1.85 16 3 C 0.02 0.35 4.80 86.30 0.41 0.77 16 4 N -0.48 -11.07 6.15 -918.33 -5.65 -16.72 16 5 C 0.05 1.07 7.96 86.17 0.69 1.76 16 6 C -0.14 -3.57 3.03 -52.39 -0.16 -3.73 16 7 C -0.09 -2.20 10.24 30.43 0.31 -1.89 16 8 C -0.18 -5.34 6.02 -11.71 -0.07 -5.41 16 9 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 10 C 0.55 21.57 7.86 87.66 0.69 22.26 16 11 O -0.59 -25.98 15.91 -3.04 -0.05 -26.02 16 12 N -0.64 -26.14 3.69 -858.34 -3.17 -29.31 16 13 C 0.12 4.84 7.99 83.18 0.66 5.50 16 14 C 0.02 1.04 3.78 -11.21 -0.04 1.00 16 15 C -0.53 -26.59 8.82 25.60 0.23 -26.36 16 16 H 0.07 3.25 7.81 -2.91 -0.02 3.22 16 17 C 0.02 1.06 5.46 84.65 0.46 1.53 16 18 N -0.92 -49.88 13.26 21.45 0.28 -49.60 16 19 Si 0.96 40.50 29.54 68.60 2.03 42.52 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.11 4.43 8.18 83.17 0.68 5.11 16 24 C 0.06 1.71 6.39 86.17 0.55 2.26 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.04 0.77 7.38 -2.39 -0.02 0.75 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.55 7.93 -2.38 -0.02 1.53 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.14 2.39 8.14 -2.39 -0.02 2.38 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 38 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 39 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 1.86 7.35 -2.39 -0.02 1.84 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -59.74 355.44 -0.28 -60.02 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.96 Total: 19.59 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.32 Total: -0.48 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -8.53 Total: -95.63 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -59.74 -0.28 -60.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.610 kcal (2) G-P(sol) polarization free energy of solvation -59.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds