Wall clock time and date at job start Tue Mar 31 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47277 * 2 1 4 4 N 1.46904 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.48035 * 111.46528 * 289.52443 * 4 3 2 6 6 C 1.54939 * 103.45618 * 200.58972 * 5 4 3 7 7 C 1.54561 * 102.94129 * 37.08366 * 6 5 4 8 8 H 1.08999 * 118.10425 * 117.55469 * 7 6 5 9 9 C 1.52939 * 118.19586 * 274.42586 * 7 6 5 10 10 C 1.47945 * 111.00073 * 171.53327 * 4 3 2 11 11 C 1.50694 * 117.37248 * 5.35643 * 10 4 3 12 12 O 1.21287 * 120.00068 * 248.15968 * 11 10 4 13 13 N 1.34777 * 120.00400 * 68.15872 * 11 10 4 14 14 C 1.47576 * 134.49566 * 175.93715 * 13 11 10 15 15 C 1.53948 * 86.11750 * 155.36212 * 14 13 11 16 16 C 1.50695 * 113.74278 * 137.95360 * 15 14 13 17 17 H 1.08001 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99965 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00103 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99965 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47463 * 89.99510 * 20 18 16 22 22 H 1.48497 * 109.46774 * 329.99548 * 20 18 16 23 23 H 1.48503 * 109.46958 * 210.00023 * 20 18 16 24 24 C 1.47588 * 134.48921 * 355.93653 * 13 11 10 25 25 H 1.09000 * 109.47388 * 60.00128 * 1 2 3 26 26 H 1.09003 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47432 * 299.99886 * 1 2 3 28 28 H 1.08999 * 109.47432 * 240.00114 * 2 1 3 29 29 H 1.09000 * 109.47388 * 119.99872 * 2 1 3 30 30 H 1.09000 * 109.47271 * 59.99962 * 3 2 1 31 31 H 1.09000 * 109.47285 * 299.99998 * 3 2 1 32 32 H 1.08996 * 110.88387 * 81.92701 * 5 4 3 33 33 H 1.08998 * 110.37154 * 319.01124 * 5 4 3 34 34 H 1.09001 * 110.72151 * 278.71863 * 6 5 4 35 35 H 1.09002 * 110.71705 * 155.44133 * 6 5 4 36 36 H 1.09001 * 117.45891 * 344.12106 * 9 7 6 37 37 H 1.09004 * 117.45317 * 199.35558 * 9 7 6 38 38 H 1.09005 * 113.76808 * 41.05843 * 14 13 11 39 39 H 1.08990 * 113.87422 * 269.67813 * 14 13 11 40 40 H 1.09002 * 113.74093 * 269.15425 * 15 14 13 41 41 H 0.96993 * 119.99536 * 0.02562 * 19 18 16 42 42 H 1.08999 * 113.76453 * 90.34261 * 24 13 11 43 43 H 1.08993 * 113.76812 * 318.94602 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0501 0.9823 1.2994 6 6 5.4948 1.5421 1.3067 7 6 5.3365 2.9176 0.6198 8 1 5.5757 3.8106 1.1973 9 6 5.3878 2.9727 -0.9077 10 6 4.0392 2.8086 -0.2027 11 6 3.0436 3.9391 -0.2453 12 8 2.8498 4.5377 -1.2821 13 7 2.3686 4.2849 0.8688 14 6 1.4072 5.3525 1.2060 15 6 0.9042 4.4063 2.3114 16 6 0.6254 5.0974 3.6212 17 1 0.7828 6.1618 3.7144 18 6 0.1693 4.3709 4.7006 19 7 -0.0229 3.0748 4.5869 20 14 -0.1769 5.2277 6.3240 21 1 -1.5895 5.6850 6.3511 22 1 0.7252 6.3984 6.4680 23 1 0.0584 4.2807 7.4435 24 6 2.2939 3.7479 2.2415 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 4.0592 -0.1063 1.3527 33 1 3.4708 1.4017 2.1219 34 1 6.1608 0.8985 0.7321 35 1 5.8573 1.6606 2.3279 36 1 5.7916 2.1045 -1.4287 37 1 5.5997 3.9373 -1.3690 38 1 0.6722 5.5449 0.4243 39 1 1.8730 6.2621 1.5848 40 1 0.0910 3.7536 1.9938 41 1 0.1566 2.6300 3.7439 42 1 3.0221 4.1853 2.9245 43 1 2.2671 2.6592 2.2864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278192737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:35 Heat of formation + Delta-G solvation = 15.408469 kcal Electronic energy + Delta-G solvation = -23298.834728 eV Core-core repulsion = 20152.291731 eV Total energy + Delta-G solvation = -3146.542997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17796 -40.16029 -38.73230 -36.42441 -34.89458 -33.05535 -31.67921 -30.52697 -27.31144 -26.92529 -26.38108 -24.59982 -23.69049 -22.34908 -21.78691 -21.44564 -19.55967 -18.98055 -18.41715 -17.40014 -16.88172 -16.44274 -16.08453 -15.88843 -15.59751 -15.45699 -14.84410 -14.46216 -14.33859 -14.23870 -13.78096 -13.72902 -13.59313 -13.27759 -13.03477 -12.89576 -12.86004 -12.52968 -12.35657 -12.15301 -12.00811 -11.92360 -11.87618 -11.59936 -11.54231 -11.41352 -10.88842 -10.59490 -10.47863 -9.83579 -9.39316 -8.64308 -6.38301 1.26234 1.58678 1.64704 1.66927 1.83007 2.42913 2.58097 2.69363 3.13543 3.21798 3.53823 3.62100 3.80541 3.89032 3.96357 4.05417 4.13440 4.20087 4.25206 4.30660 4.32181 4.41112 4.45360 4.49058 4.54024 4.61591 4.66823 4.74834 4.79763 4.83708 4.88826 4.96539 5.02415 5.04710 5.12495 5.20542 5.27808 5.31963 5.69908 5.82716 5.94761 6.15562 6.53165 6.65623 6.94215 7.41092 8.75460 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.006164 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.718257 B = 4541.417222 C = 4957.441270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.037 3.963 4 N -0.465 5.465 5 C 0.025 3.975 6 C -0.082 4.082 7 C -0.146 4.146 8 H 0.113 0.887 9 C -0.089 4.089 10 C -0.038 4.038 11 C 0.555 3.445 12 O -0.589 6.589 13 N -0.631 5.631 14 C 0.112 3.888 15 C 0.008 3.992 16 C -0.605 4.605 17 H 0.055 0.945 18 C -0.017 4.017 19 N -0.924 5.924 20 Si 1.114 2.886 21 H -0.278 1.278 22 H -0.271 1.271 23 H -0.284 1.284 24 C 0.114 3.886 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -6.033 -4.463 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.091 4.091 4 N -0.189 5.189 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.166 4.166 8 H 0.131 0.869 9 C -0.127 4.127 10 C -0.131 4.131 11 C 0.344 3.656 12 O -0.470 6.470 13 N -0.365 5.365 14 C -0.010 4.010 15 C -0.011 4.011 16 C -0.643 4.643 17 H 0.073 0.927 18 C -0.218 4.218 19 N -0.560 5.560 20 Si 0.936 3.064 21 H -0.204 1.204 22 H -0.196 1.196 23 H -0.209 1.209 24 C -0.008 4.008 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.401 -6.384 -4.046 12.062 hybrid contribution -0.318 1.154 -1.192 1.689 sum 9.083 -5.230 -5.237 11.717 Atomic orbital electron populations 1.21718 0.95354 1.02654 1.01031 1.21384 0.95670 0.94028 1.03143 1.22477 0.87577 0.99137 0.99878 1.64279 1.07625 1.15467 1.31517 1.23714 0.95343 1.02133 0.88968 1.22157 0.95660 0.92392 1.01730 1.23967 0.97546 1.01014 0.94051 0.86885 1.23218 0.91612 1.04448 0.93404 1.22747 0.89188 0.88146 1.13066 1.19936 0.79854 0.83912 0.81889 1.90605 1.67270 1.57550 1.31587 1.50414 1.43361 1.32050 1.10630 1.23291 0.89385 0.92438 0.95863 1.20523 0.92237 0.94043 0.94300 1.22095 1.49342 0.96292 0.96602 0.92650 1.27115 0.92643 0.95793 1.06215 1.70901 1.46568 1.10142 1.28376 0.82940 0.77226 0.74577 0.71610 1.20429 1.19569 1.20938 1.23725 0.99392 0.98636 0.79007 0.93227 0.90287 0.94373 0.90271 0.91111 0.94683 0.93796 0.87292 0.94585 0.88053 0.88556 0.85579 0.88006 0.92111 0.89684 0.95291 0.93035 0.90504 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.10 -2.80 6.00 30.59 0.18 -2.62 16 3 C 0.04 1.25 3.90 86.30 0.34 1.58 16 4 N -0.46 -13.85 5.17 -839.44 -4.34 -18.19 16 5 C 0.03 0.63 5.80 86.75 0.50 1.13 16 6 C -0.08 -1.66 6.86 31.79 0.22 -1.44 16 7 C -0.15 -3.69 6.92 -9.95 -0.07 -3.76 16 8 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 9 C -0.09 -2.28 9.96 30.59 0.30 -1.98 16 10 C -0.04 -1.24 2.58 2.93 0.01 -1.23 16 11 C 0.55 22.65 5.70 87.66 0.50 23.15 16 12 O -0.59 -27.87 17.75 -3.05 -0.05 -27.92 16 13 N -0.63 -25.99 3.13 -836.82 -2.62 -28.61 16 14 C 0.11 4.81 8.39 86.48 0.73 5.53 16 15 C 0.01 0.39 3.09 -10.88 -0.03 0.35 16 16 C -0.61 -30.93 8.77 25.60 0.22 -30.71 16 17 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 18 C -0.02 -0.90 5.46 84.65 0.46 -0.44 16 19 N -0.92 -51.21 13.65 21.45 0.29 -50.92 16 20 Si 1.11 46.21 29.90 68.60 2.05 48.26 16 21 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.11 4.74 7.17 86.48 0.62 5.36 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.77 7.32 -2.39 -0.02 1.75 16 30 H 0.04 1.34 4.28 -2.39 -0.01 1.33 16 31 H 0.04 1.68 7.43 -2.39 -0.02 1.66 16 32 H 0.11 2.27 7.80 -2.39 -0.02 2.26 16 33 H 0.04 1.07 5.55 -2.39 -0.01 1.05 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.09 3.49 8.09 -2.39 -0.02 3.47 16 40 H 0.03 1.50 7.61 -2.39 -0.02 1.48 16 41 H 0.26 14.44 7.04 -92.71 -0.65 13.79 16 42 H 0.08 3.19 8.09 -2.39 -0.02 3.17 16 43 H 0.07 2.81 3.82 -2.39 -0.01 2.80 16 Total: -1.00 -62.35 337.71 1.13 -61.22 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.11 Total: 24.53 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 4.70 Total: -8.37 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -6.67 Total: -97.71 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.05 Total: 48.26 kcal Total: -62.35 1.13 -61.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278192737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.626 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds