Wall clock time and date at job start Tue Mar 31 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 N 1.46897 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.46907 * 110.99968 * 179.97438 * 4 3 2 6 6 C 1.54412 * 129.01236 * 180.02562 * 5 4 3 7 7 C 1.54419 * 78.89086 * 180.64564 * 6 5 4 8 8 C 1.50703 * 129.01419 * 180.64405 * 7 6 5 9 9 O 1.21281 * 119.99538 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.47584 * 134.49063 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11565 * 204.63541 * 11 10 8 13 13 C 1.50699 * 113.73968 * 222.04272 * 12 11 10 14 14 H 1.07998 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99969 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99800 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47420 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46971 * 120.00705 * 17 15 13 20 20 H 1.48498 * 109.47283 * 240.00450 * 17 15 13 21 21 C 1.47577 * 134.49641 * 359.97438 * 10 8 7 22 22 C 1.54891 * 84.49409 * 43.15382 * 7 6 5 23 23 C 1.54885 * 84.49103 * 318.13307 * 7 6 5 24 24 H 1.09004 * 109.47284 * 300.00219 * 1 2 3 25 25 H 1.09002 * 109.47258 * 60.00316 * 1 2 3 26 26 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47412 * 240.00258 * 2 1 3 28 28 H 1.09002 * 109.47765 * 119.99834 * 2 1 3 29 29 H 1.08997 * 109.47495 * 60.00048 * 3 2 1 30 30 H 1.09002 * 109.46809 * 299.99959 * 3 2 1 31 31 H 1.00905 * 111.00263 * 56.04491 * 4 3 2 32 32 H 1.08992 * 114.93459 * 68.16028 * 6 5 4 33 33 H 1.08998 * 114.98218 * 293.12567 * 6 5 4 34 34 H 1.09001 * 113.76908 * 90.33461 * 11 10 8 35 35 H 1.08997 * 113.76763 * 318.93723 * 11 10 8 36 36 H 1.08997 * 113.73914 * 90.73986 * 12 11 10 37 37 H 0.97000 * 119.99858 * 179.97438 * 16 15 13 38 38 H 1.08995 * 113.76947 * 41.05826 * 21 10 8 39 39 H 1.09001 * 113.87193 * 269.67722 * 21 10 8 40 40 H 1.09001 * 114.98080 * 69.39259 * 22 7 6 41 41 H 1.09003 * 114.97457 * 204.56822 * 22 7 6 42 42 H 1.09008 * 114.97367 * 155.43371 * 23 7 6 43 43 H 1.08998 * 114.98354 * 290.60293 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0354 2.8140 -0.0013 6 6 5.5038 3.2915 -0.0025 7 6 4.7523 4.6404 0.0150 8 6 5.3135 6.0391 0.0142 9 8 6.5140 6.2107 -0.0015 10 7 4.4813 7.0990 0.0319 11 6 4.6706 8.5626 0.0364 12 6 3.2824 8.6350 0.6978 13 6 2.4099 9.7388 0.1577 14 1 2.7803 10.3872 -0.6224 15 6 1.1383 9.9200 0.6590 16 7 0.6870 9.1300 1.6086 17 14 0.0565 11.2877 -0.0109 18 1 0.7925 12.0290 -1.0664 19 1 -1.1803 10.7026 -0.5883 20 1 -0.3029 12.2183 1.0890 21 6 3.0148 7.2624 0.0536 22 6 3.8467 3.9521 1.0662 23 6 3.8173 3.9627 -1.0172 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.8702 0.9165 -0.7822 32 1 6.0537 3.0838 -0.9204 33 1 6.0623 3.0650 0.9056 34 1 4.7063 9.0041 -0.9596 35 1 5.4826 8.8986 0.6813 36 1 3.3134 8.6107 1.7870 37 1 -0.2074 9.2578 1.9615 38 1 2.5042 6.5598 0.7122 39 1 2.5629 7.3223 -0.9365 40 1 4.3226 3.7579 2.0274 41 1 2.8408 4.3641 1.1475 42 1 2.8095 4.3754 -1.0658 43 1 4.2658 3.7785 -1.9934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278193089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:53 Heat of formation + Delta-G solvation = 83.497153 kcal Electronic energy + Delta-G solvation = -21731.326344 eV Core-core repulsion = 18587.735894 eV Total energy + Delta-G solvation = -3143.590450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91203 -38.96053 -36.82256 -36.09305 -32.69678 -32.07930 -29.32472 -26.30172 -25.72239 -25.58032 -25.32044 -25.07185 -23.20654 -21.48046 -20.11910 -18.61696 -17.82733 -16.88215 -16.45494 -15.91910 -15.59971 -15.03490 -14.77723 -14.47282 -14.26303 -14.06965 -13.72381 -13.51792 -13.16035 -12.68312 -12.36041 -12.22671 -11.84926 -11.68677 -11.61304 -11.28539 -11.21112 -11.15293 -11.02379 -10.98594 -10.90245 -10.79373 -10.46062 -10.30721 -10.11056 -9.64791 -9.31251 -8.99611 -8.64402 -8.59149 -7.87885 -6.20991 -4.26516 2.96888 3.20501 3.29499 3.32402 3.38092 3.73304 4.18683 4.30834 4.34805 4.44793 4.63602 4.74782 4.76613 4.85731 5.00408 5.10042 5.17867 5.35418 5.49917 5.53858 5.59028 5.65439 5.74884 5.80958 5.90362 5.93664 5.95821 5.99865 6.02107 6.06494 6.16173 6.20753 6.27608 6.37103 6.55622 6.65909 6.79810 6.85871 7.12853 7.52900 7.76823 8.14147 8.47120 8.75957 8.77518 9.40553 10.88687 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.004437 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.416014 B = 6308.373913 C = 7884.401694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.626 5.626 5 C 0.045 3.955 6 C -0.079 4.079 7 C -0.144 4.144 8 C 0.586 3.414 9 O -0.560 6.560 10 N -0.632 5.632 11 C 0.104 3.896 12 C 0.034 3.966 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.106 3.894 22 C -0.089 4.089 23 C -0.131 4.131 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.346 0.654 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -15.348 -3.611 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.071 4.071 4 N -0.254 5.254 5 C -0.048 4.048 6 C -0.118 4.118 7 C -0.148 4.148 8 C 0.374 3.626 9 O -0.440 6.440 10 N -0.364 5.364 11 C -0.018 4.018 12 C 0.014 3.986 13 C -0.557 4.557 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.017 4.017 22 C -0.127 4.127 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.946 -15.570 -2.815 15.851 hybrid contribution -0.947 0.920 -1.323 1.869 sum 0.000 -14.650 -4.138 15.223 Atomic orbital electron populations 1.21728 0.95318 1.01758 1.02175 1.21506 0.95855 0.96140 1.02509 1.22027 0.86496 0.97115 1.01486 1.59937 1.07882 1.08880 1.48699 1.24325 0.96682 0.87158 0.96636 1.23774 0.94205 0.91418 1.02363 1.23361 0.98584 0.92599 1.00230 1.18152 0.85168 0.82977 0.76333 1.90637 1.14860 1.85921 1.52605 1.50335 1.09847 1.06252 1.69991 1.23535 1.00712 0.76996 1.00548 1.20519 0.89139 0.91914 0.96984 1.21015 0.98610 1.14948 1.21141 0.91810 1.25017 0.98017 0.96016 0.94456 1.69958 1.17866 1.37878 1.26605 0.86500 0.80355 0.81942 0.79028 1.19564 1.20927 1.20840 1.23725 0.77532 0.99982 1.00410 1.24544 0.99313 0.92516 0.96369 1.24655 0.99208 0.96034 0.97275 0.92378 0.92706 0.92539 0.92210 0.91052 0.90428 0.94682 0.83436 0.90793 0.90133 0.90721 0.91924 0.91645 0.92696 0.91892 0.90833 0.90215 0.90054 0.90233 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.15 0.37 -0.76 16 2 C -0.12 -0.98 6.19 -26.73 -0.17 -1.14 16 3 C 0.06 0.56 5.69 -3.82 -0.02 0.54 16 4 N -0.63 -6.65 6.86 -116.36 -0.80 -7.45 16 5 C 0.04 0.56 3.89 -146.94 -0.57 -0.01 16 6 C -0.08 -1.10 7.78 -26.71 -0.21 -1.30 16 7 C -0.14 -2.34 3.11 -172.27 -0.54 -2.88 16 8 C 0.59 11.94 8.17 -10.99 -0.09 11.85 16 9 O -0.56 -13.02 17.82 5.56 0.10 -12.92 16 10 N -0.63 -13.04 3.61 -178.41 -0.64 -13.68 16 11 C 0.10 2.17 8.39 -2.97 -0.02 2.14 16 12 C 0.03 0.78 3.62 -90.83 -0.33 0.45 16 13 C -0.52 -13.08 8.77 -34.44 -0.30 -13.38 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.78 13.27 55.43 0.74 -23.04 16 17 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.11 2.21 8.17 -2.96 -0.02 2.19 16 22 C -0.09 -1.30 7.95 -24.71 -0.20 -1.49 16 23 C -0.13 -1.81 7.84 -25.99 -0.20 -2.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.35 3.11 8.82 -39.29 -0.35 2.76 16 32 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 34 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.66 8.13 -51.93 -0.42 1.24 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.06 1.30 7.63 -51.93 -0.40 0.91 16 39 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 40 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.08 1.21 7.45 -51.93 -0.39 0.83 16 42 H 0.08 1.12 7.97 -51.92 -0.41 0.71 16 43 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -28.30 356.47 -10.03 -38.33 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.38 Total: 2.69 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.40 Total: -4.14 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.71 Total: -44.17 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.10 Total: -12.92 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.30 -10.03 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278193089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.827 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds