Wall clock time and date at job start Tue Mar 31 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 N 1.46897 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.46907 * 110.99968 * 179.97438 * 4 3 2 6 6 C 1.54412 * 129.01236 * 180.02562 * 5 4 3 7 7 C 1.54419 * 78.89086 * 180.64564 * 6 5 4 8 8 C 1.50703 * 129.01419 * 180.64405 * 7 6 5 9 9 O 1.21281 * 119.99538 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.47584 * 134.49063 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11565 * 204.63541 * 11 10 8 13 13 C 1.50699 * 113.73968 * 222.04272 * 12 11 10 14 14 H 1.07998 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99969 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99800 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47420 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46971 * 120.00705 * 17 15 13 20 20 H 1.48498 * 109.47283 * 240.00450 * 17 15 13 21 21 C 1.47577 * 134.49641 * 359.97438 * 10 8 7 22 22 C 1.54891 * 84.49409 * 43.15382 * 7 6 5 23 23 C 1.54885 * 84.49103 * 318.13307 * 7 6 5 24 24 H 1.09004 * 109.47284 * 300.00219 * 1 2 3 25 25 H 1.09002 * 109.47258 * 60.00316 * 1 2 3 26 26 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47412 * 240.00258 * 2 1 3 28 28 H 1.09002 * 109.47765 * 119.99834 * 2 1 3 29 29 H 1.08997 * 109.47495 * 60.00048 * 3 2 1 30 30 H 1.09002 * 109.46809 * 299.99959 * 3 2 1 31 31 H 1.00905 * 111.00263 * 56.04491 * 4 3 2 32 32 H 1.08992 * 114.93459 * 68.16028 * 6 5 4 33 33 H 1.08998 * 114.98218 * 293.12567 * 6 5 4 34 34 H 1.09001 * 113.76908 * 90.33461 * 11 10 8 35 35 H 1.08997 * 113.76763 * 318.93723 * 11 10 8 36 36 H 1.08997 * 113.73914 * 90.73986 * 12 11 10 37 37 H 0.97000 * 119.99858 * 179.97438 * 16 15 13 38 38 H 1.08995 * 113.76947 * 41.05826 * 21 10 8 39 39 H 1.09001 * 113.87193 * 269.67722 * 21 10 8 40 40 H 1.09001 * 114.98080 * 69.39259 * 22 7 6 41 41 H 1.09003 * 114.97457 * 204.56822 * 22 7 6 42 42 H 1.09008 * 114.97367 * 155.43371 * 23 7 6 43 43 H 1.08998 * 114.98354 * 290.60293 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0354 2.8140 -0.0013 6 6 5.5038 3.2915 -0.0025 7 6 4.7523 4.6404 0.0150 8 6 5.3135 6.0391 0.0142 9 8 6.5140 6.2107 -0.0015 10 7 4.4813 7.0990 0.0319 11 6 4.6706 8.5626 0.0364 12 6 3.2824 8.6350 0.6978 13 6 2.4099 9.7388 0.1577 14 1 2.7803 10.3872 -0.6224 15 6 1.1383 9.9200 0.6590 16 7 0.6870 9.1300 1.6086 17 14 0.0565 11.2877 -0.0109 18 1 0.7925 12.0290 -1.0664 19 1 -1.1803 10.7026 -0.5883 20 1 -0.3029 12.2183 1.0890 21 6 3.0148 7.2624 0.0536 22 6 3.8467 3.9521 1.0662 23 6 3.8173 3.9627 -1.0172 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.8702 0.9165 -0.7822 32 1 6.0537 3.0838 -0.9204 33 1 6.0623 3.0650 0.9056 34 1 4.7063 9.0041 -0.9596 35 1 5.4826 8.8986 0.6813 36 1 3.3134 8.6107 1.7870 37 1 -0.2074 9.2578 1.9615 38 1 2.5042 6.5598 0.7122 39 1 2.5629 7.3223 -0.9365 40 1 4.3226 3.7579 2.0274 41 1 2.8408 4.3641 1.1475 42 1 2.8095 4.3754 -1.0658 43 1 4.2658 3.7785 -1.9934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278193089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:53 Heat of formation + Delta-G solvation = 66.909145 kcal Electronic energy + Delta-G solvation = -21732.045654 eV Core-core repulsion = 18587.735894 eV Total energy + Delta-G solvation = -3144.309760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.08692 -40.63799 -38.52946 -36.90125 -34.64133 -32.84498 -31.07657 -27.72076 -27.03534 -26.85257 -26.72757 -26.30079 -24.62014 -22.17104 -21.78725 -19.95262 -19.22811 -18.69915 -17.90193 -17.23556 -16.76452 -16.57386 -16.16948 -15.78065 -15.50491 -15.17247 -15.02808 -14.88588 -14.17256 -14.11850 -13.77007 -13.35991 -13.34943 -13.16032 -12.83069 -12.78548 -12.57819 -12.56383 -12.25917 -12.24268 -12.21058 -11.81787 -11.64816 -11.47376 -11.35879 -11.26981 -11.13012 -10.75887 -10.54988 -9.60444 -9.53355 -8.17395 -6.28626 1.40788 1.45182 1.49158 1.59301 1.86014 2.45193 2.70817 3.10398 3.13531 3.23409 3.27731 3.43169 3.51027 3.68646 4.08040 4.19461 4.26885 4.39830 4.43254 4.48660 4.52116 4.55233 4.60591 4.64373 4.66573 4.77068 4.77932 4.82550 4.83472 4.89610 4.92746 4.98682 5.02385 5.11030 5.20791 5.31910 5.43849 5.58300 5.80374 5.93802 6.21021 6.35424 6.79249 6.81347 7.11100 7.41644 8.92610 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.004437 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.416014 B = 6308.373913 C = 7884.401694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.057 3.943 4 N -0.623 5.623 5 C 0.076 3.924 6 C -0.073 4.073 7 C -0.174 4.174 8 C 0.581 3.419 9 O -0.593 6.593 10 N -0.633 5.633 11 C 0.108 3.892 12 C 0.024 3.976 13 C -0.530 4.530 14 H 0.066 0.934 15 C 0.023 3.977 16 N -0.917 5.917 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.123 3.877 22 C -0.092 4.092 23 C -0.122 4.122 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.361 0.639 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -16.668 -4.859 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.071 4.071 4 N -0.252 5.252 5 C -0.017 4.017 6 C -0.112 4.112 7 C -0.178 4.178 8 C 0.372 3.628 9 O -0.476 6.476 10 N -0.365 5.365 11 C -0.014 4.014 12 C 0.005 3.995 13 C -0.568 4.568 14 H 0.084 0.916 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.209 1.209 21 C 0.001 3.999 22 C -0.130 4.130 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.182 0.818 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.385 -16.905 -4.075 17.394 hybrid contribution -0.733 1.338 -0.894 1.768 sum -0.348 -15.568 -4.969 16.345 Atomic orbital electron populations 1.21732 0.94963 1.02415 1.01879 1.21457 0.96081 0.94760 1.03047 1.22060 0.85835 0.98381 1.00851 1.59943 1.08467 1.07313 1.49515 1.23976 0.95571 0.87592 0.94609 1.23776 0.94911 0.89466 1.03022 1.23352 1.00702 0.91143 1.02627 1.18775 0.84710 0.84261 0.75095 1.90606 1.16224 1.86678 1.54057 1.50327 1.09698 1.06361 1.70121 1.23454 0.99390 0.77699 1.00875 1.20416 0.90648 0.92996 0.95481 1.21294 0.99018 1.15408 1.21116 0.91602 1.25725 0.99255 0.98043 0.94684 1.70058 1.18286 1.39428 1.27791 0.85524 0.78644 0.79237 0.78366 1.18888 1.20543 1.20941 1.23456 0.77769 0.98415 1.00249 1.24571 0.98423 0.93422 0.96615 1.24645 0.98293 0.95814 0.97548 0.92991 0.92722 0.91426 0.90930 0.91211 0.91760 0.94675 0.81804 0.89603 0.90105 0.89591 0.91777 0.94539 0.92633 0.91993 0.90307 0.90276 0.90792 0.90624 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.58 6.19 30.59 0.19 -1.39 16 3 C 0.06 1.01 5.69 86.31 0.49 1.50 16 4 N -0.62 -11.66 6.86 -522.04 -3.58 -15.24 16 5 C 0.08 1.75 3.89 -6.41 -0.02 1.73 16 6 C -0.07 -1.91 7.78 30.61 0.24 -1.67 16 7 C -0.17 -5.56 3.11 -63.68 -0.20 -5.76 16 8 C 0.58 23.74 8.17 87.66 0.72 24.46 16 9 O -0.59 -27.74 17.82 -3.03 -0.05 -27.79 16 10 N -0.63 -26.26 3.61 -836.76 -3.02 -29.28 16 11 C 0.11 4.53 8.39 86.48 0.73 5.26 16 12 C 0.02 1.13 3.62 -10.87 -0.04 1.09 16 13 C -0.53 -26.75 8.77 25.60 0.22 -26.53 16 14 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 15 C 0.02 1.19 5.46 84.66 0.46 1.65 16 16 N -0.92 -49.64 13.27 21.45 0.28 -49.35 16 17 Si 0.96 40.46 29.54 68.60 2.03 42.48 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.12 5.19 8.17 86.49 0.71 5.90 16 22 C -0.09 -2.61 7.95 31.90 0.25 -2.36 16 23 C -0.12 -3.16 7.84 31.07 0.24 -2.92 16 24 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.36 5.29 8.82 -89.69 -0.79 4.50 16 32 H 0.09 2.03 7.94 -2.39 -0.02 2.02 16 33 H 0.08 2.10 7.91 -2.39 -0.02 2.08 16 34 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 37 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.06 2.60 7.63 -2.39 -0.02 2.58 16 39 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 40 H 0.08 2.23 7.91 -2.39 -0.02 2.21 16 41 H 0.07 2.20 7.45 -2.39 -0.02 2.18 16 42 H 0.08 2.02 7.97 -2.38 -0.02 2.00 16 43 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 Total: -1.00 -59.80 356.47 0.55 -59.25 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.19 Total: 20.24 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.70 Total: -0.30 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -6.31 Total: -93.88 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -59.80 0.55 -59.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278193089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.158 kcal (2) G-P(sol) polarization free energy of solvation -59.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds