Wall clock time and date at job start Tue Mar 31 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99848 * 2 1 4 4 C 1.32993 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.47102 * 120.00006 * 5.62977 * 4 2 1 6 6 O 1.21618 * 119.99938 * 354.69758 * 5 4 2 7 7 N 1.34773 * 120.00161 * 174.69466 * 5 4 2 8 8 C 1.46501 * 119.99856 * 180.02562 * 7 5 4 9 9 C 1.53930 * 112.66012 * 59.29757 * 8 7 5 10 10 C 1.54223 * 106.50592 * 121.44829 * 9 8 7 11 11 C 1.54758 * 104.26986 * 24.96876 * 10 9 8 12 12 C 1.54770 * 103.21719 * 322.12184 * 11 10 9 13 13 H 1.09004 * 111.87027 * 275.07710 * 12 11 10 14 14 N 1.46976 * 108.68821 * 150.20311 * 12 11 10 15 15 C 1.36936 * 125.58406 * 65.84972 * 14 12 11 16 16 H 1.08000 * 119.99456 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00582 * 180.02562 * 15 14 12 18 18 N 1.31614 * 119.99713 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47208 * 90.00049 * 19 17 15 21 21 H 1.48502 * 109.46849 * 209.99899 * 19 17 15 22 22 H 1.48506 * 109.47145 * 329.99989 * 19 17 15 23 23 C 1.47375 * 108.84102 * 245.87629 * 14 12 11 24 24 C 1.54866 * 104.82133 * 24.68579 * 23 14 12 25 25 H 1.09001 * 109.46944 * 238.11698 * 1 2 3 26 26 H 1.09002 * 109.46987 * 358.11205 * 1 2 3 27 27 H 1.08990 * 109.47041 * 118.10879 * 1 2 3 28 28 H 1.09001 * 109.47321 * 269.99786 * 3 2 1 29 29 H 1.08998 * 109.47395 * 30.00680 * 3 2 1 30 30 H 1.09008 * 109.46772 * 150.00281 * 3 2 1 31 31 H 1.07998 * 120.00435 * 185.63711 * 4 2 1 32 32 H 0.97003 * 119.99924 * 359.97438 * 7 5 4 33 33 H 1.09006 * 110.13535 * 2.18567 * 9 8 7 34 34 H 1.08996 * 110.07319 * 240.68356 * 9 8 7 35 35 H 1.09006 * 110.49338 * 266.23984 * 10 9 8 36 36 H 1.08999 * 110.49284 * 143.70459 * 10 9 8 37 37 H 1.08998 * 110.66691 * 80.55852 * 11 10 9 38 38 H 1.09001 * 110.66718 * 203.69169 * 11 10 9 39 39 H 0.96994 * 119.99965 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.36252 * 265.85568 * 23 14 12 41 41 H 1.08999 * 110.37051 * 143.52854 * 23 14 12 42 42 H 1.08993 * 110.96977 * 204.80964 * 24 23 14 43 43 H 1.09005 * 110.96160 * 81.04823 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4419 -2.4226 -0.1261 6 8 0.2257 -2.4271 -0.1323 7 7 2.1206 -3.5819 -0.2342 8 6 1.3934 -4.8474 -0.3598 9 6 0.4756 -4.8840 -1.5951 10 6 0.9363 -6.0836 -2.4478 11 6 1.6125 -7.0360 -1.4326 12 6 2.3447 -6.0677 -0.4725 13 1 3.3264 -5.7846 -0.8522 14 7 2.4126 -6.6865 0.8589 15 6 3.1171 -7.8168 1.1773 16 1 3.6864 -8.3303 0.4167 17 6 3.0996 -8.3024 2.4776 18 7 2.4054 -7.6768 3.4044 19 14 4.0612 -9.8438 2.9119 20 1 5.4342 -9.4679 3.3351 21 1 3.3789 -10.5566 4.0218 22 1 4.1351 -10.7323 1.7243 23 6 1.5978 -5.8919 1.7951 24 6 0.5563 -5.1731 0.9023 25 1 -0.3633 -0.5428 0.8726 26 1 -0.3633 1.0271 0.0339 27 1 -0.3633 -0.4841 -0.9064 28 1 2.4422 1.6198 -1.0277 29 1 1.6715 2.0648 0.5139 30 1 3.2130 1.1748 0.5138 31 1 3.2481 -1.1541 0.0914 32 1 3.0906 -3.5782 -0.2297 33 1 0.5767 -3.9604 -2.1651 34 1 -0.5609 -5.0213 -1.2871 35 1 1.6520 -5.7616 -3.2043 36 1 0.0805 -6.5700 -2.9159 37 1 0.8647 -7.6189 -0.8949 38 1 2.3243 -7.6911 -1.9349 39 1 2.3928 -8.0163 4.3129 40 1 2.2197 -5.1628 2.3146 41 1 1.0980 -6.5443 2.5112 42 1 0.1977 -4.2607 1.3786 43 1 -0.2735 -5.8369 0.6595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278431476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:54 Heat of formation + Delta-G solvation = -0.304636 kcal Electronic energy + Delta-G solvation = -22778.686062 eV Core-core repulsion = 19631.461694 eV Total energy + Delta-G solvation = -3147.224368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.12638 -38.33224 -35.35016 -34.17174 -33.31216 -31.41254 -29.86252 -28.03236 -27.67216 -26.68559 -25.67189 -23.80703 -21.73015 -20.06429 -19.90373 -18.81042 -18.18051 -16.98250 -16.56362 -15.69735 -14.96271 -14.72826 -14.30562 -14.11579 -14.05894 -13.61410 -13.42763 -13.15475 -12.78425 -12.45096 -12.35393 -12.10128 -11.78339 -11.72861 -11.60393 -11.48437 -11.11740 -10.95323 -10.81648 -10.61734 -10.48961 -10.11468 -9.99567 -9.90133 -9.66337 -9.57681 -9.14277 -9.06168 -8.63661 -8.36695 -6.83161 -5.62687 -3.05875 1.49240 3.39980 3.45065 3.47252 3.59786 3.61576 4.48892 4.75940 4.81909 4.97279 5.21146 5.24886 5.34768 5.36853 5.46998 5.54219 5.65642 5.69453 5.70404 5.87933 5.91817 5.92230 6.04705 6.12498 6.14879 6.19158 6.34143 6.41684 6.46474 6.52004 6.56483 6.59672 6.65225 6.83779 6.84769 7.04859 7.21992 7.58323 7.66949 7.89369 7.99951 8.39063 8.66879 9.23505 9.84574 10.49165 11.39798 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.004847 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.067769 B = 5775.800176 C = 6419.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.124 4.124 4 C -0.229 4.229 5 C 0.543 3.457 6 O -0.541 6.541 7 N -0.702 5.702 8 C 0.162 3.838 9 C -0.108 4.108 10 C -0.125 4.125 11 C -0.129 4.129 12 C 0.161 3.839 13 H 0.045 0.955 14 N -0.595 5.595 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.153 3.847 24 C -0.141 4.141 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.398 0.602 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.251 0.749 40 H 0.008 0.992 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 13.328 -8.971 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.181 4.181 4 C -0.250 4.250 5 C 0.332 3.668 6 O -0.421 6.421 7 N -0.351 5.351 8 C 0.075 3.925 9 C -0.147 4.147 10 C -0.164 4.164 11 C -0.169 4.169 12 C 0.053 3.947 13 H 0.062 0.938 14 N -0.319 5.319 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.028 3.972 24 C -0.180 4.180 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.232 0.768 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.988 13.156 -8.752 15.926 hybrid contribution 1.246 -0.777 0.306 1.500 sum -0.742 12.379 -8.447 15.004 Atomic orbital electron populations 1.21005 0.90816 1.00589 1.04499 1.22502 0.96901 0.94306 0.90923 1.20994 1.00039 0.94468 1.02595 1.22470 1.00104 0.92402 1.10008 1.18450 0.87506 0.84057 0.76754 1.90745 1.13503 1.87354 1.50515 1.45799 1.09864 1.05665 1.73821 1.21663 0.92685 0.82308 0.95829 1.22289 0.99194 0.97789 0.95390 1.22372 0.99701 0.96518 0.97760 1.22942 0.99725 0.97700 0.96560 1.21777 0.94693 0.89965 0.88271 0.93752 1.44518 1.56315 1.27895 1.03195 1.19042 1.21839 0.99909 0.94055 0.90542 1.24776 1.00599 0.99341 0.95856 1.69807 1.44685 1.40482 1.01911 0.86104 0.79211 0.82566 0.77795 1.21739 1.21713 1.20713 1.21968 0.90180 0.93085 0.91957 1.23309 0.98472 1.00087 0.96143 0.89921 0.93417 0.89984 0.90555 0.91247 0.91286 0.86005 0.76776 0.92370 0.91272 0.92459 0.92335 0.90751 0.92441 0.93783 0.97367 0.87514 0.91623 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.34 36.01 0.30 -1.06 16 2 C -0.04 -0.51 6.11 -101.16 -0.62 -1.12 16 3 C -0.12 -0.99 9.99 36.01 0.36 -0.63 16 4 C -0.23 -2.93 9.63 -37.81 -0.36 -3.29 16 5 C 0.54 8.75 6.90 -12.67 -0.09 8.67 16 6 O -0.54 -9.88 10.98 5.26 0.06 -9.82 16 7 N -0.70 -11.55 5.25 -46.35 -0.24 -11.80 16 8 C 0.16 2.98 0.75 -129.19 -0.10 2.88 16 9 C -0.11 -1.80 5.25 -25.61 -0.13 -1.94 16 10 C -0.13 -1.93 6.83 -25.17 -0.17 -2.10 16 11 C -0.13 -2.38 6.21 -24.87 -0.15 -2.54 16 12 C 0.16 3.27 3.65 -65.61 -0.24 3.03 16 13 H 0.04 0.89 7.99 -51.93 -0.42 0.47 16 14 N -0.60 -14.81 3.03 -161.13 -0.49 -15.29 16 15 C -0.22 -5.98 10.01 -15.06 -0.15 -6.13 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.80 10.07 55.49 0.56 -26.25 16 19 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.15 3.79 5.91 -2.58 -0.02 3.77 16 24 C -0.14 -2.95 5.75 -24.74 -0.14 -3.09 16 25 H 0.08 1.15 7.31 -51.93 -0.38 0.77 16 26 H 0.05 0.45 7.93 -51.93 -0.41 0.04 16 27 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.48 8.03 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.06 -51.92 -0.42 0.09 16 31 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 32 H 0.40 5.91 8.49 -40.82 -0.35 5.56 16 33 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 34 H 0.07 1.20 7.38 -51.93 -0.38 0.81 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.11 3.00 5.82 -51.93 -0.30 2.69 16 42 H 0.07 1.40 6.82 -51.93 -0.35 1.04 16 43 H 0.07 1.39 7.62 -51.93 -0.40 0.99 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -30.28 334.04 -8.80 -39.08 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.08 Total: 6.07 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.61 Total: -3.94 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.17 Total: -53.34 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.28 -8.80 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.776 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds