Wall clock time and date at job start Tue Mar 31 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99848 * 2 1 4 4 C 1.32993 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.47102 * 120.00006 * 5.62977 * 4 2 1 6 6 O 1.21618 * 119.99938 * 354.69758 * 5 4 2 7 7 N 1.34773 * 120.00161 * 174.69466 * 5 4 2 8 8 C 1.46501 * 119.99856 * 180.02562 * 7 5 4 9 9 C 1.53930 * 112.66012 * 59.29757 * 8 7 5 10 10 C 1.54223 * 106.50592 * 121.44829 * 9 8 7 11 11 C 1.54758 * 104.26986 * 24.96876 * 10 9 8 12 12 C 1.54770 * 103.21719 * 322.12184 * 11 10 9 13 13 H 1.09004 * 111.87027 * 275.07710 * 12 11 10 14 14 N 1.46976 * 108.68821 * 150.20311 * 12 11 10 15 15 C 1.36936 * 125.58406 * 65.84972 * 14 12 11 16 16 H 1.08000 * 119.99456 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00582 * 180.02562 * 15 14 12 18 18 N 1.31614 * 119.99713 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47208 * 90.00049 * 19 17 15 21 21 H 1.48502 * 109.46849 * 209.99899 * 19 17 15 22 22 H 1.48506 * 109.47145 * 329.99989 * 19 17 15 23 23 C 1.47375 * 108.84102 * 245.87629 * 14 12 11 24 24 C 1.54866 * 104.82133 * 24.68579 * 23 14 12 25 25 H 1.09001 * 109.46944 * 238.11698 * 1 2 3 26 26 H 1.09002 * 109.46987 * 358.11205 * 1 2 3 27 27 H 1.08990 * 109.47041 * 118.10879 * 1 2 3 28 28 H 1.09001 * 109.47321 * 269.99786 * 3 2 1 29 29 H 1.08998 * 109.47395 * 30.00680 * 3 2 1 30 30 H 1.09008 * 109.46772 * 150.00281 * 3 2 1 31 31 H 1.07998 * 120.00435 * 185.63711 * 4 2 1 32 32 H 0.97003 * 119.99924 * 359.97438 * 7 5 4 33 33 H 1.09006 * 110.13535 * 2.18567 * 9 8 7 34 34 H 1.08996 * 110.07319 * 240.68356 * 9 8 7 35 35 H 1.09006 * 110.49338 * 266.23984 * 10 9 8 36 36 H 1.08999 * 110.49284 * 143.70459 * 10 9 8 37 37 H 1.08998 * 110.66691 * 80.55852 * 11 10 9 38 38 H 1.09001 * 110.66718 * 203.69169 * 11 10 9 39 39 H 0.96994 * 119.99965 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.36252 * 265.85568 * 23 14 12 41 41 H 1.08999 * 110.37051 * 143.52854 * 23 14 12 42 42 H 1.08993 * 110.96977 * 204.80964 * 24 23 14 43 43 H 1.09005 * 110.96160 * 81.04823 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4419 -2.4226 -0.1261 6 8 0.2257 -2.4271 -0.1323 7 7 2.1206 -3.5819 -0.2342 8 6 1.3934 -4.8474 -0.3598 9 6 0.4756 -4.8840 -1.5951 10 6 0.9363 -6.0836 -2.4478 11 6 1.6125 -7.0360 -1.4326 12 6 2.3447 -6.0677 -0.4725 13 1 3.3264 -5.7846 -0.8522 14 7 2.4126 -6.6865 0.8589 15 6 3.1171 -7.8168 1.1773 16 1 3.6864 -8.3303 0.4167 17 6 3.0996 -8.3024 2.4776 18 7 2.4054 -7.6768 3.4044 19 14 4.0612 -9.8438 2.9119 20 1 5.4342 -9.4679 3.3351 21 1 3.3789 -10.5566 4.0218 22 1 4.1351 -10.7323 1.7243 23 6 1.5978 -5.8919 1.7951 24 6 0.5563 -5.1731 0.9023 25 1 -0.3633 -0.5428 0.8726 26 1 -0.3633 1.0271 0.0339 27 1 -0.3633 -0.4841 -0.9064 28 1 2.4422 1.6198 -1.0277 29 1 1.6715 2.0648 0.5139 30 1 3.2130 1.1748 0.5138 31 1 3.2481 -1.1541 0.0914 32 1 3.0906 -3.5782 -0.2297 33 1 0.5767 -3.9604 -2.1651 34 1 -0.5609 -5.0213 -1.2871 35 1 1.6520 -5.7616 -3.2043 36 1 0.0805 -6.5700 -2.9159 37 1 0.8647 -7.6189 -0.8949 38 1 2.3243 -7.6911 -1.9349 39 1 2.3928 -8.0163 4.3129 40 1 2.2197 -5.1628 2.3146 41 1 1.0980 -6.5443 2.5112 42 1 0.1977 -4.2607 1.3786 43 1 -0.2735 -5.8369 0.6595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278431476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:52 Heat of formation + Delta-G solvation = -18.353760 kcal Electronic energy + Delta-G solvation = -22779.468730 eV Core-core repulsion = 19631.461694 eV Total energy + Delta-G solvation = -3148.007037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.56385 -39.73530 -36.43262 -35.89019 -34.67209 -33.32287 -31.58147 -29.06350 -28.58455 -28.41605 -27.12447 -25.73037 -23.08914 -21.78347 -21.35484 -20.20885 -19.41579 -18.90049 -17.72758 -17.19925 -16.85246 -16.13116 -15.70690 -15.47624 -15.13478 -15.10029 -14.66670 -14.55746 -14.34767 -13.91161 -13.49105 -13.29031 -13.22932 -13.08271 -12.90668 -12.81748 -12.65098 -12.60328 -12.39441 -12.22632 -12.02156 -11.90218 -11.68752 -11.53505 -11.45938 -11.25048 -10.72534 -10.41720 -10.14196 -9.70560 -8.86686 -7.73611 -5.18783 0.48995 1.47862 1.49297 1.58035 2.33726 2.40248 2.52096 3.35371 3.39546 3.65883 3.87913 3.96166 3.97803 3.98078 4.32811 4.36929 4.43984 4.47854 4.59060 4.61331 4.67821 4.74171 4.80189 4.84467 4.91846 4.96108 4.97179 5.07468 5.09593 5.18270 5.22248 5.24102 5.32022 5.47808 5.51541 5.58662 5.64602 5.67082 5.76418 5.86477 6.30775 6.73646 7.11942 7.41188 7.80393 8.44919 9.27888 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.004847 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.067769 B = 5775.800176 C = 6419.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.250 4.250 5 C 0.537 3.463 6 O -0.569 6.569 7 N -0.703 5.703 8 C 0.171 3.829 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.125 4.125 12 C 0.153 3.847 13 H 0.056 0.944 14 N -0.611 5.611 15 C -0.226 4.226 16 H 0.085 0.915 17 C -0.069 4.069 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.164 3.836 24 C -0.128 4.128 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.244 0.756 40 H -0.019 1.019 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 14.593 -11.129 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.271 4.271 5 C 0.328 3.672 6 O -0.451 6.451 7 N -0.353 5.353 8 C 0.084 3.916 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.165 4.165 12 C 0.046 3.954 13 H 0.073 0.927 14 N -0.335 5.335 15 C -0.355 4.355 16 H 0.103 0.897 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.807 3.193 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.192 1.192 23 C 0.038 3.962 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.054 0.946 40 H -0.002 1.002 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.002 14.437 -10.957 18.152 hybrid contribution 0.903 -1.088 0.983 1.723 sum -0.098 13.349 -9.974 16.663 Atomic orbital electron populations 1.20965 0.91646 1.01740 1.02612 1.22876 0.96621 0.95567 0.88062 1.21072 1.00169 0.92534 1.04030 1.22484 1.01096 0.91029 1.12492 1.19049 0.87417 0.84870 0.75836 1.90733 1.14762 1.87802 1.51771 1.45776 1.10251 1.05144 1.74156 1.21482 0.92157 0.82829 0.95131 1.22211 0.98215 0.98881 0.94649 1.22310 1.00667 0.94806 0.97048 1.22801 0.99233 0.97731 0.96692 1.22033 0.95809 0.91018 0.86530 0.92658 1.44705 1.56095 1.27680 1.05007 1.19430 1.21342 1.00434 0.94267 0.89679 1.25600 1.02073 1.02431 0.96005 1.70069 1.46385 1.41999 1.01820 0.85078 0.77549 0.79222 0.77493 1.21532 1.22483 1.19194 1.21611 0.90404 0.92001 0.92143 1.23107 0.97619 0.99104 0.96934 0.92308 0.90643 0.91502 0.88756 0.89845 0.90265 0.83808 0.75854 0.91668 0.92090 0.90103 0.90365 0.93275 0.91555 0.94603 1.00155 0.91117 0.92295 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 8.34 71.24 0.59 -2.00 16 2 C -0.03 -0.61 6.11 -17.61 -0.11 -0.71 16 3 C -0.12 -1.51 9.99 71.24 0.71 -0.80 16 4 C -0.25 -6.02 9.63 23.43 0.23 -5.80 16 5 C 0.54 17.05 6.90 86.57 0.60 17.65 16 6 O -0.57 -20.85 10.98 -4.09 -0.04 -20.90 16 7 N -0.70 -22.73 5.25 -418.81 -2.20 -24.93 16 8 C 0.17 6.25 0.75 5.30 0.00 6.25 16 9 C -0.10 -3.21 5.25 31.32 0.16 -3.05 16 10 C -0.11 -3.08 6.83 31.61 0.22 -2.86 16 11 C -0.12 -4.42 6.21 31.80 0.20 -4.22 16 12 C 0.15 6.10 3.65 46.24 0.17 6.27 16 13 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 14 N -0.61 -30.94 3.03 -663.69 -2.01 -32.95 16 15 C -0.23 -12.38 10.01 84.03 0.84 -11.54 16 16 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 18 N -0.95 -57.67 10.07 21.65 0.22 -57.45 16 19 Si 0.98 45.67 29.55 68.60 2.03 47.69 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.16 8.51 5.91 86.85 0.51 9.02 16 24 C -0.13 -5.55 5.75 31.88 0.18 -5.36 16 25 H 0.06 1.65 7.31 -2.39 -0.02 1.63 16 26 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 27 H 0.07 1.75 7.15 -2.39 -0.02 1.74 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 30 H 0.08 0.87 8.06 -2.38 -0.02 0.86 16 31 H 0.14 2.75 8.04 -2.91 -0.02 2.73 16 32 H 0.41 11.69 8.49 -92.71 -0.79 10.90 16 33 H 0.06 2.01 7.45 -2.38 -0.02 2.00 16 34 H 0.06 2.05 7.38 -2.39 -0.02 2.03 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 40 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.07 4.21 5.82 -2.39 -0.01 4.20 16 42 H 0.06 2.61 6.82 -2.39 -0.02 2.59 16 43 H 0.06 2.75 7.62 -2.38 -0.02 2.73 16 Total: -1.00 -67.70 334.04 2.97 -64.72 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.21 Total: 24.41 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.77 Total: -0.60 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.99 Total: -115.34 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.04 Total: -20.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.70 2.97 -64.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.371 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds