Wall clock time and date at job start Tue Mar 31 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50702 * 119.99831 * 2 1 4 4 C 1.32988 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00267 * 5.62775 * 4 2 1 6 6 O 1.21617 * 119.99453 * 354.69937 * 5 4 2 7 7 N 1.34773 * 120.00032 * 174.69272 * 5 4 2 8 8 C 1.46504 * 119.99586 * 180.02562 * 7 5 4 9 9 C 1.51222 * 111.06499 * 281.61554 * 8 7 5 10 10 C 1.55688 * 104.60838 * 275.46275 * 9 8 7 11 11 C 1.56280 * 105.93504 * 352.75486 * 10 9 8 12 12 C 1.50511 * 101.76020 * 335.73723 * 11 10 9 13 13 H 1.09000 * 108.14963 * 293.07747 * 12 11 10 14 14 N 1.42707 * 128.14745 * 161.30218 * 12 11 10 15 15 C 1.36932 * 127.10578 * 28.29762 * 14 12 11 16 16 H 1.08007 * 119.99937 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00670 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99466 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00534 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47080 * 89.99673 * 19 17 15 21 21 H 1.48497 * 109.47288 * 209.99819 * 19 17 15 22 22 H 1.48505 * 109.46905 * 330.00038 * 19 17 15 23 23 C 1.49414 * 105.80825 * 208.29840 * 14 12 11 24 24 C 1.52136 * 111.08396 * 61.01555 * 8 7 5 25 25 H 1.09005 * 109.46914 * 238.11568 * 1 2 3 26 26 H 1.09007 * 109.47142 * 358.10714 * 1 2 3 27 27 H 1.08993 * 109.47608 * 118.11269 * 1 2 3 28 28 H 1.09003 * 109.47584 * 270.00084 * 3 2 1 29 29 H 1.08998 * 109.47517 * 30.00309 * 3 2 1 30 30 H 1.09007 * 109.47210 * 150.00634 * 3 2 1 31 31 H 1.08010 * 120.00011 * 185.63437 * 4 2 1 32 32 H 0.96993 * 120.00105 * 0.02562 * 7 5 4 33 33 H 1.09003 * 110.40659 * 34.25178 * 9 8 7 34 34 H 1.09001 * 110.40589 * 156.56477 * 9 8 7 35 35 H 1.09004 * 110.15441 * 111.86671 * 10 9 8 36 36 H 1.08995 * 110.16356 * 233.63349 * 10 9 8 37 37 H 1.09000 * 110.97224 * 93.85754 * 11 10 9 38 38 H 1.09005 * 110.96845 * 217.58317 * 11 10 9 39 39 H 0.97000 * 119.99796 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.08833 * 249.40787 * 23 14 12 41 41 H 1.09003 * 110.06997 * 127.89572 * 23 14 12 42 42 H 1.09001 * 111.14915 * 192.49172 * 24 8 7 43 43 H 1.08991 * 111.14915 * 316.67500 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4418 -2.4226 -0.1260 6 8 0.2256 -2.4270 -0.1322 7 7 2.1205 -3.5819 -0.2342 8 6 1.3933 -4.8474 -0.3598 9 6 0.8699 -5.3089 0.9818 10 6 2.0648 -6.0683 1.6294 11 6 3.1657 -6.1585 0.5238 12 6 2.3473 -6.0433 -0.7341 13 1 1.7250 -6.9344 -0.8170 14 7 2.7909 -5.6978 -2.0457 15 6 4.0341 -5.9084 -2.5796 16 1 4.8024 -6.3839 -1.9879 17 6 4.3074 -5.5099 -3.8808 18 7 3.3713 -4.9299 -4.6018 19 14 6.0037 -5.7965 -4.6088 20 1 6.0397 -7.1248 -5.2720 21 1 6.2998 -4.7370 -5.6063 22 1 7.0200 -5.7558 -3.5268 23 6 1.6187 -5.0586 -2.7165 24 6 0.5308 -4.8610 -1.6129 25 1 -0.3633 -0.5428 0.8727 26 1 -0.3634 1.0272 0.0339 27 1 -0.3634 -0.4842 -0.9063 28 1 2.4421 1.6199 -1.0277 29 1 1.6714 2.0648 0.5139 30 1 3.2129 1.1748 0.5138 31 1 3.2481 -1.1540 0.0913 32 1 3.0904 -3.5783 -0.2290 33 1 0.5866 -4.4529 1.5942 34 1 0.0196 -5.9778 0.8484 35 1 2.4406 -5.5137 2.4893 36 1 1.7545 -7.0681 1.9330 37 1 3.8711 -5.3317 0.6074 38 1 3.6838 -7.1166 0.5665 39 1 3.5621 -4.6517 -5.5112 40 1 1.2380 -5.7086 -3.5044 41 1 1.9070 -4.0939 -3.1341 42 1 -0.1708 -5.6951 -1.5984 43 1 0.0083 -3.9131 -1.7410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278431477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:59 Heat of formation + Delta-G solvation = 12.563310 kcal Electronic energy + Delta-G solvation = -23146.237557 eV Core-core repulsion = 19999.571185 eV Total energy + Delta-G solvation = -3146.666372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.39308 -38.35656 -35.15645 -34.39125 -32.89444 -31.68201 -29.93047 -27.83575 -27.47525 -26.91784 -25.60437 -24.01026 -21.57513 -20.44967 -19.64177 -18.65654 -18.36141 -16.54979 -16.40972 -15.64286 -14.85152 -14.63316 -14.50447 -14.03317 -13.90302 -13.85151 -13.65257 -13.11771 -12.59407 -12.32031 -12.28236 -12.13912 -11.88482 -11.59745 -11.42382 -11.35257 -11.29189 -10.99107 -10.90100 -10.79019 -10.42419 -10.25351 -9.97093 -9.92038 -9.67056 -9.41468 -8.97830 -8.83091 -8.65076 -8.25193 -6.83988 -5.73255 -3.07645 1.67089 3.37741 3.42864 3.44867 3.72016 3.91170 4.46210 4.67357 4.93420 4.98267 5.24142 5.26358 5.40480 5.48599 5.50276 5.61028 5.64857 5.76289 5.79317 5.84451 5.87854 5.98255 6.02611 6.04709 6.17168 6.27554 6.30808 6.35112 6.39685 6.46328 6.53543 6.66503 6.73038 6.75767 6.89076 6.95501 7.32917 7.55004 7.63498 7.80408 8.21652 8.22877 8.87532 9.14431 9.81219 10.51208 11.38900 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.006580 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.756459 B = 4254.520131 C = 5265.628570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.123 4.123 4 C -0.223 4.223 5 C 0.545 3.455 6 O -0.551 6.551 7 N -0.686 5.686 8 C 0.133 3.867 9 C -0.111 4.111 10 C -0.116 4.116 11 C -0.115 4.115 12 C 0.158 3.842 13 H 0.021 0.979 14 N -0.584 5.584 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.180 3.820 24 C -0.141 4.141 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 6.496 11.420 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.180 4.180 4 C -0.244 4.244 5 C 0.334 3.666 6 O -0.433 6.433 7 N -0.335 5.335 8 C 0.045 3.955 9 C -0.150 4.150 10 C -0.154 4.154 11 C -0.153 4.153 12 C 0.048 3.952 13 H 0.038 0.962 14 N -0.307 5.307 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.056 3.944 24 C -0.180 4.180 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.235 0.765 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.602 6.490 11.166 13.408 hybrid contribution 1.556 -0.227 -0.589 1.679 sum -2.046 6.262 10.577 12.461 Atomic orbital electron populations 1.20972 0.90927 1.00344 1.04407 1.22448 0.96808 0.94279 0.91555 1.20978 0.99840 0.94442 1.02722 1.22480 1.00034 0.92560 1.09370 1.18400 0.87369 0.84074 0.76757 1.90699 1.13606 1.87382 1.51601 1.45551 1.10039 1.05252 1.72697 1.21476 0.95358 0.85299 0.93374 1.21888 0.97417 0.99611 0.96078 1.22813 0.95257 0.99733 0.97645 1.21840 0.97310 1.01512 0.94678 1.20825 0.93535 0.93790 0.87096 0.96171 1.43689 1.09867 1.69507 1.07652 1.19002 0.87149 1.33530 0.96110 0.90391 1.24795 0.97806 1.00804 0.96775 1.69932 1.31691 1.45323 1.09521 0.86174 0.83660 0.77356 0.78865 1.21642 1.21764 1.20732 1.22008 0.83346 0.98111 0.90903 1.22811 0.98021 1.01765 0.95408 0.90251 0.93596 0.89889 0.90489 0.91450 0.91425 0.86177 0.76535 0.91771 0.91277 0.92275 0.92004 0.91715 0.91816 0.93735 0.94880 0.91823 0.92007 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.33 36.00 0.30 -1.18 16 2 C -0.05 -0.64 6.11 -101.17 -0.62 -1.26 16 3 C -0.12 -1.21 9.99 36.01 0.36 -0.85 16 4 C -0.22 -3.33 9.63 -37.81 -0.36 -3.69 16 5 C 0.54 9.71 7.11 -12.67 -0.09 9.62 16 6 O -0.55 -10.76 11.23 5.26 0.06 -10.70 16 7 N -0.69 -12.41 4.52 -47.74 -0.22 -12.63 16 8 C 0.13 2.48 0.42 -130.70 -0.05 2.42 16 9 C -0.11 -1.77 6.16 -26.20 -0.16 -1.93 16 10 C -0.12 -1.65 6.94 -23.54 -0.16 -1.81 16 11 C -0.11 -1.92 6.47 -26.21 -0.17 -2.09 16 12 C 0.16 3.20 2.66 -68.72 -0.18 3.01 16 13 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 14 N -0.58 -14.35 3.18 -162.58 -0.52 -14.87 16 15 C -0.23 -6.15 10.29 -15.06 -0.15 -6.30 16 16 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 17 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 18 N -0.92 -26.69 10.55 55.49 0.59 -26.10 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.18 4.43 5.35 -0.69 0.00 4.43 16 24 C -0.14 -2.91 6.09 -25.44 -0.15 -3.07 16 25 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 26 H 0.05 0.49 7.93 -51.92 -0.41 0.08 16 27 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 30 H 0.07 0.60 8.06 -51.92 -0.42 0.18 16 31 H 0.12 1.58 8.04 -52.48 -0.42 1.16 16 32 H 0.40 7.17 7.59 -40.82 -0.31 6.86 16 33 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.08 7.20 -51.93 -0.37 0.71 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.03 0.89 7.99 -51.93 -0.41 0.47 16 41 H 0.06 1.76 7.05 -51.93 -0.37 1.39 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.66 6.27 -51.93 -0.33 1.33 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -29.98 334.71 -8.73 -38.71 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.11 Total: 6.78 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.55 Total: -2.94 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.15 Total: -53.60 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.06 Total: -10.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.98 -8.73 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.275 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds