Wall clock time and date at job start Tue Mar 31 2020 00:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50702 * 119.99831 * 2 1 4 4 C 1.32988 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00267 * 5.62775 * 4 2 1 6 6 O 1.21617 * 119.99453 * 354.69937 * 5 4 2 7 7 N 1.34773 * 120.00032 * 174.69272 * 5 4 2 8 8 C 1.46504 * 119.99586 * 180.02562 * 7 5 4 9 9 C 1.51222 * 111.06499 * 281.61554 * 8 7 5 10 10 C 1.55688 * 104.60838 * 275.46275 * 9 8 7 11 11 C 1.56280 * 105.93504 * 352.75486 * 10 9 8 12 12 C 1.50511 * 101.76020 * 335.73723 * 11 10 9 13 13 H 1.09000 * 108.14963 * 293.07747 * 12 11 10 14 14 N 1.42707 * 128.14745 * 161.30218 * 12 11 10 15 15 C 1.36932 * 127.10578 * 28.29762 * 14 12 11 16 16 H 1.08007 * 119.99937 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00670 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99466 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00534 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47080 * 89.99673 * 19 17 15 21 21 H 1.48497 * 109.47288 * 209.99819 * 19 17 15 22 22 H 1.48505 * 109.46905 * 330.00038 * 19 17 15 23 23 C 1.49414 * 105.80825 * 208.29840 * 14 12 11 24 24 C 1.52136 * 111.08396 * 61.01555 * 8 7 5 25 25 H 1.09005 * 109.46914 * 238.11568 * 1 2 3 26 26 H 1.09007 * 109.47142 * 358.10714 * 1 2 3 27 27 H 1.08993 * 109.47608 * 118.11269 * 1 2 3 28 28 H 1.09003 * 109.47584 * 270.00084 * 3 2 1 29 29 H 1.08998 * 109.47517 * 30.00309 * 3 2 1 30 30 H 1.09007 * 109.47210 * 150.00634 * 3 2 1 31 31 H 1.08010 * 120.00011 * 185.63437 * 4 2 1 32 32 H 0.96993 * 120.00105 * 0.02562 * 7 5 4 33 33 H 1.09003 * 110.40659 * 34.25178 * 9 8 7 34 34 H 1.09001 * 110.40589 * 156.56477 * 9 8 7 35 35 H 1.09004 * 110.15441 * 111.86671 * 10 9 8 36 36 H 1.08995 * 110.16356 * 233.63349 * 10 9 8 37 37 H 1.09000 * 110.97224 * 93.85754 * 11 10 9 38 38 H 1.09005 * 110.96845 * 217.58317 * 11 10 9 39 39 H 0.97000 * 119.99796 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.08833 * 249.40787 * 23 14 12 41 41 H 1.09003 * 110.06997 * 127.89572 * 23 14 12 42 42 H 1.09001 * 111.14915 * 192.49172 * 24 8 7 43 43 H 1.08991 * 111.14915 * 316.67500 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4418 -2.4226 -0.1260 6 8 0.2256 -2.4270 -0.1322 7 7 2.1205 -3.5819 -0.2342 8 6 1.3933 -4.8474 -0.3598 9 6 0.8699 -5.3089 0.9818 10 6 2.0648 -6.0683 1.6294 11 6 3.1657 -6.1585 0.5238 12 6 2.3473 -6.0433 -0.7341 13 1 1.7250 -6.9344 -0.8170 14 7 2.7909 -5.6978 -2.0457 15 6 4.0341 -5.9084 -2.5796 16 1 4.8024 -6.3839 -1.9879 17 6 4.3074 -5.5099 -3.8808 18 7 3.3713 -4.9299 -4.6018 19 14 6.0037 -5.7965 -4.6088 20 1 6.0397 -7.1248 -5.2720 21 1 6.2998 -4.7370 -5.6063 22 1 7.0200 -5.7558 -3.5268 23 6 1.6187 -5.0586 -2.7165 24 6 0.5308 -4.8610 -1.6129 25 1 -0.3633 -0.5428 0.8727 26 1 -0.3634 1.0272 0.0339 27 1 -0.3634 -0.4842 -0.9063 28 1 2.4421 1.6199 -1.0277 29 1 1.6714 2.0648 0.5139 30 1 3.2129 1.1748 0.5138 31 1 3.2481 -1.1540 0.0913 32 1 3.0904 -3.5783 -0.2290 33 1 0.5866 -4.4529 1.5942 34 1 0.0196 -5.9778 0.8484 35 1 2.4406 -5.5137 2.4893 36 1 1.7545 -7.0681 1.9330 37 1 3.8711 -5.3317 0.6074 38 1 3.6838 -7.1166 0.5665 39 1 3.5621 -4.6517 -5.5112 40 1 1.2380 -5.7086 -3.5044 41 1 1.9070 -4.0939 -3.1341 42 1 -0.1708 -5.6951 -1.5984 43 1 0.0083 -3.9131 -1.7410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278431477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:57 Heat of formation + Delta-G solvation = -5.070222 kcal Electronic energy + Delta-G solvation = -23147.002204 eV Core-core repulsion = 19999.571185 eV Total energy + Delta-G solvation = -3147.431019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.90580 -39.76825 -36.38344 -36.04279 -34.33262 -33.57373 -31.65118 -28.90362 -28.56315 -28.52942 -27.12406 -25.92787 -22.95383 -22.08427 -21.24979 -20.13644 -19.60585 -18.36871 -17.77668 -17.30448 -16.39281 -16.19894 -15.94442 -15.71254 -15.24932 -15.19649 -14.84051 -14.30522 -14.14561 -14.03732 -13.57390 -13.29994 -13.20372 -13.00411 -12.95202 -12.84567 -12.65603 -12.58524 -12.39373 -12.11878 -12.09398 -12.00285 -11.77597 -11.53896 -11.35172 -10.99882 -10.72121 -10.31723 -10.11345 -9.64450 -8.86810 -7.83534 -5.19364 0.52004 1.46751 1.48079 1.56526 2.35662 2.50334 2.57738 3.11263 3.36258 3.74701 3.90348 3.90875 3.98005 4.11782 4.26838 4.35277 4.42386 4.46281 4.58776 4.61768 4.64249 4.72562 4.81370 4.84692 4.95105 4.95793 4.99543 5.04868 5.09686 5.12211 5.22051 5.24783 5.29833 5.49101 5.56265 5.58707 5.60716 5.68043 5.69537 5.89961 6.18245 6.81756 7.04174 7.48023 7.77104 8.50553 9.28487 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.006580 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.756459 B = 4254.520131 C = 5265.628570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.033 4.033 3 C -0.121 4.121 4 C -0.251 4.251 5 C 0.537 3.463 6 O -0.575 6.575 7 N -0.689 5.689 8 C 0.140 3.860 9 C -0.106 4.106 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.145 3.855 13 H 0.014 0.986 14 N -0.597 5.597 15 C -0.231 4.231 16 H 0.089 0.911 17 C -0.065 4.065 18 N -0.953 5.953 19 Si 0.975 3.025 20 H -0.291 1.291 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.193 3.807 24 C -0.130 4.130 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.400 0.600 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.244 0.756 40 H -0.003 1.003 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 7.038 13.835 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.035 4.035 3 C -0.178 4.178 4 C -0.272 4.272 5 C 0.329 3.671 6 O -0.459 6.459 7 N -0.338 5.338 8 C 0.052 3.948 9 C -0.145 4.145 10 C -0.139 4.139 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.032 0.968 14 N -0.320 5.320 15 C -0.359 4.359 16 H 0.107 0.893 17 C -0.258 4.258 18 N -0.602 5.602 19 Si 0.804 3.196 20 H -0.218 1.218 21 H -0.226 1.226 22 H -0.189 1.189 23 C 0.069 3.931 24 C -0.169 4.169 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.154 0.846 32 H 0.235 0.765 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.575 7.018 13.632 15.547 hybrid contribution 1.153 -0.370 -1.355 1.818 sum -1.422 6.647 12.277 14.033 Atomic orbital electron populations 1.20933 0.91393 1.01717 1.02532 1.22856 0.96787 0.95422 0.88453 1.21060 1.00341 0.92746 1.03618 1.22511 1.00814 0.91643 1.12184 1.18929 0.87326 0.84854 0.76037 1.90683 1.14619 1.87762 1.52794 1.45589 1.09991 1.05317 1.72945 1.21439 0.94212 0.85168 0.93950 1.21877 0.98594 0.99922 0.94101 1.22744 0.93187 1.01013 0.96973 1.21856 0.97806 1.01968 0.93210 1.21056 0.94795 0.93997 0.86529 0.96822 1.43811 1.09198 1.69400 1.09609 1.19409 0.88086 1.32235 0.96207 0.89338 1.25612 1.01306 1.01437 0.97477 1.70163 1.33620 1.47054 1.09343 0.85127 0.79915 0.76510 0.78069 1.21788 1.22623 1.18853 1.21651 0.84692 0.95291 0.91470 1.22650 0.97182 1.01608 0.95500 0.91359 0.90586 0.92511 0.89761 0.89288 0.90096 0.84580 0.76517 0.91906 0.90382 0.90176 0.89806 0.91717 0.91024 0.94652 0.98457 0.95583 0.90690 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 8.33 71.23 0.59 -2.25 16 2 C -0.03 -0.82 6.11 -17.62 -0.11 -0.93 16 3 C -0.12 -2.01 9.99 71.24 0.71 -1.29 16 4 C -0.25 -7.27 9.63 23.43 0.23 -7.05 16 5 C 0.54 19.22 7.11 86.57 0.62 19.84 16 6 O -0.58 -22.78 11.23 -4.08 -0.05 -22.83 16 7 N -0.69 -24.88 4.52 -423.20 -1.91 -26.79 16 8 C 0.14 5.18 0.42 4.32 0.00 5.18 16 9 C -0.11 -3.16 6.16 30.94 0.19 -2.97 16 10 C -0.10 -2.52 6.94 32.66 0.23 -2.29 16 11 C -0.11 -3.42 6.47 30.93 0.20 -3.22 16 12 C 0.15 5.79 2.66 46.47 0.12 5.91 16 13 H 0.01 0.60 7.98 -2.39 -0.02 0.58 16 14 N -0.60 -29.91 3.18 -668.28 -2.12 -32.03 16 15 C -0.23 -12.44 10.29 84.03 0.86 -11.57 16 16 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 17 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 18 N -0.95 -57.73 10.55 21.65 0.23 -57.50 16 19 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.19 10.01 5.35 86.94 0.47 10.48 16 24 C -0.13 -5.54 6.09 31.43 0.19 -5.35 16 25 H 0.07 1.94 7.31 -2.38 -0.02 1.92 16 26 H 0.08 1.48 7.93 -2.38 -0.02 1.46 16 27 H 0.06 1.80 7.15 -2.39 -0.02 1.78 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.12 8.03 -2.39 -0.02 1.10 16 30 H 0.08 1.17 8.06 -2.38 -0.02 1.15 16 31 H 0.14 3.42 8.04 -2.91 -0.02 3.39 16 32 H 0.40 14.25 7.59 -92.71 -0.70 13.54 16 33 H 0.06 1.92 7.73 -2.39 -0.02 1.90 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 2.02 7.20 -2.39 -0.02 2.00 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.00 -0.16 7.99 -2.39 -0.02 -0.18 16 41 H 0.03 1.52 7.05 -2.39 -0.02 1.51 16 42 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.07 2.94 6.27 -2.39 -0.01 2.93 16 Total: -1.00 -67.41 334.71 3.23 -64.18 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.29 Total: 26.44 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.77 Total: 1.29 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.81 Total: -116.32 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.41 3.23 -64.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.111 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds