Wall clock time and date at job start Tue Mar 31 2020 00:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50708 * 120.00177 * 2 1 4 4 C 1.32991 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00041 * 352.73462 * 4 2 1 6 6 O 1.21616 * 119.99806 * 353.25136 * 5 4 2 7 7 N 1.34775 * 120.00132 * 173.25968 * 5 4 2 8 8 C 1.46499 * 119.99679 * 180.02562 * 7 5 4 9 9 C 1.51219 * 111.07232 * 68.33404 * 8 7 5 10 10 C 1.55694 * 104.60567 * 83.87485 * 9 8 7 11 11 C 1.55848 * 105.70786 * 6.81117 * 10 9 8 12 12 C 1.50519 * 101.95709 * 24.98631 * 11 10 9 13 13 H 1.09004 * 108.14134 * 66.08252 * 12 11 10 14 14 N 1.42707 * 128.15213 * 198.50866 * 12 11 10 15 15 C 1.36939 * 127.10349 * 331.04436 * 14 12 11 16 16 H 1.07997 * 119.99803 * 13.16829 * 15 14 12 17 17 C 1.38805 * 119.99894 * 193.16393 * 15 14 12 18 18 N 1.31621 * 120.00310 * 35.77244 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 215.77465 * 17 15 14 20 20 H 1.48501 * 109.47243 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46922 * 299.99941 * 19 17 15 22 22 H 1.48499 * 109.47379 * 60.00155 * 19 17 15 23 23 C 1.49293 * 105.79466 * 151.30794 * 14 12 11 24 24 C 1.52137 * 111.48643 * 288.51460 * 8 7 5 25 25 H 1.09006 * 109.47062 * 264.28573 * 1 2 3 26 26 H 1.09002 * 109.47102 * 24.28434 * 1 2 3 27 27 H 1.08998 * 109.47456 * 144.28602 * 1 2 3 28 28 H 1.09000 * 109.46999 * 240.00372 * 3 2 1 29 29 H 1.08999 * 109.47120 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.46804 * 120.00408 * 3 2 1 31 31 H 1.08002 * 120.00211 * 172.72931 * 4 2 1 32 32 H 0.96998 * 120.00460 * 359.97438 * 7 5 4 33 33 H 1.09001 * 110.41054 * 202.65301 * 9 8 7 34 34 H 1.08995 * 110.41213 * 324.97753 * 9 8 7 35 35 H 1.08994 * 110.16311 * 126.36933 * 10 9 8 36 36 H 1.09000 * 110.15572 * 248.06202 * 10 9 8 37 37 H 1.09002 * 111.03258 * 266.73749 * 11 10 9 38 38 H 1.09003 * 110.72207 * 143.10407 * 11 10 9 39 39 H 0.96997 * 119.99688 * 6.24811 * 18 17 15 40 40 H 1.08996 * 110.05142 * 110.33599 * 23 14 12 41 41 H 1.08993 * 110.04924 * 231.81704 * 23 14 12 42 42 H 1.09000 * 111.14656 * 43.78608 * 24 8 7 43 43 H 1.08998 * 111.14698 * 167.96403 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4453 -2.4207 0.1600 6 8 0.2563 -2.4124 0.4155 7 7 2.0972 -3.5924 0.0241 8 6 1.3734 -4.8561 0.1835 9 6 0.3903 -5.0657 -0.9462 10 6 1.2386 -5.6862 -2.0949 11 6 2.6449 -5.9587 -1.4809 12 6 2.3248 -6.0951 -0.0165 13 1 1.7162 -6.9897 0.1160 14 7 3.2157 -5.9946 1.0938 15 6 4.5520 -6.2930 1.1103 16 1 5.0839 -6.4405 0.1820 17 6 5.2230 -6.4059 2.3201 18 7 4.6118 -6.9201 3.3663 19 14 6.9936 -5.8281 2.4636 20 1 7.4784 -6.0570 3.8484 21 1 7.8413 -6.5889 1.5107 22 1 7.0689 -4.3795 2.1455 23 6 2.3885 -5.5030 2.2353 24 6 1.0001 -5.1050 1.6372 25 1 -0.3633 -0.1023 1.0226 26 1 -0.3633 0.9368 -0.4227 27 1 -0.3634 -0.8344 -0.5999 28 1 2.8871 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8900 31 1 3.2454 -1.1554 -0.1189 32 1 3.0455 -3.5991 -0.1799 33 1 -0.3980 -5.7541 -0.6414 34 1 -0.0378 -4.1135 -1.2593 35 1 0.7832 -6.6148 -2.4389 36 1 1.3239 -4.9813 -2.9218 37 1 3.3178 -5.1194 -1.6565 38 1 3.0657 -6.8834 -1.8760 39 1 3.7256 -7.3028 3.2706 40 1 2.2663 -6.2934 2.9758 41 1 2.8605 -4.6328 2.6913 42 1 0.6129 -4.1995 2.1043 43 1 0.2880 -5.9255 1.7254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278431479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:09 Heat of formation + Delta-G solvation = 11.806680 kcal Electronic energy + Delta-G solvation = -23104.982109 eV Core-core repulsion = 19958.282927 eV Total energy + Delta-G solvation = -3146.699182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.56479 -38.52110 -35.28064 -34.63795 -33.04662 -31.84347 -29.98733 -27.95633 -27.59339 -26.83090 -25.81333 -23.87558 -21.71924 -20.63026 -19.72973 -18.77316 -18.47370 -17.10623 -16.58812 -15.71129 -14.96919 -14.79696 -14.52989 -14.13040 -14.03238 -13.72619 -13.65050 -13.30423 -12.80925 -12.73308 -12.40652 -12.29547 -12.01045 -11.81446 -11.68842 -11.48770 -11.37490 -10.88176 -10.77540 -10.71754 -10.47582 -10.29753 -10.12073 -10.00973 -9.68210 -9.56253 -9.10631 -9.00233 -8.40944 -8.33470 -6.98475 -6.17366 -3.12019 1.54025 3.48079 3.52886 3.63870 3.70329 3.71886 4.45984 4.62799 4.84156 4.89254 5.09646 5.18891 5.29263 5.32951 5.41651 5.52139 5.55483 5.66068 5.68559 5.72296 5.76060 5.81023 5.90087 5.92897 6.00775 6.13247 6.17314 6.25361 6.29242 6.36449 6.43756 6.53120 6.57625 6.64571 6.66692 6.82200 6.96662 7.07738 7.21196 7.78415 8.10331 8.42550 8.73643 8.98159 9.77946 10.40520 11.14903 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.006359 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.810321 B = 4402.476980 C = 5344.427234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.227 4.227 5 C 0.543 3.457 6 O -0.551 6.551 7 N -0.689 5.689 8 C 0.133 3.867 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.159 3.841 13 H 0.019 0.981 14 N -0.581 5.581 15 C -0.349 4.349 16 H 0.069 0.931 17 C -0.017 4.017 18 N -0.899 5.899 19 Si 1.050 2.950 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.295 1.295 23 C 0.145 3.855 24 C -0.125 4.125 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.269 0.731 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 10.879 -9.138 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.047 4.047 3 C -0.182 4.182 4 C -0.248 4.248 5 C 0.333 3.667 6 O -0.432 6.432 7 N -0.338 5.338 8 C 0.045 3.955 9 C -0.149 4.149 10 C -0.155 4.155 11 C -0.150 4.150 12 C 0.049 3.951 13 H 0.036 0.964 14 N -0.305 5.305 15 C -0.475 4.475 16 H 0.086 0.914 17 C -0.221 4.221 18 N -0.539 5.539 19 Si 0.880 3.120 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.020 3.980 24 C -0.164 4.164 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.899 11.013 -7.873 14.767 hybrid contribution -0.556 -0.344 -1.103 1.282 sum -6.455 10.669 -8.976 15.364 Atomic orbital electron populations 1.21110 0.91014 1.01871 1.03489 1.22459 0.96762 0.94285 0.91224 1.20981 1.00150 0.94283 1.02739 1.22462 1.00321 0.92474 1.09555 1.18449 0.86919 0.84143 0.77212 1.90698 1.15285 1.87785 1.49455 1.45652 1.13098 1.04453 1.70632 1.21444 0.94421 0.85490 0.94125 1.21855 0.97119 1.01039 0.94884 1.22741 0.95165 1.00015 0.97532 1.21714 0.96218 1.01406 0.95659 1.20773 0.91147 0.93490 0.89705 0.96420 1.43689 1.05835 1.75969 1.05026 1.19592 0.82321 1.50650 0.94956 0.91362 1.25567 1.05043 0.98825 0.92645 1.70797 1.15985 1.33137 1.33943 0.83742 0.75986 0.76533 0.75761 1.21224 1.22037 1.22237 1.22111 0.88060 0.97140 0.90647 1.22548 0.97946 1.01012 0.94913 0.90550 0.93238 0.89362 0.90920 0.91494 0.90697 0.85960 0.76112 0.91293 0.91134 0.91909 0.92249 0.91631 0.91865 0.92009 0.94226 0.94496 0.91033 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.43 36.00 0.30 -1.17 16 2 C -0.05 -0.55 6.11 -101.17 -0.62 -1.17 16 3 C -0.12 -1.12 10.06 36.01 0.36 -0.76 16 4 C -0.23 -3.19 9.67 -37.81 -0.37 -3.55 16 5 C 0.54 9.19 6.93 -12.66 -0.09 9.10 16 6 O -0.55 -10.24 11.46 5.26 0.06 -10.18 16 7 N -0.69 -12.02 4.39 -47.74 -0.21 -12.23 16 8 C 0.13 2.42 0.40 -130.71 -0.05 2.37 16 9 C -0.11 -1.75 6.03 -26.19 -0.16 -1.91 16 10 C -0.12 -1.67 6.93 -23.78 -0.16 -1.84 16 11 C -0.11 -1.90 6.42 -26.45 -0.17 -2.07 16 12 C 0.16 3.22 2.64 -68.72 -0.18 3.04 16 13 H 0.02 0.40 7.98 -51.93 -0.41 -0.02 16 14 N -0.58 -14.08 3.04 -162.62 -0.49 -14.58 16 15 C -0.35 -9.42 9.96 -15.06 -0.15 -9.57 16 16 H 0.07 1.84 8.03 -52.49 -0.42 1.42 16 17 C -0.02 -0.49 5.09 -17.43 -0.09 -0.57 16 18 N -0.90 -26.80 12.98 55.49 0.72 -26.08 16 19 Si 1.05 24.81 30.04 -169.99 -5.11 19.71 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.14 3.39 5.82 -0.70 0.00 3.39 16 24 C -0.13 -2.46 6.22 -25.38 -0.16 -2.62 16 25 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 26 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 27 H 0.09 1.27 6.18 -51.93 -0.32 0.95 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.40 7.12 7.72 -40.82 -0.32 6.80 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.16 6.84 -51.93 -0.36 0.80 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.11 7.28 -51.93 -0.38 0.74 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.27 8.09 6.43 -40.82 -0.26 7.83 16 40 H 0.04 1.01 6.37 -51.93 -0.33 0.67 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.43 7.19 -51.93 -0.37 1.06 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.32 334.96 -8.52 -38.84 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.01 Total: 6.81 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.53 Total: -7.33 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.02 Total: -52.89 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.11 Total: 19.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.32 -8.52 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.650 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds