Wall clock time and date at job start Tue Mar 31 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50708 * 120.00177 * 2 1 4 4 C 1.32991 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00041 * 352.73462 * 4 2 1 6 6 O 1.21616 * 119.99806 * 353.25136 * 5 4 2 7 7 N 1.34775 * 120.00132 * 173.25968 * 5 4 2 8 8 C 1.46499 * 119.99679 * 180.02562 * 7 5 4 9 9 C 1.51219 * 111.07232 * 68.33404 * 8 7 5 10 10 C 1.55694 * 104.60567 * 83.87485 * 9 8 7 11 11 C 1.55848 * 105.70786 * 6.81117 * 10 9 8 12 12 C 1.50519 * 101.95709 * 24.98631 * 11 10 9 13 13 H 1.09004 * 108.14134 * 66.08252 * 12 11 10 14 14 N 1.42707 * 128.15213 * 198.50866 * 12 11 10 15 15 C 1.36939 * 127.10349 * 331.04436 * 14 12 11 16 16 H 1.07997 * 119.99803 * 13.16829 * 15 14 12 17 17 C 1.38805 * 119.99894 * 193.16393 * 15 14 12 18 18 N 1.31621 * 120.00310 * 35.77244 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 215.77465 * 17 15 14 20 20 H 1.48501 * 109.47243 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46922 * 299.99941 * 19 17 15 22 22 H 1.48499 * 109.47379 * 60.00155 * 19 17 15 23 23 C 1.49293 * 105.79466 * 151.30794 * 14 12 11 24 24 C 1.52137 * 111.48643 * 288.51460 * 8 7 5 25 25 H 1.09006 * 109.47062 * 264.28573 * 1 2 3 26 26 H 1.09002 * 109.47102 * 24.28434 * 1 2 3 27 27 H 1.08998 * 109.47456 * 144.28602 * 1 2 3 28 28 H 1.09000 * 109.46999 * 240.00372 * 3 2 1 29 29 H 1.08999 * 109.47120 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.46804 * 120.00408 * 3 2 1 31 31 H 1.08002 * 120.00211 * 172.72931 * 4 2 1 32 32 H 0.96998 * 120.00460 * 359.97438 * 7 5 4 33 33 H 1.09001 * 110.41054 * 202.65301 * 9 8 7 34 34 H 1.08995 * 110.41213 * 324.97753 * 9 8 7 35 35 H 1.08994 * 110.16311 * 126.36933 * 10 9 8 36 36 H 1.09000 * 110.15572 * 248.06202 * 10 9 8 37 37 H 1.09002 * 111.03258 * 266.73749 * 11 10 9 38 38 H 1.09003 * 110.72207 * 143.10407 * 11 10 9 39 39 H 0.96997 * 119.99688 * 6.24811 * 18 17 15 40 40 H 1.08996 * 110.05142 * 110.33599 * 23 14 12 41 41 H 1.08993 * 110.04924 * 231.81704 * 23 14 12 42 42 H 1.09000 * 111.14656 * 43.78608 * 24 8 7 43 43 H 1.08998 * 111.14698 * 167.96403 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4453 -2.4207 0.1600 6 8 0.2563 -2.4124 0.4155 7 7 2.0972 -3.5924 0.0241 8 6 1.3734 -4.8561 0.1835 9 6 0.3903 -5.0657 -0.9462 10 6 1.2386 -5.6862 -2.0949 11 6 2.6449 -5.9587 -1.4809 12 6 2.3248 -6.0951 -0.0165 13 1 1.7162 -6.9897 0.1160 14 7 3.2157 -5.9946 1.0938 15 6 4.5520 -6.2930 1.1103 16 1 5.0839 -6.4405 0.1820 17 6 5.2230 -6.4059 2.3201 18 7 4.6118 -6.9201 3.3663 19 14 6.9936 -5.8281 2.4636 20 1 7.4784 -6.0570 3.8484 21 1 7.8413 -6.5889 1.5107 22 1 7.0689 -4.3795 2.1455 23 6 2.3885 -5.5030 2.2353 24 6 1.0001 -5.1050 1.6372 25 1 -0.3633 -0.1023 1.0226 26 1 -0.3633 0.9368 -0.4227 27 1 -0.3634 -0.8344 -0.5999 28 1 2.8871 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8900 31 1 3.2454 -1.1554 -0.1189 32 1 3.0455 -3.5991 -0.1799 33 1 -0.3980 -5.7541 -0.6414 34 1 -0.0378 -4.1135 -1.2593 35 1 0.7832 -6.6148 -2.4389 36 1 1.3239 -4.9813 -2.9218 37 1 3.3178 -5.1194 -1.6565 38 1 3.0657 -6.8834 -1.8760 39 1 3.7256 -7.3028 3.2706 40 1 2.2663 -6.2934 2.9758 41 1 2.8605 -4.6328 2.6913 42 1 0.6129 -4.1995 2.1043 43 1 0.2880 -5.9255 1.7254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278431479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:08 Heat of formation + Delta-G solvation = -5.869752 kcal Electronic energy + Delta-G solvation = -23105.748616 eV Core-core repulsion = 19958.282927 eV Total energy + Delta-G solvation = -3147.465690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.04769 -39.88248 -36.58451 -36.13682 -34.46322 -33.69252 -31.68297 -28.97325 -28.57262 -28.43867 -27.30190 -25.82719 -23.03741 -22.20098 -21.41262 -20.19944 -19.66565 -19.00305 -17.81514 -17.26358 -16.35827 -16.32496 -16.06389 -15.53750 -15.44920 -15.18934 -14.90690 -14.70683 -14.32420 -14.16163 -13.60795 -13.44403 -13.31884 -13.22727 -12.98694 -12.68381 -12.52654 -12.45318 -12.34775 -12.25882 -12.16560 -11.96165 -11.83239 -11.64145 -11.43442 -11.16669 -10.49623 -10.32165 -10.13224 -9.72657 -9.02322 -8.36165 -5.26650 0.47069 1.57585 1.64630 1.83332 2.34772 2.43304 2.63341 2.96582 3.12062 3.64104 3.78512 3.85782 3.96579 3.98303 4.11646 4.21295 4.28800 4.37638 4.41395 4.52346 4.61203 4.69283 4.71293 4.82343 4.83770 4.87280 4.90301 4.93662 4.99034 5.03061 5.05540 5.13301 5.15877 5.22337 5.33466 5.44973 5.57264 5.67205 5.73294 5.80791 6.26115 6.75133 6.86275 7.40645 7.69504 8.37964 8.95962 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.006359 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.810321 B = 4402.476980 C = 5344.427234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.124 4.124 4 C -0.255 4.255 5 C 0.539 3.461 6 O -0.573 6.573 7 N -0.692 5.692 8 C 0.144 3.856 9 C -0.105 4.105 10 C -0.102 4.102 11 C -0.107 4.107 12 C 0.144 3.856 13 H 0.006 0.994 14 N -0.594 5.594 15 C -0.345 4.345 16 H 0.069 0.931 17 C -0.074 4.074 18 N -0.933 5.933 19 Si 1.103 2.897 20 H -0.298 1.298 21 H -0.273 1.273 22 H -0.281 1.281 23 C 0.154 3.846 24 C -0.114 4.114 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.401 0.599 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.252 0.748 40 H 0.012 0.988 41 H 0.009 0.991 42 H 0.067 0.933 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 12.810 -11.328 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.180 4.180 4 C -0.276 4.276 5 C 0.331 3.669 6 O -0.456 6.456 7 N -0.342 5.342 8 C 0.056 3.944 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.146 4.146 12 C 0.036 3.964 13 H 0.024 0.976 14 N -0.318 5.318 15 C -0.472 4.472 16 H 0.087 0.913 17 C -0.271 4.271 18 N -0.575 5.575 19 Si 0.928 3.072 20 H -0.225 1.225 21 H -0.199 1.199 22 H -0.207 1.207 23 C 0.028 3.972 24 C -0.153 4.153 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.237 0.763 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.819 12.955 -10.111 17.434 hybrid contribution -0.671 -0.914 -0.423 1.211 sum -6.491 12.041 -10.534 17.265 Atomic orbital electron populations 1.21090 0.91318 1.02582 1.02549 1.22854 0.96814 0.95270 0.87871 1.21066 1.00534 0.92679 1.03710 1.22440 1.00918 0.91578 1.12644 1.18937 0.86819 0.84761 0.76423 1.90686 1.16244 1.88125 1.50536 1.45683 1.12970 1.04477 1.71068 1.21372 0.94309 0.85096 0.93657 1.21845 0.96916 1.01345 0.94272 1.22675 0.92827 1.01376 0.97117 1.21727 0.98148 1.01522 0.93168 1.21003 0.90746 0.94000 0.90695 0.97636 1.43809 1.05715 1.75738 1.06518 1.19845 0.83697 1.48914 0.94788 0.91300 1.26901 1.08529 0.98974 0.92672 1.70925 1.15696 1.35947 1.34937 0.83019 0.71813 0.76899 0.75421 1.22457 1.19871 1.20700 1.21926 0.89897 0.94993 0.90334 1.22442 0.95733 1.01075 0.96080 0.91685 0.90293 0.91435 0.89278 0.89647 0.90128 0.84707 0.76307 0.90421 0.91308 0.89943 0.90228 0.91549 0.91806 0.93793 0.97024 0.97257 0.91478 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.43 71.23 0.60 -2.15 16 2 C -0.03 -0.58 6.11 -17.62 -0.11 -0.69 16 3 C -0.12 -1.79 10.06 71.24 0.72 -1.07 16 4 C -0.25 -6.81 9.67 23.43 0.23 -6.59 16 5 C 0.54 17.97 6.93 86.57 0.60 18.57 16 6 O -0.57 -21.14 11.46 -4.08 -0.05 -21.19 16 7 N -0.69 -23.91 4.39 -423.21 -1.86 -25.77 16 8 C 0.14 5.16 0.40 4.32 0.00 5.17 16 9 C -0.11 -3.14 6.03 30.94 0.19 -2.96 16 10 C -0.10 -2.64 6.93 32.51 0.23 -2.42 16 11 C -0.11 -3.49 6.42 30.78 0.20 -3.29 16 12 C 0.14 5.83 2.64 46.47 0.12 5.95 16 13 H 0.01 0.27 7.98 -2.39 -0.02 0.25 16 14 N -0.59 -29.43 3.04 -668.42 -2.03 -31.47 16 15 C -0.34 -18.87 9.96 84.03 0.84 -18.04 16 16 H 0.07 3.71 8.03 -2.91 -0.02 3.68 16 17 C -0.07 -4.18 5.09 84.86 0.43 -3.74 16 18 N -0.93 -57.67 12.98 21.65 0.28 -57.39 16 19 Si 1.10 50.53 30.04 68.60 2.06 52.59 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.15 7.51 5.82 86.99 0.51 8.02 16 24 C -0.11 -4.58 6.22 31.47 0.20 -4.38 16 25 H 0.06 1.67 8.02 -2.38 -0.02 1.65 16 26 H 0.08 1.33 7.94 -2.39 -0.02 1.31 16 27 H 0.07 1.87 6.18 -2.39 -0.01 1.86 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.95 7.87 -2.39 -0.02 0.93 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.40 14.04 7.72 -92.71 -0.72 13.33 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.12 6.84 -2.39 -0.02 2.11 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.15 7.28 -2.39 -0.02 2.13 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.25 15.99 6.43 -92.71 -0.60 15.39 16 40 H 0.01 0.64 6.37 -2.39 -0.02 0.62 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 2.74 7.19 -2.39 -0.02 2.72 16 43 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -67.42 334.96 3.59 -63.83 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.45 Total: 27.01 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.74 Total: -7.62 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -3.61 Total: -114.62 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.06 Total: 52.59 kcal Total: -67.42 3.59 -63.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278431479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.958 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds