Wall clock time and date at job start Tue Mar 31 2020 00:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47205 * 2 1 4 4 C 1.50692 * 120.00190 * 274.72434 * 3 2 1 5 5 C 1.32995 * 119.99795 * 95.00180 * 3 2 1 6 6 C 1.47103 * 119.99893 * 187.14596 * 5 3 2 7 7 O 1.21611 * 120.00106 * 7.12792 * 6 5 3 8 8 N 1.34776 * 119.99717 * 187.13175 * 6 5 3 9 9 C 1.46498 * 119.99702 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47235 * 179.97438 * 9 8 6 11 11 C 1.29459 * 117.69464 * 94.99652 * 10 9 8 12 12 C 1.50316 * 123.64963 * 180.86044 * 11 10 9 13 13 N 1.47003 * 109.16917 * 349.02408 * 12 11 10 14 14 C 1.36937 * 121.37618 * 222.97114 * 13 12 11 15 15 H 1.07998 * 120.00060 * 157.31832 * 14 13 12 16 16 C 1.38814 * 119.99991 * 337.31594 * 14 13 12 17 17 N 1.31622 * 119.99817 * 343.12015 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 163.12286 * 16 14 13 19 19 H 1.48506 * 109.47139 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47454 * 119.99897 * 18 16 14 21 21 H 1.48499 * 109.47162 * 239.99742 * 18 16 14 22 22 C 1.47340 * 117.24824 * 42.94715 * 13 12 11 23 23 C 1.49972 * 117.69531 * 274.74154 * 10 9 8 24 24 H 1.09005 * 109.47187 * 60.00152 * 1 2 3 25 25 H 1.09005 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47318 * 299.99954 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00207 * 2 1 3 28 28 H 1.08997 * 109.47151 * 120.00203 * 2 1 3 29 29 H 1.09009 * 109.47423 * 95.52673 * 4 3 2 30 30 H 1.09002 * 109.47678 * 215.52690 * 4 3 2 31 31 H 1.09004 * 109.47291 * 335.53305 * 4 3 2 32 32 H 1.08001 * 119.99847 * 7.13920 * 5 3 2 33 33 H 0.97003 * 120.00294 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47250 * 299.99730 * 9 8 6 35 35 H 1.09000 * 109.47567 * 60.00311 * 9 8 6 36 36 H 1.07998 * 118.17193 * 0.88766 * 11 10 9 37 37 H 1.09003 * 109.52513 * 108.93526 * 12 11 10 38 38 H 1.09013 * 109.52332 * 229.11766 * 12 11 10 39 39 H 0.97005 * 119.99211 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.77372 * 57.81366 * 22 13 12 41 41 H 1.08998 * 109.77684 * 178.61674 * 22 13 12 42 42 H 1.09002 * 109.31200 * 281.28988 * 23 10 9 43 43 H 1.09002 * 109.31001 * 40.71591 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1822 2.1670 -1.3006 5 6 2.3486 2.0142 1.1474 6 6 2.6877 3.4455 1.1662 7 8 2.5541 4.1153 0.1600 8 7 3.1465 4.0145 2.2985 9 6 3.4847 5.4398 2.3171 10 6 3.9692 5.8233 3.6916 11 6 5.2466 5.8204 3.9018 12 6 5.8738 6.1616 5.2246 13 7 4.8505 6.7351 6.1104 14 6 5.1133 7.8318 6.8872 15 1 4.3019 8.4528 7.2369 16 6 6.4226 8.1453 7.2251 17 7 7.3701 7.2408 7.0963 18 14 6.8399 9.8508 7.8626 19 1 5.6062 10.6759 7.9133 20 1 7.4195 9.7418 9.2255 21 1 7.8260 10.4909 6.9553 22 6 3.5301 6.0814 6.1277 23 6 2.9379 6.1871 4.7178 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.2895 2.7663 -1.4807 30 1 3.0533 2.8200 -1.2467 31 1 2.3119 1.4547 -2.1154 32 1 2.3565 1.4453 2.0654 33 1 3.2528 3.4803 3.1012 34 1 4.2696 5.6365 1.5868 35 1 2.6006 6.0264 2.0672 36 1 5.8978 5.5586 3.0810 37 1 6.2831 5.2585 5.6775 38 1 6.6725 6.8878 5.0725 39 1 8.2850 7.4599 7.3328 40 1 3.6408 5.0338 6.4079 41 1 2.8774 6.5872 6.8392 42 1 2.5979 7.2076 4.5411 43 1 2.0898 5.5077 4.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279544341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:02 Heat of formation + Delta-G solvation = 4.762784 kcal Electronic energy + Delta-G solvation = -21195.334645 eV Core-core repulsion = 18048.330016 eV Total energy + Delta-G solvation = -3147.004628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82129 -37.87149 -36.38264 -34.83735 -32.88456 -31.24986 -30.83288 -29.74203 -28.19666 -26.60447 -24.61793 -23.75558 -22.74157 -21.24525 -20.79045 -18.88253 -17.66259 -17.04103 -16.03047 -15.60438 -15.29371 -15.00553 -14.67252 -14.50350 -14.10008 -13.82318 -13.60056 -13.47667 -13.22851 -12.97386 -12.62242 -12.39217 -12.23262 -12.00952 -11.78342 -11.64280 -11.56307 -11.35890 -11.20926 -10.93502 -10.75557 -10.38966 -10.29201 -9.83679 -9.67520 -9.54175 -9.34810 -8.78442 -8.69351 -8.05922 -6.78553 -5.81887 -3.19052 1.27859 2.62926 3.33117 3.36846 3.44793 3.46887 3.65159 4.48106 4.50293 4.59265 4.92341 4.98537 5.06366 5.20104 5.29119 5.34822 5.39312 5.40613 5.56906 5.57917 5.62649 5.70041 5.84083 5.85354 5.92896 5.98746 6.06527 6.16554 6.31712 6.35812 6.41627 6.47888 6.60527 6.72005 6.85185 7.15644 7.24794 7.31885 7.69114 7.72265 7.81331 8.35131 8.35665 9.17284 9.80451 10.37752 11.28663 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043510 B = 0.002870 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.372873 B = 9755.270695 C = 9857.129008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.034 4.034 4 C -0.122 4.122 5 C -0.228 4.228 6 C 0.540 3.460 7 O -0.548 6.548 8 N -0.718 5.718 9 C 0.158 3.842 10 C -0.166 4.166 11 C -0.125 4.125 12 C 0.193 3.807 13 N -0.596 5.596 14 C -0.245 4.245 15 H 0.070 0.930 16 C -0.003 4.003 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.144 3.856 23 C -0.090 4.090 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -13.425 -12.412 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.036 4.036 4 C -0.178 4.178 5 C -0.249 4.249 6 C 0.330 3.670 7 O -0.429 6.429 8 N -0.368 5.368 9 C 0.035 3.965 10 C -0.167 4.167 11 C -0.146 4.146 12 C 0.068 3.932 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.201 4.201 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.017 3.983 23 C -0.129 4.129 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.463 -12.872 -13.052 21.107 hybrid contribution 0.448 0.579 0.776 1.067 sum -10.014 -12.293 -12.277 20.052 Atomic orbital electron populations 1.21709 0.94099 1.01979 1.02540 1.20756 0.96620 0.92767 1.03207 1.22514 0.90309 0.95343 0.95457 1.21114 1.04438 0.99364 0.92869 1.22436 1.08971 0.94428 0.99093 1.18580 0.77260 0.88065 0.83119 1.90742 1.54291 1.64898 1.32975 1.46107 1.66194 1.11260 1.13236 1.20426 0.99978 0.80408 0.95658 1.20510 0.95473 1.06083 0.94623 1.23271 0.95425 0.95605 1.00269 1.19770 0.91482 0.97943 0.83966 1.44157 1.08219 1.32698 1.46831 1.19235 0.92346 1.00534 1.25275 0.91240 1.24958 0.96868 0.98176 1.00053 1.70034 1.00974 1.31794 1.52685 0.86188 0.78116 0.84258 0.78036 1.20308 1.21767 1.21576 1.20987 0.88369 0.95697 0.93201 1.20786 0.95644 1.00314 0.96153 0.92345 0.92100 0.92297 0.90650 0.90754 0.90458 0.89306 0.92913 0.85735 0.76457 0.91786 0.91721 0.88803 0.94159 0.88779 0.93657 0.95869 0.92470 0.91725 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.10 -0.68 6.10 -27.89 -0.17 -0.85 16 3 C -0.03 -0.34 5.36 -101.17 -0.54 -0.88 16 4 C -0.12 -1.28 8.47 36.00 0.31 -0.98 16 5 C -0.23 -2.47 9.63 -37.81 -0.36 -2.83 16 6 C 0.54 7.53 7.59 -12.66 -0.10 7.43 16 7 O -0.55 -9.19 13.32 5.27 0.07 -9.12 16 8 N -0.72 -9.67 5.54 -62.67 -0.35 -10.02 16 9 C 0.16 2.42 5.66 -5.19 -0.03 2.39 16 10 C -0.17 -2.86 5.22 -100.99 -0.53 -3.39 16 11 C -0.12 -2.38 9.47 -35.78 -0.34 -2.72 16 12 C 0.19 4.55 5.25 -5.11 -0.03 4.52 16 13 N -0.60 -14.78 3.01 -173.56 -0.52 -15.31 16 14 C -0.24 -6.67 9.71 -15.06 -0.15 -6.82 16 15 H 0.07 1.86 7.88 -52.49 -0.41 1.45 16 16 C 0.00 -0.08 4.99 -17.43 -0.09 -0.17 16 17 N -0.91 -26.06 11.07 55.49 0.61 -25.45 16 18 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.14 2.94 6.59 -3.44 -0.02 2.92 16 23 C -0.09 -1.56 5.95 -28.09 -0.17 -1.73 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 28 H 0.07 0.47 7.99 -51.93 -0.41 0.05 16 29 H 0.08 0.87 8.03 -51.92 -0.42 0.45 16 30 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 31 H 0.05 0.44 8.03 -51.93 -0.42 0.02 16 32 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16 33 H 0.40 4.76 8.45 -40.82 -0.34 4.41 16 34 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 35 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.09 1.62 7.73 -52.49 -0.41 1.21 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 2.48 6.35 -51.92 -0.33 2.15 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -30.48 349.59 -9.03 -39.50 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.23 Total: 2.16 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.85 Total: -3.67 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.26 Total: -50.77 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.48 -9.03 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279544341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds