Wall clock time and date at job start Tue Mar 31 2020 00:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47205 * 2 1 4 4 C 1.50692 * 120.00190 * 274.72434 * 3 2 1 5 5 C 1.32995 * 119.99795 * 95.00180 * 3 2 1 6 6 C 1.47103 * 119.99893 * 187.14596 * 5 3 2 7 7 O 1.21611 * 120.00106 * 7.12792 * 6 5 3 8 8 N 1.34776 * 119.99717 * 187.13175 * 6 5 3 9 9 C 1.46498 * 119.99702 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47235 * 179.97438 * 9 8 6 11 11 C 1.29459 * 117.69464 * 94.99652 * 10 9 8 12 12 C 1.50316 * 123.64963 * 180.86044 * 11 10 9 13 13 N 1.47003 * 109.16917 * 349.02408 * 12 11 10 14 14 C 1.36937 * 121.37618 * 222.97114 * 13 12 11 15 15 H 1.07998 * 120.00060 * 157.31832 * 14 13 12 16 16 C 1.38814 * 119.99991 * 337.31594 * 14 13 12 17 17 N 1.31622 * 119.99817 * 343.12015 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 163.12286 * 16 14 13 19 19 H 1.48506 * 109.47139 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47454 * 119.99897 * 18 16 14 21 21 H 1.48499 * 109.47162 * 239.99742 * 18 16 14 22 22 C 1.47340 * 117.24824 * 42.94715 * 13 12 11 23 23 C 1.49972 * 117.69531 * 274.74154 * 10 9 8 24 24 H 1.09005 * 109.47187 * 60.00152 * 1 2 3 25 25 H 1.09005 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47318 * 299.99954 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00207 * 2 1 3 28 28 H 1.08997 * 109.47151 * 120.00203 * 2 1 3 29 29 H 1.09009 * 109.47423 * 95.52673 * 4 3 2 30 30 H 1.09002 * 109.47678 * 215.52690 * 4 3 2 31 31 H 1.09004 * 109.47291 * 335.53305 * 4 3 2 32 32 H 1.08001 * 119.99847 * 7.13920 * 5 3 2 33 33 H 0.97003 * 120.00294 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47250 * 299.99730 * 9 8 6 35 35 H 1.09000 * 109.47567 * 60.00311 * 9 8 6 36 36 H 1.07998 * 118.17193 * 0.88766 * 11 10 9 37 37 H 1.09003 * 109.52513 * 108.93526 * 12 11 10 38 38 H 1.09013 * 109.52332 * 229.11766 * 12 11 10 39 39 H 0.97005 * 119.99211 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.77372 * 57.81366 * 22 13 12 41 41 H 1.08998 * 109.77684 * 178.61674 * 22 13 12 42 42 H 1.09002 * 109.31200 * 281.28988 * 23 10 9 43 43 H 1.09002 * 109.31001 * 40.71591 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1822 2.1670 -1.3006 5 6 2.3486 2.0142 1.1474 6 6 2.6877 3.4455 1.1662 7 8 2.5541 4.1153 0.1600 8 7 3.1465 4.0145 2.2985 9 6 3.4847 5.4398 2.3171 10 6 3.9692 5.8233 3.6916 11 6 5.2466 5.8204 3.9018 12 6 5.8738 6.1616 5.2246 13 7 4.8505 6.7351 6.1104 14 6 5.1133 7.8318 6.8872 15 1 4.3019 8.4528 7.2369 16 6 6.4226 8.1453 7.2251 17 7 7.3701 7.2408 7.0963 18 14 6.8399 9.8508 7.8626 19 1 5.6062 10.6759 7.9133 20 1 7.4195 9.7418 9.2255 21 1 7.8260 10.4909 6.9553 22 6 3.5301 6.0814 6.1277 23 6 2.9379 6.1871 4.7178 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.2895 2.7663 -1.4807 30 1 3.0533 2.8200 -1.2467 31 1 2.3119 1.4547 -2.1154 32 1 2.3565 1.4453 2.0654 33 1 3.2528 3.4803 3.1012 34 1 4.2696 5.6365 1.5868 35 1 2.6006 6.0264 2.0672 36 1 5.8978 5.5586 3.0810 37 1 6.2831 5.2585 5.6775 38 1 6.6725 6.8878 5.0725 39 1 8.2850 7.4599 7.3328 40 1 3.6408 5.0338 6.4079 41 1 2.8774 6.5872 6.8392 42 1 2.5979 7.2076 4.5411 43 1 2.0898 5.5077 4.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279544341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:01 Heat of formation + Delta-G solvation = -12.954248 kcal Electronic energy + Delta-G solvation = -21196.102913 eV Core-core repulsion = 18048.330016 eV Total energy + Delta-G solvation = -3147.772896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91957 -39.41477 -37.25886 -36.23937 -34.52259 -32.69196 -31.78953 -31.42112 -29.32960 -28.01607 -25.98891 -24.78195 -24.32638 -22.87679 -21.86453 -19.84859 -19.42699 -18.10466 -17.40568 -17.08597 -16.78205 -16.30183 -15.79447 -15.51169 -15.31865 -15.27394 -15.13017 -14.68081 -14.49524 -13.98575 -13.95753 -13.71608 -13.33568 -13.24007 -13.01322 -12.90966 -12.81653 -12.61462 -12.57991 -12.25421 -12.19831 -12.08414 -11.73782 -11.70962 -11.27967 -10.72026 -10.65239 -10.27865 -9.81594 -9.65114 -8.78076 -7.89590 -5.29127 0.42718 1.18941 1.45735 1.48079 1.58063 2.32624 2.50541 2.54004 3.27390 3.61216 3.76219 3.86881 3.92246 3.96320 4.27128 4.34982 4.43145 4.46365 4.52438 4.64050 4.67572 4.73672 4.78023 4.82894 4.85104 4.90745 5.05536 5.08906 5.11024 5.15744 5.20309 5.36390 5.37887 5.46661 5.47921 5.60072 5.61115 5.63811 5.76283 6.15483 6.32357 6.65333 7.12268 7.30318 7.82599 8.35844 9.19285 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043510 B = 0.002870 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.372873 B = 9755.270695 C = 9857.129008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.025 4.025 4 C -0.122 4.122 5 C -0.242 4.242 6 C 0.536 3.464 7 O -0.582 6.582 8 N -0.712 5.712 9 C 0.169 3.831 10 C -0.138 4.138 11 C -0.143 4.143 12 C 0.205 3.795 13 N -0.616 5.616 14 C -0.255 4.255 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.939 5.939 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.139 3.861 23 C -0.084 4.084 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.411 0.589 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.250 0.750 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 -14.692 -13.152 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.026 4.026 4 C -0.178 4.178 5 C -0.263 4.263 6 C 0.327 3.673 7 O -0.466 6.466 8 N -0.363 5.363 9 C 0.045 3.955 10 C -0.139 4.139 11 C -0.163 4.163 12 C 0.080 3.920 13 N -0.340 5.340 14 C -0.385 4.385 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.586 5.586 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.219 1.219 22 C 0.014 3.986 23 C -0.122 4.122 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.301 -14.162 -13.783 23.277 hybrid contribution 0.918 0.919 0.960 1.615 sum -11.383 -13.243 -12.823 21.665 Atomic orbital electron populations 1.21715 0.93592 1.02928 1.02055 1.20823 0.96856 0.90801 1.04578 1.22815 0.88598 0.96631 0.94605 1.21069 1.02794 0.99542 0.94442 1.22481 1.10396 0.92748 1.00651 1.19115 0.76479 0.89276 0.82412 1.90736 1.55772 1.65961 1.34085 1.45968 1.66103 1.10414 1.13819 1.20179 0.99744 0.81724 0.93833 1.20622 0.94709 1.03204 0.95380 1.22938 0.96393 0.98331 0.98685 1.19409 0.90924 0.95751 0.85942 1.44442 1.09873 1.32765 1.46921 1.19558 0.92534 1.01419 1.25005 0.91104 1.25709 0.96903 1.01388 1.01057 1.70186 1.00971 1.33401 1.54068 0.85202 0.77893 0.80308 0.77039 1.19165 1.21873 1.21873 1.21178 0.86540 0.95581 0.95324 1.20724 0.96405 1.01192 0.93925 0.92748 0.90458 0.92925 0.89281 0.89439 0.91418 0.91861 0.90624 0.83253 0.75286 0.92344 0.91597 0.87140 0.96788 0.92406 0.94123 0.95269 0.92192 0.91852 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 71.98 0.71 -0.76 16 2 C -0.09 -1.01 6.10 29.85 0.18 -0.83 16 3 C -0.02 -0.43 5.36 -17.62 -0.09 -0.52 16 4 C -0.12 -2.43 8.47 71.23 0.60 -1.82 16 5 C -0.24 -4.69 9.63 23.43 0.23 -4.46 16 6 C 0.54 14.14 7.59 86.57 0.66 14.80 16 7 O -0.58 -19.21 13.32 -4.07 -0.05 -19.26 16 8 N -0.71 -17.75 5.54 -470.45 -2.61 -20.36 16 9 C 0.17 4.87 5.66 85.63 0.48 5.35 16 10 C -0.14 -4.55 5.22 -15.14 -0.08 -4.63 16 11 C -0.14 -5.41 9.47 27.10 0.26 -5.15 16 12 C 0.20 9.92 5.25 85.42 0.45 10.37 16 13 N -0.62 -30.86 3.01 -703.03 -2.12 -32.97 16 14 C -0.26 -14.05 9.71 84.03 0.82 -13.24 16 15 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 16 C -0.06 -3.13 4.99 84.86 0.42 -2.71 16 17 N -0.94 -55.50 11.07 21.65 0.24 -55.26 16 18 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 C 0.14 5.52 6.59 86.31 0.57 6.09 16 23 C -0.08 -2.72 5.95 29.71 0.18 -2.55 16 24 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 28 H 0.09 0.77 7.99 -2.39 -0.02 0.75 16 29 H 0.07 1.48 8.03 -2.38 -0.02 1.46 16 30 H 0.06 1.61 6.17 -2.39 -0.01 1.60 16 31 H 0.07 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.15 2.09 7.99 -2.91 -0.02 2.07 16 33 H 0.41 8.69 8.45 -92.71 -0.78 7.91 16 34 H 0.06 1.79 7.78 -2.39 -0.02 1.77 16 35 H 0.07 1.93 8.11 -2.39 -0.02 1.92 16 36 H 0.11 3.78 7.73 -2.91 -0.02 3.76 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 3.19 6.35 -2.38 -0.02 3.17 16 39 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.06 349.59 3.07 -63.98 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.20 Total: 16.74 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.38 Total: -0.06 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.48 Total: -108.60 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.06 3.07 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279544341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.029 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds