Wall clock time and date at job start Tue Mar 31 2020 00:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32863 * 1 3 3 C 1.47117 * 120.00067 * 2 1 4 4 C 1.50700 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.32873 * 120.00007 * 179.97438 * 3 2 1 6 6 C 1.50706 * 119.99693 * 186.12909 * 5 3 2 7 7 C 1.50704 * 109.46823 * 125.96488 * 6 5 3 8 8 O 1.21276 * 120.00227 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99637 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47511 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.84885 * 316.19946 * 11 10 9 13 13 C 1.53786 * 113.68711 * 87.46709 * 11 10 9 14 14 C 1.53786 * 87.08109 * 139.99367 * 13 11 10 15 15 H 1.08998 * 113.68622 * 89.12379 * 14 13 11 16 16 N 1.46494 * 113.61433 * 220.01988 * 14 13 11 17 17 C 1.36937 * 119.99810 * 252.22425 * 16 14 13 18 18 H 1.08005 * 120.00164 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00235 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99814 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00270 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47064 * 59.99931 * 21 19 17 23 23 H 1.48498 * 109.47191 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47209 * 300.00071 * 21 19 17 25 25 C 1.53779 * 113.61515 * 184.99726 * 11 10 9 26 26 H 1.08007 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00258 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00305 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47467 * 213.43710 * 4 3 2 30 30 H 1.09004 * 109.46554 * 333.43338 * 4 3 2 31 31 H 1.09004 * 109.47303 * 93.43080 * 4 3 2 32 32 H 1.07999 * 120.00359 * 6.12456 * 5 3 2 33 33 H 1.08996 * 109.47521 * 5.96427 * 6 5 3 34 34 H 1.09003 * 109.46761 * 245.96037 * 6 5 3 35 35 H 0.97002 * 120.00422 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46934 * 60.00215 * 10 9 7 37 37 H 1.08999 * 109.47592 * 300.00008 * 10 9 7 38 38 H 1.08997 * 113.61745 * 25.44278 * 13 11 10 39 39 H 1.08997 * 113.61315 * 254.54357 * 13 11 10 40 40 H 0.97000 * 120.00420 * 72.49424 * 16 14 13 41 41 H 0.97005 * 120.00321 * 179.97438 * 20 19 17 42 42 H 1.09003 * 113.61050 * 105.38859 * 25 11 10 43 43 H 1.09001 * 113.61837 * 334.49004 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1464 2.5718 0.1399 7 6 5.1197 2.4670 1.2856 8 8 5.1940 1.4399 1.9262 9 7 5.9077 3.5147 1.5983 10 6 6.8535 3.4130 2.7125 11 6 7.6195 4.7301 2.8531 12 1 7.9506 5.1314 1.8954 13 6 6.9107 5.7650 3.7429 14 6 8.2980 6.1128 4.3080 15 1 8.8157 6.8922 3.7489 16 7 8.2997 6.3526 5.7532 17 6 8.4559 7.6245 6.2360 18 1 8.5783 8.4508 5.5513 19 6 8.4570 7.8518 7.6054 20 7 8.3074 6.8450 8.4397 21 14 8.6708 9.5867 8.2640 22 1 7.5711 10.4471 7.7584 23 1 8.6355 9.5606 9.7483 24 1 9.9750 10.1318 7.8088 25 6 8.7266 4.6880 3.9195 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.8720 3.3225 -0.5667 30 1 0.3333 2.4341 -0.4606 31 1 1.1820 2.9249 1.0251 32 1 3.9330 0.3441 -0.0989 33 1 3.4428 3.3814 0.3337 34 1 4.6909 2.7765 -0.7819 35 1 5.8481 4.3363 1.0862 36 1 7.5569 2.6030 2.5192 37 1 6.3087 3.2090 3.6342 38 1 6.2385 5.3218 4.4776 39 1 6.4503 6.5794 3.1836 40 1 8.1942 5.6100 6.3682 41 1 8.3085 7.0037 9.3967 42 1 9.7323 4.6329 3.5027 43 1 8.5509 3.9503 4.7025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316620201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:56 Heat of formation + Delta-G solvation = -5.186507 kcal Electronic energy + Delta-G solvation = -20431.534801 eV Core-core repulsion = 17284.098739 eV Total energy + Delta-G solvation = -3147.436062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92214 -39.81581 -37.80159 -36.02303 -34.98325 -33.43068 -32.17739 -30.07036 -28.58351 -27.15702 -26.44868 -25.69962 -22.72396 -22.17930 -21.16607 -20.38840 -19.04408 -18.77914 -18.10418 -17.22232 -17.06150 -16.57113 -16.27019 -15.94404 -15.45870 -15.14843 -14.99956 -14.60387 -14.54845 -14.11091 -13.75668 -13.39506 -13.26802 -13.22812 -13.00220 -12.90378 -12.62085 -12.51263 -12.30802 -12.24112 -12.07726 -11.74933 -11.57279 -11.54489 -11.38806 -11.10279 -10.86404 -10.76324 -10.04958 -9.11161 -8.97384 -7.93933 -5.22478 0.43135 1.47442 1.50647 1.56738 1.67603 2.03809 2.40882 2.57432 3.37713 3.70619 3.74725 3.77011 3.86937 3.97240 4.04615 4.26529 4.34463 4.36433 4.42373 4.45197 4.48379 4.57959 4.61099 4.76703 4.82440 4.89063 4.98423 4.99706 5.00601 5.06494 5.13995 5.23611 5.38207 5.45774 5.48286 5.54142 5.59838 5.74775 5.79296 6.04922 6.28115 6.62198 7.31368 7.33378 8.12116 8.33677 9.29433 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.002445 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.493717 B =11451.049810 C =11871.727461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.593 6.593 9 N -0.714 5.714 10 C 0.137 3.863 11 C -0.093 4.093 12 H 0.124 0.876 13 C -0.153 4.153 14 C 0.143 3.857 15 H 0.082 0.918 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.299 1.299 24 H -0.276 1.276 25 C -0.139 4.139 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.418 0.582 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -7.905 -23.668 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.112 4.112 4 C -0.182 4.182 5 C -0.159 4.159 6 C -0.145 4.145 7 C 0.296 3.704 8 O -0.474 6.474 9 N -0.366 5.366 10 C 0.013 3.987 11 C -0.112 4.112 12 H 0.142 0.858 13 C -0.193 4.193 14 C 0.033 3.967 15 H 0.100 0.900 16 N -0.368 5.368 17 C -0.375 4.375 18 H 0.098 0.902 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.804 3.196 22 H -0.203 1.203 23 H -0.225 1.225 24 H -0.202 1.202 25 C -0.179 4.179 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.527 -8.403 -23.190 27.226 hybrid contribution 0.196 0.493 1.150 1.267 sum -11.331 -7.910 -22.040 26.013 Atomic orbital electron populations 1.24644 0.95272 1.03179 0.98114 1.22002 0.96069 0.96171 1.01967 1.20840 0.93995 0.95389 1.00983 1.20977 1.00839 0.93795 1.02585 1.22789 0.94284 0.97965 1.00902 1.20812 0.97701 0.98415 0.97565 1.21233 0.81060 0.82624 0.85438 1.90695 1.70077 1.31749 1.54838 1.45931 1.39381 1.17057 1.34273 1.21184 0.90973 0.97623 0.88911 1.22466 0.96096 0.93817 0.98845 0.85759 1.23714 0.98699 0.98598 0.98309 1.21972 0.95387 0.95443 0.83868 0.89959 1.42644 1.86169 1.05856 1.02141 1.19712 1.39832 0.87009 0.90898 0.90192 1.25628 1.03927 1.01225 0.96583 1.69825 1.59149 1.31631 1.01779 0.85189 0.78290 0.79703 0.76456 1.20293 1.22513 1.20212 1.23345 0.98876 0.97759 0.97875 0.87029 0.86911 0.87238 0.89557 0.90414 0.91640 0.88092 0.85886 0.84854 0.74471 0.91975 0.94042 0.92872 0.91123 0.79742 0.94134 0.90299 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.11 66.64 0.94 -1.39 16 2 C -0.14 -2.44 9.83 23.43 0.23 -2.21 16 3 C -0.11 -1.92 5.98 -18.71 -0.11 -2.04 16 4 C -0.13 -1.53 8.54 71.24 0.61 -0.92 16 5 C -0.14 -2.63 8.45 24.51 0.21 -2.42 16 6 C -0.11 -1.52 5.76 29.11 0.17 -1.35 16 7 C 0.51 11.72 7.82 87.66 0.69 12.41 16 8 O -0.59 -20.03 16.03 -3.02 -0.05 -20.08 16 9 N -0.71 -13.88 5.56 -463.06 -2.57 -16.45 16 10 C 0.14 3.42 5.51 86.38 0.48 3.90 16 11 C -0.09 -2.21 3.75 -10.27 -0.04 -2.24 16 12 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 14 C 0.14 5.32 4.48 45.52 0.20 5.53 16 15 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 16 N -0.73 -36.86 5.40 -320.45 -1.73 -38.59 16 17 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 21 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 C -0.14 -4.23 7.39 31.12 0.23 -4.00 16 26 H 0.11 1.23 6.09 -2.91 -0.02 1.21 16 27 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.11 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.09 0.73 6.63 -2.39 -0.02 0.72 16 30 H 0.08 0.77 6.26 -2.38 -0.01 0.76 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 2.16 8.05 -2.91 -0.02 2.14 16 33 H 0.12 1.27 5.78 -2.39 -0.01 1.26 16 34 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.42 5.09 8.47 -92.71 -0.79 4.30 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.28 7.85 -2.39 -0.02 1.26 16 38 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.37 20.45 7.92 -92.71 -0.73 19.72 16 41 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -73.55 357.71 2.58 -70.97 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.52 Total: 32.26 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.14 Total: -16.07 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -4.02 Total: -115.23 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.55 2.58 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316620201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.784 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds