Wall clock time and date at job start Tue Mar 31 2020 00:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47113 * 120.00106 * 2 1 4 4 C 1.50694 * 120.00028 * 354.80523 * 3 2 1 5 5 C 1.32872 * 119.99886 * 174.80983 * 3 2 1 6 6 C 1.50696 * 120.00124 * 6.11603 * 5 3 2 7 7 C 1.50703 * 109.47100 * 126.00350 * 6 5 3 8 8 O 1.21280 * 120.00216 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99962 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00123 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47352 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.84833 * 316.19631 * 11 10 9 13 13 C 1.53777 * 113.61302 * 87.50185 * 11 10 9 14 14 C 1.53785 * 87.07902 * 139.98437 * 13 11 10 15 15 H 1.08995 * 113.61580 * 89.11755 * 14 13 11 16 16 N 1.46502 * 113.61051 * 220.01654 * 14 13 11 17 17 C 1.36940 * 120.00381 * 252.49532 * 16 14 13 18 18 H 1.08002 * 119.99626 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00041 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99696 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00253 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46789 * 90.00213 * 21 19 17 23 23 H 1.48496 * 109.47028 * 210.00522 * 21 19 17 24 24 H 1.48505 * 109.47135 * 330.00448 * 21 19 17 25 25 C 1.53777 * 113.61413 * 185.00137 * 11 10 9 26 26 H 1.07998 * 119.99828 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00391 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99513 * 179.72784 * 2 1 3 29 29 H 1.09009 * 109.47326 * 90.00266 * 4 3 2 30 30 H 1.08995 * 109.47531 * 210.00040 * 4 3 2 31 31 H 1.09004 * 109.47750 * 330.00332 * 4 3 2 32 32 H 1.08003 * 119.99690 * 186.11355 * 5 3 2 33 33 H 1.09000 * 109.47370 * 246.00279 * 6 5 3 34 34 H 1.09003 * 109.46999 * 6.00919 * 6 5 3 35 35 H 0.97000 * 120.00207 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46640 * 300.00208 * 10 9 7 37 37 H 1.09001 * 109.46560 * 59.99895 * 10 9 7 38 38 H 1.09002 * 113.61583 * 254.52908 * 13 11 10 39 39 H 1.09002 * 113.61855 * 25.43296 * 13 11 10 40 40 H 0.97001 * 119.99671 * 72.50109 * 16 14 13 41 41 H 0.97003 * 119.99842 * 180.02562 * 20 19 17 42 42 H 1.08996 * 113.61650 * 334.56215 * 25 11 10 43 43 H 1.08998 * 113.61311 * 105.38995 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3155 2.5764 -0.1182 5 6 3.3889 1.2763 0.1041 6 6 4.1487 -0.0249 0.0833 7 6 5.2100 0.0300 -0.9851 8 8 5.3373 1.0278 -1.6627 9 7 6.0185 -1.0293 -1.1870 10 6 7.0506 -0.9757 -2.2253 11 6 7.8219 -2.2968 -2.2465 12 1 8.0745 -2.6555 -1.2486 13 6 7.1829 -3.3688 -3.1451 14 6 8.6097 -3.7406 -3.5820 15 1 9.0773 -4.4953 -2.9498 16 7 8.7260 -4.0421 -5.0109 17 6 8.9103 -5.3342 -5.4254 18 1 8.9703 -6.1309 -4.6987 19 6 9.0209 -5.6197 -6.7793 20 7 9.1975 -6.8617 -7.1776 21 14 8.9178 -4.2415 -8.0361 22 1 10.2777 -3.7026 -8.2923 23 1 8.3471 -4.7677 -9.3020 24 1 8.0467 -3.1586 -7.5128 25 6 9.0109 -2.3004 -3.2216 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8687 -0.9354 0.0044 29 1 1.0544 2.9370 0.8769 30 1 1.9443 3.3131 -0.6181 31 1 0.4060 2.4214 -0.6986 32 1 3.9211 2.2109 0.2035 33 1 4.6180 -0.1872 1.0536 34 1 3.4612 -0.8437 -0.1293 35 1 5.9169 -1.8272 -0.6449 36 1 6.5816 -0.8136 -3.1958 37 1 7.7378 -0.1567 -2.0125 38 1 6.6765 -4.1585 -2.5901 39 1 6.5731 -2.9574 -3.9495 40 1 8.6725 -3.3264 -5.6635 41 1 9.2752 -7.0612 -8.1237 42 1 8.9009 -1.5971 -4.0470 43 1 9.9802 -2.2263 -2.7286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316620202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:59 Heat of formation + Delta-G solvation = -0.572810 kcal Electronic energy + Delta-G solvation = -20534.751957 eV Core-core repulsion = 17387.515960 eV Total energy + Delta-G solvation = -3147.235997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93771 -39.88429 -37.82886 -36.09992 -34.99902 -33.04686 -32.66000 -30.96287 -28.85586 -26.47829 -26.37445 -25.27815 -22.81819 -22.35848 -21.61928 -20.70665 -19.35830 -18.54167 -18.01176 -17.32335 -16.86974 -16.63037 -16.27683 -15.91518 -15.68947 -15.36479 -14.83139 -14.59121 -14.39679 -14.14005 -13.97028 -13.48148 -13.29400 -13.26128 -13.19656 -13.04821 -12.92762 -12.69096 -12.45123 -12.14316 -11.90695 -11.70461 -11.62155 -11.49661 -11.34254 -11.13231 -10.91133 -10.80135 -10.04886 -9.27000 -9.11825 -8.03427 -5.35570 0.44269 1.36979 1.39163 1.46353 1.67014 2.03701 2.40790 2.47098 3.27041 3.59550 3.70439 3.73729 3.79185 3.94857 4.01115 4.09472 4.23064 4.29214 4.39118 4.45228 4.56732 4.60838 4.66290 4.74482 4.80016 4.83046 4.93329 4.95161 4.97686 5.03944 5.15155 5.22079 5.34139 5.46844 5.49406 5.59251 5.66844 5.77879 5.82260 6.04268 6.22786 6.60995 7.07524 7.30131 7.86105 8.03455 9.18122 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.002685 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.191446 B =10426.110378 C =10758.910417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.140 4.140 6 C -0.110 4.110 7 C 0.509 3.491 8 O -0.591 6.591 9 N -0.716 5.716 10 C 0.137 3.863 11 C -0.096 4.096 12 H 0.122 0.878 13 C -0.155 4.155 14 C 0.145 3.855 15 H 0.080 0.920 16 N -0.745 5.745 17 C -0.230 4.230 18 H 0.061 0.939 19 C -0.066 4.066 20 N -0.984 5.984 21 Si 0.953 3.047 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.256 1.256 25 C -0.137 4.137 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.417 0.583 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.074 0.926 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 16.803 20.567 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.113 4.113 4 C -0.175 4.175 5 C -0.158 4.158 6 C -0.148 4.148 7 C 0.297 3.703 8 O -0.471 6.471 9 N -0.368 5.368 10 C 0.013 3.987 11 C -0.115 4.115 12 H 0.140 0.860 13 C -0.195 4.195 14 C 0.037 3.963 15 H 0.098 0.902 16 N -0.386 5.386 17 C -0.361 4.361 18 H 0.079 0.921 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.181 1.181 25 C -0.177 4.177 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.254 0.746 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.149 17.261 20.087 30.027 hybrid contribution 0.137 -0.025 -1.176 1.184 sum -14.012 17.237 18.911 29.173 Atomic orbital electron populations 1.24660 0.95559 1.03057 0.97867 1.22135 0.95925 0.96332 1.02124 1.20826 0.94193 0.95376 1.00867 1.20833 1.00244 0.93755 1.02690 1.22806 0.94139 0.97948 1.00951 1.20855 0.96347 0.98683 0.98954 1.21191 0.82202 0.82270 0.84602 1.90688 1.72203 1.33770 1.50461 1.45954 1.34670 1.18193 1.37997 1.21216 0.89350 0.97529 0.90652 1.22469 0.95877 0.93576 0.99548 0.86012 1.23738 0.98669 0.98433 0.98706 1.21946 0.95383 0.95364 0.83651 0.90227 1.42817 1.87650 1.04529 1.03604 1.19138 1.39588 0.85476 0.91939 0.92145 1.25498 1.02840 0.98386 0.99045 1.69879 1.58929 1.19454 1.15202 0.85441 0.78303 0.79544 0.78670 1.20417 1.22380 1.18051 1.23365 0.98610 0.96927 0.98781 0.87577 0.86771 0.85493 0.90356 0.92179 0.90879 0.87501 0.85119 0.86225 0.74578 0.93591 0.91727 0.91416 0.92009 0.80254 0.93410 0.90741 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.07 66.64 0.94 -1.09 16 2 C -0.15 -2.05 9.30 23.42 0.22 -1.84 16 3 C -0.11 -1.84 5.98 -18.71 -0.11 -1.95 16 4 C -0.12 -1.63 9.39 71.23 0.67 -0.96 16 5 C -0.14 -2.47 8.43 24.51 0.21 -2.26 16 6 C -0.11 -1.53 5.94 29.10 0.17 -1.35 16 7 C 0.51 11.07 7.82 87.66 0.69 11.76 16 8 O -0.59 -18.77 16.03 -3.03 -0.05 -18.82 16 9 N -0.72 -12.89 5.56 -463.06 -2.57 -15.46 16 10 C 0.14 3.05 5.51 86.38 0.48 3.52 16 11 C -0.10 -2.05 3.75 -10.27 -0.04 -2.09 16 12 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.16 -4.48 7.43 31.12 0.23 -4.25 16 14 C 0.15 5.10 4.48 45.52 0.20 5.30 16 15 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 16 N -0.75 -34.30 5.21 -320.44 -1.67 -35.96 16 17 C -0.23 -13.04 10.45 84.03 0.88 -12.16 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 20 N -0.98 -63.31 13.97 21.65 0.30 -63.01 16 21 Si 0.95 46.09 27.74 68.60 1.90 47.99 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 25 C -0.14 -3.67 7.39 31.12 0.23 -3.44 16 26 H 0.11 1.09 6.30 -2.91 -0.02 1.07 16 27 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 28 H 0.13 1.43 5.83 -2.91 -0.02 1.42 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.07 0.89 6.66 -2.39 -0.02 0.87 16 32 H 0.11 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 1.27 5.33 -2.39 -0.01 1.26 16 35 H 0.42 4.75 8.47 -92.71 -0.79 3.96 16 36 H 0.05 1.25 7.84 -2.39 -0.02 1.23 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.01 7.90 -2.39 -0.02 1.99 16 40 H 0.36 16.35 5.79 -92.71 -0.54 15.81 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.02 354.38 2.76 -72.26 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.38 Total: 27.28 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.23 Total: -14.29 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.94 Total: -114.43 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -75.02 2.76 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316620202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds