Wall clock time and date at job start Tue Mar 31 2020 00:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47295 * 2 1 4 4 C 1.53006 * 109.47196 * 119.99931 * 2 1 3 5 5 O 1.42901 * 109.47116 * 174.99794 * 4 2 1 6 6 C 1.42895 * 114.00139 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47269 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47127 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.38823 * 119.99845 * 180.02562 * 9 8 7 11 11 C 1.39801 * 119.58465 * 359.97438 * 10 9 8 12 12 C 1.38594 * 119.48854 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68561 * 0.02562 * 12 11 10 14 14 C 1.40560 * 119.14720 * 359.97438 * 13 12 11 15 15 C 1.41317 * 119.78238 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.40027 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.30747 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46878 * 120.00400 * 19 17 15 22 22 H 1.48499 * 109.47088 * 240.00069 * 19 17 15 23 23 N 1.31959 * 119.58719 * 179.73222 * 10 9 8 24 24 H 1.09003 * 109.47338 * 300.00062 * 1 2 3 25 25 H 1.09004 * 109.46942 * 60.00054 * 1 2 3 26 26 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47338 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47513 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47081 * 299.99861 * 3 2 1 30 30 H 1.08998 * 109.47565 * 60.00124 * 3 2 1 31 31 H 1.08999 * 109.46552 * 55.00206 * 4 2 1 32 32 H 1.08991 * 109.46786 * 294.99817 * 4 2 1 33 33 H 1.09001 * 109.47098 * 59.99755 * 6 5 4 34 34 H 1.09004 * 109.47055 * 300.00254 * 6 5 4 35 35 H 1.09001 * 109.46832 * 60.00112 * 7 6 5 36 36 H 1.08993 * 109.47194 * 299.99633 * 7 6 5 37 37 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 38 38 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 39 39 H 0.96998 * 120.00192 * 359.97438 * 9 8 7 40 40 H 1.07998 * 120.25204 * 359.97438 * 11 10 9 41 41 H 1.08005 * 120.65653 * 180.02562 * 12 11 10 42 42 H 1.08004 * 120.42946 * 179.97438 * 13 12 11 43 43 H 0.97000 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4642 -0.8238 1.1920 6 6 4.0450 -1.4856 2.3175 7 6 5.5649 -1.5372 2.1503 8 6 6.1868 -2.2452 3.3557 9 7 7.6422 -2.2940 3.1960 10 6 8.4278 -2.8935 4.1710 11 6 7.8209 -3.4475 5.3020 12 6 8.6072 -4.0451 6.2744 13 6 9.9789 -4.0744 6.0941 14 6 10.5294 -3.5002 4.9352 15 6 11.9286 -3.5221 4.7376 16 1 12.5710 -3.9794 5.4756 17 6 12.4819 -2.9510 3.5851 18 7 11.7041 -2.3970 2.6920 19 14 14.3312 -2.9806 3.3236 20 1 14.9827 -3.6612 4.4714 21 1 14.6424 -3.7157 2.0713 22 1 14.8388 -1.5889 3.2197 23 7 9.7375 -2.9376 4.0162 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1369 33 1 3.6519 -2.5000 2.3851 34 1 3.7982 -0.9389 3.2276 35 1 5.9576 -0.5226 2.0830 36 1 5.8120 -2.0836 1.2403 37 1 5.9396 -1.6983 4.2656 38 1 5.7941 -3.2598 3.4236 39 1 8.0569 -1.9081 2.4086 40 1 6.7478 -3.4093 5.4175 41 1 8.1581 -4.4793 7.1555 42 1 10.6183 -4.5325 6.8342 43 1 12.0874 -2.0010 1.8938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319373582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:10 Heat of formation + Delta-G solvation = -32.363860 kcal Electronic energy + Delta-G solvation = -20549.499284 eV Core-core repulsion = 17400.884724 eV Total energy + Delta-G solvation = -3148.614560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.62714 -38.19233 -35.98319 -35.00478 -33.37963 -31.67616 -30.25646 -28.60123 -27.43400 -26.37698 -25.33988 -24.37625 -21.97581 -21.12471 -20.41569 -20.24688 -17.37480 -16.80208 -16.45950 -16.17108 -15.39846 -14.94902 -14.76907 -14.61204 -14.19528 -14.09593 -13.40252 -13.21730 -12.92463 -12.80791 -12.72095 -12.44798 -12.04677 -12.00348 -11.53714 -11.36769 -11.27122 -11.18478 -11.14795 -10.94586 -10.86437 -10.81131 -10.57510 -10.39522 -9.87210 -9.71722 -9.46738 -8.85956 -7.88249 -7.48068 -6.48692 -6.29819 -4.44550 2.89057 3.13584 3.18079 3.26529 3.32273 3.38633 4.00863 4.29881 4.56168 4.62575 4.85047 4.86746 4.96335 5.12935 5.18976 5.20174 5.27982 5.32593 5.43042 5.52458 5.56772 5.60151 5.66196 5.77654 5.83213 5.99000 6.06363 6.08655 6.17943 6.23905 6.28698 6.60226 6.88795 6.92152 6.97086 7.08675 7.28193 7.62651 7.84251 7.94576 8.20337 8.39593 8.71871 8.83456 9.15132 10.27683 10.43495 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.002679 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.642071 B =10448.896019 C =11393.246255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.387 6.387 6 C 0.068 3.932 7 C -0.128 4.128 8 C 0.146 3.854 9 N -0.739 5.739 10 C 0.411 3.589 11 C -0.367 4.367 12 C -0.032 4.032 13 C -0.317 4.317 14 C 0.292 3.708 15 C -0.434 4.434 16 H 0.083 0.917 17 C 0.070 3.930 18 N -0.716 5.716 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.532 5.532 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.251 4.659 -4.933 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.306 6.306 6 C -0.009 4.009 7 C -0.166 4.166 8 C 0.020 3.980 9 N -0.376 5.376 10 C 0.171 3.829 11 C -0.393 4.393 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.164 3.836 15 C -0.466 4.466 16 H 0.102 0.898 17 C -0.154 4.154 18 N -0.337 5.337 19 Si 0.729 3.271 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.253 5.253 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.932 5.156 -5.918 18.663 hybrid contribution 0.317 -0.364 0.606 0.775 sum -16.615 4.792 -5.312 18.090 Atomic orbital electron populations 1.21790 0.94428 1.01943 1.02187 1.21104 0.95353 0.97030 0.98005 1.21788 1.02133 0.95003 1.01290 1.22557 0.81484 0.99062 0.97962 1.87860 1.19718 1.79189 1.43837 1.22358 0.93750 0.96209 0.88553 1.21652 0.93046 1.02416 0.99515 1.20858 0.81656 0.99112 0.96351 1.44079 1.03416 1.65967 1.24146 1.18519 0.89725 0.88545 0.86094 1.20602 0.97835 1.20341 1.00569 1.20593 0.93803 0.95313 0.95969 1.21534 0.94324 1.15417 1.02698 1.18217 0.92909 0.86337 0.86088 1.19616 0.90927 1.31974 1.04131 0.89845 1.26061 0.99803 0.93984 0.95601 1.70165 1.35765 1.21997 1.05819 0.86322 0.82880 0.78682 0.79188 1.18457 1.19961 1.19959 1.68211 1.00180 1.25664 1.31254 0.92523 0.92053 0.92538 0.90369 0.91688 0.92875 0.92953 0.93486 0.93433 0.93152 0.93158 0.90583 0.90578 0.93056 0.93056 0.76906 0.89249 0.88955 0.88707 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.08 16 3 C -0.14 -1.20 9.09 37.16 0.34 -0.86 16 4 C 0.07 0.61 5.32 37.16 0.20 0.81 16 5 O -0.39 -4.61 9.88 -35.23 -0.35 -4.96 16 6 C 0.07 0.77 5.94 37.16 0.22 0.99 16 7 C -0.13 -1.67 5.70 -26.73 -0.15 -1.82 16 8 C 0.15 2.30 4.88 -4.04 -0.02 2.28 16 9 N -0.74 -15.17 5.72 -60.39 -0.35 -15.52 16 10 C 0.41 10.28 7.65 -155.32 -1.19 9.10 16 11 C -0.37 -8.65 9.34 -38.87 -0.36 -9.01 16 12 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 13 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 14 C 0.29 8.29 6.55 -85.00 -0.56 7.73 16 15 C -0.43 -11.97 9.14 -37.74 -0.34 -12.31 16 16 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 17 C 0.07 1.83 5.50 -17.34 -0.10 1.74 16 18 N -0.72 -19.34 11.46 55.55 0.64 -18.70 16 19 Si 0.90 18.99 29.56 -169.99 -5.02 13.96 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 N -0.53 -15.01 7.89 -10.32 -0.08 -15.09 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 38 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 39 H 0.40 8.12 8.59 -40.82 -0.35 7.77 16 40 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 41 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -30.47 356.15 -9.88 -40.35 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.40 Total: 7.33 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.69 Total: -12.74 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.21 Total: -49.31 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.35 Total: -4.96 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.47 -9.88 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319373582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.986 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds