Wall clock time and date at job start Tue Mar 31 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 H 1.08996 * 109.47377 * 56.13917 * 3 2 1 5 5 C 1.52996 * 109.47196 * 176.14391 * 3 2 1 6 6 C 1.53002 * 109.47352 * 184.99690 * 5 3 2 7 7 H 1.08996 * 109.46892 * 305.00001 * 6 5 3 8 8 C 1.53004 * 109.46640 * 64.99991 * 6 5 3 9 9 C 1.53001 * 109.47306 * 184.99743 * 6 5 3 10 10 O 1.42894 * 109.47031 * 175.00232 * 9 6 5 11 11 N 1.46509 * 109.46823 * 296.14156 * 3 2 1 12 12 C 1.38824 * 119.99772 * 102.47252 * 11 3 2 13 13 C 1.39799 * 119.58570 * 354.38487 * 12 11 3 14 14 C 1.38586 * 119.48814 * 180.02562 * 13 12 11 15 15 C 1.38389 * 118.68651 * 0.25618 * 14 13 12 16 16 C 1.40558 * 119.14481 * 359.48282 * 15 14 13 17 17 C 1.41317 * 119.78284 * 180.25100 * 16 15 14 18 18 H 1.07991 * 120.00197 * 8.97474 * 17 16 15 19 19 C 1.40026 * 119.99699 * 188.96951 * 17 16 15 20 20 N 1.30741 * 120.00126 * 8.66661 * 19 17 16 21 21 Si 1.86798 * 119.99771 * 188.66120 * 19 17 16 22 22 H 1.48503 * 109.47326 * 84.98832 * 21 19 17 23 23 H 1.48502 * 109.47199 * 204.98805 * 21 19 17 24 24 H 1.48495 * 109.47422 * 324.98641 * 21 19 17 25 25 N 1.31951 * 119.58297 * 174.36924 * 12 11 3 26 26 H 1.08994 * 109.47433 * 65.19235 * 1 2 3 27 27 H 1.09005 * 109.46902 * 185.19285 * 1 2 3 28 28 H 1.09000 * 109.47168 * 305.18989 * 1 2 3 29 29 H 1.09000 * 109.47509 * 240.00112 * 2 1 3 30 30 H 1.08999 * 109.47369 * 119.99726 * 2 1 3 31 31 H 1.09002 * 109.47569 * 304.99890 * 5 3 2 32 32 H 1.09007 * 109.47186 * 64.99748 * 5 3 2 33 33 H 1.08996 * 109.47471 * 60.00364 * 8 6 5 34 34 H 1.09008 * 109.46313 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.47051 * 299.99535 * 8 6 5 36 36 H 1.08998 * 109.47325 * 295.00274 * 9 6 5 37 37 H 1.09006 * 109.47044 * 55.00035 * 9 6 5 38 38 H 0.96702 * 113.99986 * 180.02562 * 10 9 6 39 39 H 0.97003 * 119.99892 * 282.46494 * 11 3 2 40 40 H 1.07997 * 120.25206 * 0.03006 * 13 12 11 41 41 H 1.08001 * 120.65830 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.42956 * 179.74900 * 15 14 13 43 43 H 0.97004 * 120.00171 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6212 1.9760 0.8533 5 6 3.5668 1.4437 0.0970 6 6 4.0688 2.8836 0.2225 7 1 3.6856 3.4756 -0.6086 8 6 3.5788 3.4812 1.5430 9 6 5.5985 2.8947 0.1941 10 8 6.0651 4.2454 0.1940 11 7 1.6288 2.1058 -1.2400 12 6 0.5581 2.9893 -1.2326 13 6 -0.1954 3.1508 -0.0661 14 6 -1.2642 4.0330 -0.0611 15 6 -1.5577 4.7276 -1.2215 16 6 -0.7592 4.5259 -2.3606 17 6 -1.0435 5.2322 -3.5511 18 1 -1.7747 6.0270 -3.5460 19 6 -0.3770 4.9017 -4.7374 20 7 0.3791 3.8362 -4.7873 21 14 -0.5684 5.9829 -6.2486 22 1 0.4038 7.1035 -6.1818 23 1 -0.3119 5.1772 -7.4694 24 1 -1.9490 6.5275 -6.2960 25 7 0.2645 3.6663 -2.3265 26 1 -0.3634 0.4311 -0.9328 27 1 -0.3633 -1.0235 0.0930 28 1 -0.3633 0.5922 0.8399 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8757 0.8736 0.9732 32 1 3.9882 0.9889 -0.7995 33 1 3.9619 2.8891 2.3741 34 1 3.9361 4.5072 1.6322 35 1 2.4890 3.4733 1.5632 36 1 5.9820 2.3780 1.0739 37 1 5.9489 2.3892 -0.7058 38 1 7.0283 4.3288 0.1763 39 1 2.1050 1.9276 -2.0662 40 1 0.0536 2.5925 0.8241 41 1 -1.8593 4.1721 0.8294 42 1 -2.3867 5.4191 -1.2502 43 1 0.8411 3.6074 -5.6090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320655726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:36 Heat of formation + Delta-G solvation = -33.756357 kcal Electronic energy + Delta-G solvation = -22357.829723 eV Core-core repulsion = 19209.154780 eV Total energy + Delta-G solvation = -3148.674944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.85864 -37.62834 -36.40123 -33.83614 -33.21244 -31.87567 -30.16993 -29.04282 -27.37520 -26.36046 -25.28684 -23.41711 -21.71066 -21.03623 -20.02493 -19.48511 -17.35357 -17.29731 -16.29368 -15.37208 -15.31309 -14.74710 -14.63849 -14.13495 -13.79792 -13.61572 -13.45547 -13.01554 -12.76326 -12.59446 -12.17554 -12.08387 -11.88776 -11.64066 -11.34277 -11.20766 -10.99900 -10.95821 -10.76627 -10.63868 -10.53841 -10.51585 -10.29111 -10.02451 -9.93018 -9.79949 -9.36682 -8.78778 -7.86730 -7.41444 -6.47443 -6.28938 -4.39087 2.93058 3.14326 3.17310 3.30874 3.35988 4.02931 4.20518 4.27149 4.87555 4.99832 5.00279 5.16115 5.31639 5.41964 5.50573 5.55705 5.61493 5.81240 5.87228 5.89966 6.01034 6.09591 6.16065 6.19721 6.24325 6.26749 6.34143 6.44431 6.58621 6.61561 6.72817 6.80776 6.92366 6.97152 7.04311 7.30511 7.63961 7.67768 7.88705 8.00228 8.24046 8.45284 8.76998 8.87295 9.19455 10.30000 10.46144 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.005563 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.220854 B = 5032.243939 C = 5887.041150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.158 3.842 4 H 0.090 0.910 5 C -0.120 4.120 6 C -0.091 4.091 7 H 0.088 0.912 8 C -0.142 4.142 9 C 0.082 3.918 10 O -0.570 6.570 11 N -0.728 5.728 12 C 0.418 3.582 13 C -0.364 4.364 14 C -0.033 4.033 15 C -0.320 4.320 16 C 0.298 3.702 17 C -0.440 4.440 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.721 5.721 21 Si 0.903 3.097 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 N -0.537 5.537 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.373 0.627 39 H 0.392 0.608 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.656 -6.002 7.822 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.051 3.949 4 H 0.108 0.892 5 C -0.159 4.159 6 C -0.109 4.109 7 H 0.106 0.894 8 C -0.199 4.199 9 C 0.004 3.996 10 O -0.375 6.375 11 N -0.364 5.364 12 C 0.178 3.822 13 C -0.390 4.390 14 C -0.057 4.057 15 C -0.343 4.343 16 C 0.171 3.829 17 C -0.472 4.472 18 H 0.100 0.900 19 C -0.148 4.148 20 N -0.342 5.342 21 Si 0.727 3.273 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 N -0.258 5.258 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.219 0.781 39 H 0.227 0.773 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.593 -6.157 7.132 12.752 hybrid contribution 0.234 0.288 -0.246 0.445 sum 8.826 -5.869 6.886 12.640 Atomic orbital electron populations 1.21725 0.95242 1.00086 1.03173 1.21998 0.97010 0.97250 1.01090 1.20860 0.92299 0.92318 0.89402 0.89219 1.21904 0.96341 0.95814 1.01825 1.21077 0.92537 0.96981 1.00339 0.89351 1.21780 1.01594 1.00836 0.95678 1.22274 0.95530 0.82872 0.98935 1.86551 1.26225 1.27037 1.97639 1.44160 1.34942 1.48063 1.09209 1.18446 0.85901 0.87754 0.90076 1.20648 1.06221 1.13530 0.98558 1.20592 0.94865 0.94223 0.96034 1.21515 1.06318 1.10426 0.96002 1.18144 0.85843 0.87446 0.91461 1.19525 1.19888 1.15826 0.91994 0.90027 1.25982 0.93936 0.94715 1.00167 1.70058 1.18260 1.19583 1.26339 0.86434 0.79801 0.80661 0.80384 1.19410 1.20398 1.18723 1.68100 1.20946 1.12950 1.23809 0.91765 0.94069 0.92697 0.92309 0.92312 0.91354 0.91798 0.93611 0.92412 0.91983 0.94204 0.94026 0.78099 0.77315 0.88967 0.89193 0.88923 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.62 37.16 0.32 -1.91 16 2 C -0.13 -1.82 5.62 -26.73 -0.15 -1.97 16 3 C 0.16 2.38 1.99 -67.93 -0.14 2.24 16 4 H 0.09 1.44 3.94 -51.93 -0.20 1.24 16 5 C -0.12 -1.50 4.33 -26.73 -0.12 -1.62 16 6 C -0.09 -1.29 2.57 -90.62 -0.23 -1.52 16 7 H 0.09 1.60 7.62 -51.93 -0.40 1.21 16 8 C -0.14 -2.01 8.85 37.16 0.33 -1.68 16 9 C 0.08 0.97 6.43 37.16 0.24 1.21 16 10 O -0.57 -7.39 13.19 -35.23 -0.46 -7.85 16 11 N -0.73 -14.02 4.11 -53.90 -0.22 -14.24 16 12 C 0.42 9.92 6.90 -155.32 -1.07 8.85 16 13 C -0.36 -8.18 8.16 -38.87 -0.32 -8.50 16 14 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 15 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 16 C 0.30 8.38 6.51 -85.00 -0.55 7.83 16 17 C -0.44 -12.15 9.13 -37.74 -0.34 -12.49 16 18 H 0.08 2.13 7.86 -52.49 -0.41 1.71 16 19 C 0.08 2.01 5.46 -17.35 -0.09 1.91 16 20 N -0.72 -19.39 11.61 55.55 0.64 -18.75 16 21 Si 0.90 19.15 29.57 -169.99 -5.03 14.12 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 N -0.54 -14.77 8.05 -10.33 -0.08 -14.85 16 26 H 0.06 1.21 7.27 -51.93 -0.38 0.83 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.85 6.86 -51.93 -0.36 0.50 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.88 7.82 -51.92 -0.41 0.47 16 35 H 0.06 0.96 6.46 -51.93 -0.34 0.63 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.37 2.91 9.12 45.56 0.42 3.33 16 39 H 0.39 7.76 8.90 -40.82 -0.36 7.40 16 40 H 0.09 1.85 4.77 -52.49 -0.25 1.60 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.63 8.29 -40.82 -0.34 6.30 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -30.65 342.57 -8.94 -39.59 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.05 Total: 14.20 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.91 Total: -17.39 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.34 Total: -47.84 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.46 Total: -7.85 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.65 -8.94 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320655726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.837 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds