Wall clock time and date at job start Tue Mar 31 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 H 1.08996 * 109.47377 * 56.13917 * 3 2 1 5 5 C 1.52996 * 109.47196 * 176.14391 * 3 2 1 6 6 C 1.53002 * 109.47352 * 184.99690 * 5 3 2 7 7 H 1.08996 * 109.46892 * 305.00001 * 6 5 3 8 8 C 1.53004 * 109.46640 * 64.99991 * 6 5 3 9 9 C 1.53001 * 109.47306 * 184.99743 * 6 5 3 10 10 O 1.42894 * 109.47031 * 175.00232 * 9 6 5 11 11 N 1.46509 * 109.46823 * 296.14156 * 3 2 1 12 12 C 1.38824 * 119.99772 * 102.47252 * 11 3 2 13 13 C 1.39799 * 119.58570 * 354.38487 * 12 11 3 14 14 C 1.38586 * 119.48814 * 180.02562 * 13 12 11 15 15 C 1.38389 * 118.68651 * 0.25618 * 14 13 12 16 16 C 1.40558 * 119.14481 * 359.48282 * 15 14 13 17 17 C 1.41317 * 119.78284 * 180.25100 * 16 15 14 18 18 H 1.07991 * 120.00197 * 8.97474 * 17 16 15 19 19 C 1.40026 * 119.99699 * 188.96951 * 17 16 15 20 20 N 1.30741 * 120.00126 * 8.66661 * 19 17 16 21 21 Si 1.86798 * 119.99771 * 188.66120 * 19 17 16 22 22 H 1.48503 * 109.47326 * 84.98832 * 21 19 17 23 23 H 1.48502 * 109.47199 * 204.98805 * 21 19 17 24 24 H 1.48495 * 109.47422 * 324.98641 * 21 19 17 25 25 N 1.31951 * 119.58297 * 174.36924 * 12 11 3 26 26 H 1.08994 * 109.47433 * 65.19235 * 1 2 3 27 27 H 1.09005 * 109.46902 * 185.19285 * 1 2 3 28 28 H 1.09000 * 109.47168 * 305.18989 * 1 2 3 29 29 H 1.09000 * 109.47509 * 240.00112 * 2 1 3 30 30 H 1.08999 * 109.47369 * 119.99726 * 2 1 3 31 31 H 1.09002 * 109.47569 * 304.99890 * 5 3 2 32 32 H 1.09007 * 109.47186 * 64.99748 * 5 3 2 33 33 H 1.08996 * 109.47471 * 60.00364 * 8 6 5 34 34 H 1.09008 * 109.46313 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.47051 * 299.99535 * 8 6 5 36 36 H 1.08998 * 109.47325 * 295.00274 * 9 6 5 37 37 H 1.09006 * 109.47044 * 55.00035 * 9 6 5 38 38 H 0.96702 * 113.99986 * 180.02562 * 10 9 6 39 39 H 0.97003 * 119.99892 * 282.46494 * 11 3 2 40 40 H 1.07997 * 120.25206 * 0.03006 * 13 12 11 41 41 H 1.08001 * 120.65830 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.42956 * 179.74900 * 15 14 13 43 43 H 0.97004 * 120.00171 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6212 1.9760 0.8533 5 6 3.5668 1.4437 0.0970 6 6 4.0688 2.8836 0.2225 7 1 3.6856 3.4756 -0.6086 8 6 3.5788 3.4812 1.5430 9 6 5.5985 2.8947 0.1941 10 8 6.0651 4.2454 0.1940 11 7 1.6288 2.1058 -1.2400 12 6 0.5581 2.9893 -1.2326 13 6 -0.1954 3.1508 -0.0661 14 6 -1.2642 4.0330 -0.0611 15 6 -1.5577 4.7276 -1.2215 16 6 -0.7592 4.5259 -2.3606 17 6 -1.0435 5.2322 -3.5511 18 1 -1.7747 6.0270 -3.5460 19 6 -0.3770 4.9017 -4.7374 20 7 0.3791 3.8362 -4.7873 21 14 -0.5684 5.9829 -6.2486 22 1 0.4038 7.1035 -6.1818 23 1 -0.3119 5.1772 -7.4694 24 1 -1.9490 6.5275 -6.2960 25 7 0.2645 3.6663 -2.3265 26 1 -0.3634 0.4311 -0.9328 27 1 -0.3633 -1.0235 0.0930 28 1 -0.3633 0.5922 0.8399 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8757 0.8736 0.9732 32 1 3.9882 0.9889 -0.7995 33 1 3.9619 2.8891 2.3741 34 1 3.9361 4.5072 1.6322 35 1 2.4890 3.4733 1.5632 36 1 5.9820 2.3780 1.0739 37 1 5.9489 2.3892 -0.7058 38 1 7.0283 4.3288 0.1763 39 1 2.1050 1.9276 -2.0662 40 1 0.0536 2.5925 0.8241 41 1 -1.8593 4.1721 0.8294 42 1 -2.3867 5.4191 -1.2502 43 1 0.8411 3.6074 -5.6090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320655726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:36 Heat of formation + Delta-G solvation = -53.922132 kcal Electronic energy + Delta-G solvation = -22358.704177 eV Core-core repulsion = 19209.154780 eV Total energy + Delta-G solvation = -3149.549397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43557 -39.00605 -37.63023 -35.49071 -34.64895 -33.41655 -32.06957 -30.62459 -28.81584 -27.41471 -27.19206 -24.55229 -23.50121 -22.75948 -21.32915 -20.77011 -19.19151 -18.37785 -17.94052 -16.85633 -16.59407 -16.35616 -16.09954 -15.59440 -15.38021 -14.92218 -14.78289 -14.50198 -14.15890 -13.93423 -13.78571 -13.61505 -13.14949 -12.95908 -12.88254 -12.73032 -12.61223 -12.45767 -12.30704 -12.09605 -11.81025 -11.75693 -11.71012 -11.52947 -11.18436 -11.15999 -10.84762 -10.53850 -9.80835 -9.37063 -8.34140 -8.12185 -6.42905 1.09900 1.39637 1.40019 1.52509 1.59150 2.24880 2.75883 2.94033 3.29886 3.92616 3.97776 4.03272 4.14690 4.24628 4.32841 4.40080 4.46418 4.53164 4.61978 4.70156 4.73463 4.80167 4.88344 4.92314 5.02245 5.03656 5.04202 5.10512 5.13092 5.16418 5.21999 5.34514 5.40908 5.47993 5.50002 5.53706 5.77566 6.01724 6.14375 6.26251 6.64613 6.88495 6.95249 7.02070 7.29559 8.38463 8.53799 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.005563 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.220854 B = 5032.243939 C = 5887.041150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.153 3.847 4 H 0.082 0.918 5 C -0.110 4.110 6 C -0.092 4.092 7 H 0.037 0.963 8 C -0.136 4.136 9 C 0.083 3.917 10 O -0.598 6.598 11 N -0.721 5.721 12 C 0.409 3.591 13 C -0.356 4.356 14 C -0.033 4.033 15 C -0.351 4.351 16 C 0.266 3.734 17 C -0.480 4.480 18 H 0.082 0.918 19 C 0.032 3.968 20 N -0.756 5.756 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.267 1.267 24 H -0.256 1.256 25 N -0.572 5.572 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.387 0.613 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -7.542 9.145 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.048 3.952 4 H 0.100 0.900 5 C -0.148 4.148 6 C -0.111 4.111 7 H 0.056 0.944 8 C -0.194 4.194 9 C 0.006 3.994 10 O -0.407 6.407 11 N -0.354 5.354 12 C 0.167 3.833 13 C -0.381 4.381 14 C -0.058 4.058 15 C -0.374 4.374 16 C 0.138 3.862 17 C -0.513 4.513 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.379 5.379 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.191 1.191 24 H -0.180 1.180 25 N -0.295 5.295 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.244 0.756 39 H 0.221 0.779 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.106 -7.732 8.498 15.301 hybrid contribution -0.167 0.680 -0.498 0.859 sum 9.939 -7.051 8.000 14.578 Atomic orbital electron populations 1.21679 0.96784 1.00896 1.00598 1.21960 0.95466 0.96133 1.03023 1.21168 0.94342 0.92788 0.86937 0.90021 1.21846 0.93918 0.95115 1.03908 1.21043 0.94530 0.97266 0.98260 0.94435 1.21725 1.00318 1.00425 0.96892 1.22276 0.93643 0.82769 1.00723 1.86499 1.28471 1.27922 1.97759 1.44350 1.33377 1.47017 1.10683 1.18847 0.86915 0.87739 0.89758 1.20961 1.05278 1.12823 0.99046 1.20998 0.95096 0.93249 0.96410 1.21643 1.07031 1.12074 0.96682 1.18591 0.86728 0.88197 0.92649 1.19852 1.21362 1.16810 0.93233 0.89994 1.26867 0.93124 0.95962 1.03001 1.70150 1.19068 1.21104 1.27530 0.85235 0.79883 0.78440 0.76143 1.19170 1.19113 1.18003 1.68066 1.21573 1.14065 1.25803 0.96079 0.92027 0.93002 0.92041 0.88531 0.87612 0.90997 0.90543 0.94263 0.93885 0.91217 0.93181 0.75650 0.77923 0.86158 0.85777 0.88565 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.62 71.98 0.62 -3.51 16 2 C -0.13 -3.05 5.62 30.59 0.17 -2.88 16 3 C 0.15 4.31 1.99 44.99 0.09 4.39 16 4 H 0.08 2.46 3.94 -2.39 -0.01 2.45 16 5 C -0.11 -2.41 4.33 30.59 0.13 -2.28 16 6 C -0.09 -2.49 2.57 -10.79 -0.03 -2.52 16 7 H 0.04 1.39 7.62 -2.39 -0.02 1.37 16 8 C -0.14 -3.67 8.85 71.98 0.64 -3.03 16 9 C 0.08 1.78 6.43 71.98 0.46 2.24 16 10 O -0.60 -14.75 13.19 -148.98 -1.97 -16.72 16 11 N -0.72 -28.05 4.11 -324.44 -1.33 -29.39 16 12 C 0.41 19.92 6.90 133.42 0.92 20.84 16 13 C -0.36 -16.01 8.16 22.73 0.19 -15.83 16 14 C -0.03 -1.55 10.15 22.39 0.23 -1.33 16 15 C -0.35 -18.73 9.83 22.87 0.22 -18.51 16 16 C 0.27 15.70 6.51 40.18 0.26 15.96 16 17 C -0.48 -27.83 9.13 23.46 0.21 -27.61 16 18 H 0.08 4.50 7.86 -2.92 -0.02 4.48 16 19 C 0.03 1.72 5.46 85.29 0.47 2.19 16 20 N -0.76 -42.27 11.61 21.84 0.25 -42.02 16 21 Si 0.98 40.34 29.57 68.60 2.03 42.37 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 N -0.57 -32.98 8.05 -186.58 -1.50 -34.48 16 26 H 0.02 0.77 7.27 -2.39 -0.02 0.75 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.51 6.86 -2.39 -0.02 1.49 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.17 7.82 -2.38 -0.02 1.16 16 35 H 0.04 1.29 6.46 -2.39 -0.02 1.28 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.39 5.47 9.12 -74.06 -0.68 4.80 16 39 H 0.39 15.75 8.90 -92.71 -0.83 14.93 16 40 H 0.12 4.65 4.77 -2.91 -0.01 4.64 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.28 13.99 8.29 -92.70 -0.77 13.22 16 Total: -1.00 -71.25 342.57 1.58 -69.67 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -0.48 Total: 42.43 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 4.59 Total: -31.87 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -2.58 Total: -105.88 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.97 Total: -16.72 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -71.25 1.58 -69.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320655726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.746 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds