Wall clock time and date at job start Tue Mar 31 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.09007 * 109.47290 * 305.36743 * 3 2 1 5 5 C 1.53004 * 109.47215 * 185.36968 * 3 2 1 6 6 C 1.53002 * 109.47052 * 174.99652 * 5 3 2 7 7 H 1.08998 * 109.47026 * 55.00254 * 6 5 3 8 8 C 1.52995 * 109.47502 * 295.00054 * 6 5 3 9 9 C 1.53006 * 109.46832 * 175.00272 * 6 5 3 10 10 O 1.42903 * 109.46765 * 185.00320 * 9 6 5 11 11 N 1.46504 * 109.47191 * 65.37019 * 3 2 1 12 12 C 1.38821 * 119.99730 * 263.30355 * 11 3 2 13 13 C 1.39797 * 119.58707 * 354.58743 * 12 11 3 14 14 C 1.38593 * 119.48817 * 180.02562 * 13 12 11 15 15 C 1.38383 * 118.68389 * 359.97324 * 14 13 12 16 16 C 1.40552 * 119.15160 * 0.02562 * 15 14 13 17 17 C 1.41317 * 119.79078 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99466 * 0.02562 * 17 16 15 19 19 C 1.40023 * 120.00497 * 180.02562 * 17 16 15 20 20 N 1.30750 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00349 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47332 * 89.99199 * 21 19 17 23 23 H 1.48497 * 109.47104 * 209.99801 * 21 19 17 24 24 H 1.48509 * 109.46572 * 329.99709 * 21 19 17 25 25 N 1.31958 * 119.58068 * 174.57947 * 12 11 3 26 26 H 1.08999 * 109.47204 * 54.69764 * 1 2 3 27 27 H 1.08996 * 109.46847 * 174.69837 * 1 2 3 28 28 H 1.09001 * 109.46704 * 294.69486 * 1 2 3 29 29 H 1.08997 * 109.47121 * 240.00250 * 2 1 3 30 30 H 1.09002 * 109.47311 * 119.99981 * 2 1 3 31 31 H 1.08994 * 109.47193 * 294.99902 * 5 3 2 32 32 H 1.09006 * 109.46814 * 55.00108 * 5 3 2 33 33 H 1.08998 * 109.47144 * 300.00128 * 8 6 5 34 34 H 1.08999 * 109.46813 * 60.00116 * 8 6 5 35 35 H 1.08999 * 109.47230 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.46979 * 304.99842 * 9 6 5 37 37 H 1.08994 * 109.46934 * 65.00044 * 9 6 5 38 38 H 0.96703 * 113.99391 * 179.97438 * 10 9 6 39 39 H 0.97002 * 119.99618 * 83.31162 * 11 3 2 40 40 H 1.07996 * 120.25605 * 0.02562 * 13 12 11 41 41 H 1.08002 * 120.65867 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.42918 * 180.02562 * 15 14 13 43 43 H 0.96999 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9834 -0.8381 5 6 3.5641 1.4446 -0.1350 6 6 4.0629 2.8856 -0.2604 7 1 3.7007 3.4704 0.5851 8 6 3.5404 3.4947 -1.5630 9 6 5.5929 2.8966 -0.2701 10 8 6.0595 4.2473 -0.2697 11 7 1.6601 2.0948 1.2556 12 6 0.5191 2.8837 1.3103 13 6 -0.1978 3.1428 0.1384 14 6 -1.3362 3.9311 0.1953 15 6 -1.7309 4.4406 1.4200 16 6 -0.9680 4.1444 2.5627 17 6 -1.3583 4.6580 3.8200 18 1 -2.2406 5.2756 3.9006 19 6 -0.6013 4.3662 4.9612 20 7 0.4666 3.6181 4.8637 21 14 -1.1177 5.0446 6.6233 22 1 -2.0329 4.0824 7.2880 23 1 0.0851 5.2493 7.4698 24 1 -1.8159 6.3414 6.4333 25 7 0.1249 3.3796 2.4679 26 1 -0.3633 0.5939 -0.8387 27 1 -0.3633 -1.0232 -0.0950 28 1 -0.3633 0.4294 0.9337 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0076 0.9820 0.7466 32 1 3.8509 0.8822 -1.0236 33 1 3.9026 2.9100 -2.4085 34 1 2.4504 3.4869 -1.5561 35 1 3.8961 4.5211 -1.6525 36 1 5.9655 2.3832 0.6164 37 1 5.9542 2.3875 -1.1636 38 1 7.0229 4.3305 -0.2752 39 1 2.2058 1.9755 2.0486 40 1 0.1329 2.7318 -0.8039 41 1 -1.9042 4.1437 -0.6984 42 1 -2.6138 5.0579 1.4968 43 1 0.9912 3.4163 5.6542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320655727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:40 Heat of formation + Delta-G solvation = -31.987199 kcal Electronic energy + Delta-G solvation = -22331.141460 eV Core-core repulsion = 19182.543233 eV Total energy + Delta-G solvation = -3148.598227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.86099 -37.64097 -36.40005 -33.84832 -33.20521 -31.84654 -30.15796 -29.05479 -27.37016 -26.37926 -25.28300 -23.41353 -21.69758 -21.02881 -20.04100 -19.47367 -17.36612 -17.29017 -16.30066 -15.37796 -15.36517 -14.73610 -14.57988 -14.15407 -13.83281 -13.63443 -13.37487 -13.01010 -12.76133 -12.61126 -12.21038 -12.08520 -11.87699 -11.64464 -11.32565 -11.18111 -11.01213 -10.93589 -10.78053 -10.62927 -10.54739 -10.47730 -10.30425 -10.02474 -9.95006 -9.79300 -9.41716 -8.78945 -7.84390 -7.43001 -6.40284 -6.26318 -4.40696 2.92730 3.14249 3.17656 3.31695 3.35824 4.02727 4.18562 4.28065 4.89248 4.98201 4.98362 5.15403 5.30743 5.41938 5.49697 5.56285 5.61488 5.79942 5.86324 5.89245 6.00862 6.10873 6.14519 6.19686 6.25552 6.28116 6.34599 6.47660 6.56405 6.58681 6.75040 6.82471 6.92753 6.97320 7.04229 7.31442 7.61791 7.68074 7.89088 8.00817 8.23505 8.45837 8.77540 8.87388 9.20520 10.31789 10.47334 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.005287 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.745118 B = 5294.267117 C = 6026.768032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.158 3.842 4 H 0.089 0.911 5 C -0.119 4.119 6 C -0.091 4.091 7 H 0.088 0.912 8 C -0.142 4.142 9 C 0.081 3.919 10 O -0.570 6.570 11 N -0.728 5.728 12 C 0.418 3.582 13 C -0.364 4.364 14 C -0.033 4.033 15 C -0.320 4.320 16 C 0.294 3.706 17 C -0.436 4.436 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.716 5.716 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.262 1.262 25 N -0.532 5.532 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.373 0.627 39 H 0.393 0.607 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.795 -5.387 -8.181 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.051 3.949 4 H 0.106 0.894 5 C -0.158 4.158 6 C -0.109 4.109 7 H 0.106 0.894 8 C -0.199 4.199 9 C 0.003 3.997 10 O -0.375 6.375 11 N -0.364 5.364 12 C 0.178 3.822 13 C -0.389 4.389 14 C -0.057 4.057 15 C -0.343 4.343 16 C 0.167 3.833 17 C -0.468 4.468 18 H 0.099 0.901 19 C -0.153 4.153 20 N -0.337 5.337 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.254 5.254 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.219 0.781 39 H 0.227 0.773 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.756 -5.563 -7.491 12.796 hybrid contribution 0.122 0.191 0.274 0.356 sum 8.878 -5.372 -7.217 12.639 Atomic orbital electron populations 1.21718 0.95246 1.00076 1.03171 1.22015 0.97027 0.97305 1.01040 1.20859 0.92611 0.92393 0.89003 0.89369 1.21875 0.96209 0.95813 1.01892 1.21082 0.92481 0.96916 1.00457 0.89398 1.21782 1.01517 1.00818 0.95801 1.22280 0.95505 0.82878 0.98991 1.86547 1.26228 1.27038 1.97673 1.44170 1.27181 1.54121 1.10933 1.18483 0.85705 0.87829 0.90166 1.20619 1.04449 1.17255 0.96621 1.20581 0.94623 0.94585 0.95960 1.21501 1.05474 1.13181 0.94116 1.18178 0.86190 0.86936 0.92036 1.19562 1.09461 1.26976 0.90822 0.90065 1.26027 0.94329 0.94188 1.00723 1.70158 1.10317 1.23777 1.29485 0.86411 0.78942 0.80250 0.81647 1.19580 1.20309 1.18644 1.68231 1.18165 1.17522 1.21449 0.92743 0.94095 0.91752 0.92379 0.92290 0.91727 0.91260 0.93582 0.91972 0.92396 0.93983 0.94165 0.78071 0.77279 0.89105 0.89216 0.88963 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.65 37.16 0.32 -1.98 16 2 C -0.13 -1.87 5.61 -26.73 -0.15 -2.02 16 3 C 0.16 2.39 2.02 -67.93 -0.14 2.25 16 4 H 0.09 1.42 3.84 -51.92 -0.20 1.22 16 5 C -0.12 -1.48 4.29 -26.73 -0.11 -1.59 16 6 C -0.09 -1.25 2.57 -90.62 -0.23 -1.49 16 7 H 0.09 1.54 7.62 -51.93 -0.40 1.14 16 8 C -0.14 -1.96 8.85 37.16 0.33 -1.63 16 9 C 0.08 0.94 6.43 37.16 0.24 1.18 16 10 O -0.57 -7.17 13.19 -35.23 -0.46 -7.64 16 11 N -0.73 -14.08 4.29 -53.90 -0.23 -14.31 16 12 C 0.42 9.93 6.51 -155.32 -1.01 8.92 16 13 C -0.36 -8.19 8.04 -38.87 -0.31 -8.50 16 14 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 15 C -0.32 -8.20 9.83 -38.66 -0.38 -8.58 16 16 C 0.29 8.25 6.55 -85.00 -0.56 7.69 16 17 C -0.44 -12.01 9.14 -37.74 -0.34 -12.35 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 20 N -0.72 -19.23 11.46 55.55 0.64 -18.59 16 21 Si 0.90 19.09 29.56 -169.99 -5.02 14.06 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 N -0.53 -14.64 7.89 -10.33 -0.08 -14.72 16 26 H 0.05 0.87 7.21 -51.93 -0.37 0.49 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.26 7.01 -51.93 -0.36 0.89 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.94 6.46 -51.93 -0.34 0.60 16 35 H 0.06 0.85 7.82 -51.93 -0.41 0.45 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.37 2.79 9.12 45.56 0.42 3.21 16 39 H 0.39 7.80 8.84 -40.82 -0.36 7.44 16 40 H 0.09 1.83 5.24 -52.49 -0.27 1.56 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -30.60 342.41 -8.92 -39.52 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.07 Total: 14.01 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.85 Total: -17.49 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.32 Total: -47.62 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.46 Total: -7.64 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.60 -8.92 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320655727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.533 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds