Wall clock time and date at job start Tue Mar 31 2020 00:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47228 * 281.94914 * 3 2 1 5 5 C 1.37097 * 119.99960 * 271.64908 * 4 3 2 6 6 H 1.07999 * 119.99529 * 180.50334 * 5 4 3 7 7 C 1.38952 * 119.99785 * 0.50855 * 5 4 3 8 8 N 1.31411 * 120.00340 * 28.88145 * 7 5 4 9 9 Si 1.86805 * 119.99622 * 208.88115 * 7 5 4 10 10 H 1.48500 * 109.46848 * 94.99269 * 9 7 5 11 11 H 1.48502 * 109.46810 * 214.99394 * 9 7 5 12 12 H 1.48494 * 109.47135 * 334.99657 * 9 7 5 13 13 C 1.34779 * 119.99517 * 91.64767 * 4 3 2 14 14 O 1.21298 * 119.99451 * 185.14238 * 13 4 3 15 15 C 1.50697 * 120.00706 * 5.14890 * 13 4 3 16 16 H 1.09001 * 109.45731 * 329.39180 * 15 13 4 17 17 C 1.53046 * 109.46213 * 89.28793 * 15 13 4 18 18 C 1.53114 * 109.27522 * 179.13339 * 17 15 13 19 19 C 1.53121 * 109.21249 * 302.44505 * 18 17 15 20 20 C 1.53040 * 109.27907 * 57.62304 * 19 18 17 21 21 N 1.46842 * 109.46483 * 209.40837 * 15 13 4 22 22 C 1.46906 * 110.99666 * 54.14577 * 21 15 13 23 23 C 1.52997 * 109.47387 * 60.13514 * 22 21 15 24 24 C 1.53004 * 109.46900 * 180.02562 * 23 22 21 25 25 H 4.40641 * 5.51310 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47300 * 161.94738 * 3 2 1 27 27 H 1.09001 * 109.46910 * 41.94848 * 3 2 1 28 28 H 0.96998 * 119.99919 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.45174 * 59.22951 * 17 15 13 30 30 H 1.08995 * 109.55897 * 299.10983 * 17 15 13 31 31 H 1.08995 * 109.52872 * 182.50856 * 18 17 15 32 32 H 1.08997 * 109.52564 * 62.37843 * 18 17 15 33 33 H 1.09003 * 109.50370 * 177.56412 * 19 18 17 34 34 H 1.08996 * 109.50630 * 297.67815 * 19 18 17 35 35 H 1.08999 * 109.46218 * 60.83595 * 20 19 18 36 36 H 1.09003 * 109.46114 * 180.81624 * 20 19 18 37 37 H 1.09000 * 109.46856 * 180.13497 * 22 21 15 38 38 H 1.09006 * 109.47230 * 300.12950 * 22 21 15 39 39 H 1.09004 * 109.46650 * 299.99951 * 23 22 21 40 40 H 1.08999 * 109.47234 * 59.99887 * 23 22 21 41 41 H 1.09000 * 109.46978 * 299.99759 * 24 23 22 42 42 H 1.08999 * 109.47392 * 59.99834 * 24 23 22 43 43 H 1.09006 * 109.46554 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2851 1.3513 5 6 3.3304 0.7399 2.2404 6 1 3.6982 0.5300 3.2339 7 6 3.0554 2.0487 1.8633 8 7 2.1308 2.2925 0.9620 9 14 4.0004 3.4619 2.6378 10 1 5.1469 3.8266 1.7673 11 1 3.1014 4.6341 2.7896 12 1 4.5040 3.0482 3.9721 13 6 3.3913 -1.5557 1.7203 14 8 3.7059 -1.8028 2.8654 15 6 3.2879 -2.6693 0.7103 16 1 2.5292 -2.4180 -0.0309 17 6 4.6381 -2.8528 0.0134 18 6 4.5342 -3.9993 -0.9961 19 6 4.0951 -5.2731 -0.2686 20 6 2.7602 -5.0184 0.4352 21 7 2.9127 -3.9147 1.3918 22 6 1.6895 -3.7328 2.1849 23 6 0.5415 -3.3159 1.2636 24 6 -0.7322 -3.1259 2.0898 25 1 -1.0499 0.0002 0.0001 26 1 3.0090 0.9779 -0.3185 27 1 3.0097 -0.7635 -0.6870 28 1 1.9387 3.2061 0.6990 29 1 5.4004 -3.0896 0.7557 30 1 4.9084 -1.9336 -0.5062 31 1 5.5054 -4.1629 -1.4629 32 1 3.8005 -3.7456 -1.7612 33 1 3.9777 -6.0820 -0.9898 34 1 4.8486 -5.5490 0.4690 35 1 2.0039 -4.7560 -0.3045 36 1 2.4520 -5.9190 0.9662 37 1 1.4355 -4.6696 2.6809 38 1 1.8540 -2.9581 2.9340 39 1 0.7956 -2.3791 0.7676 40 1 0.3770 -4.0906 0.5146 41 1 -0.9864 -4.0625 2.5861 42 1 -0.5674 -2.3510 2.8385 43 1 -1.5500 -2.8284 1.4334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321199894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:33 Heat of formation + Delta-G solvation = 33.882108 kcal Electronic energy + Delta-G solvation = -23590.179525 eV Core-core repulsion = 20444.437605 eV Total energy + Delta-G solvation = -3145.741920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.86882 -37.51358 -35.12697 -34.64325 -32.21568 -31.35158 -31.23751 -30.53793 -26.59175 -26.06073 -24.85720 -23.08608 -22.96365 -21.13807 -19.76663 -18.29737 -17.90601 -16.58919 -16.26638 -15.57417 -15.14762 -14.58143 -14.51876 -14.08168 -13.78891 -13.73713 -13.35165 -13.26168 -13.06369 -12.41547 -12.36723 -12.15943 -11.83588 -11.60078 -11.41774 -11.30159 -11.13986 -11.02882 -10.93803 -10.58461 -10.49150 -10.47634 -10.26743 -10.08276 -9.98949 -9.38259 -9.23323 -8.76625 -8.27105 -7.95737 -7.69196 -6.38911 -3.76303 3.14410 3.26963 3.32101 3.61689 3.89474 4.04463 4.13496 4.30823 4.85838 4.96991 5.06478 5.17008 5.23127 5.33678 5.38397 5.45364 5.56669 5.61884 5.67254 5.73290 5.78595 5.90165 5.94649 5.97001 6.10232 6.14052 6.16445 6.21318 6.25915 6.34740 6.40490 6.44420 6.60206 6.66106 6.76313 6.84373 7.02193 7.44112 7.56061 7.57085 8.06094 8.45485 8.77019 9.16195 9.38765 9.96012 10.62177 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.006903 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.541228 B = 4055.501899 C = 4606.575601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.110 4.110 3 C 0.221 3.779 4 N -0.442 5.442 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.567 6.567 15 C 0.075 3.925 16 H 0.052 0.948 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.116 4.116 20 C 0.054 3.946 21 N -0.511 5.511 22 C 0.052 3.948 23 C -0.169 4.169 24 C -0.140 4.140 25 H 0.198 0.802 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.268 0.732 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -9.689 -6.466 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.112 4.112 3 C 0.098 3.902 4 N -0.161 5.161 5 C -0.441 4.441 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.496 5.496 9 Si 0.740 3.260 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.244 3.756 14 O -0.450 6.450 15 C -0.036 4.036 16 H 0.070 0.930 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.074 4.074 21 N -0.234 5.234 22 C -0.076 4.076 23 C -0.207 4.207 24 C -0.198 4.198 25 H 0.215 0.785 26 H 0.138 0.862 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.450 -9.751 -5.635 11.271 hybrid contribution -0.785 1.184 -0.346 1.462 sum -1.234 -8.567 -5.981 10.521 Atomic orbital electron populations 1.24232 0.95314 1.05956 1.02490 1.23229 0.94348 0.95613 0.97982 1.18641 0.84299 1.02430 0.84875 1.43808 1.55983 1.05324 1.10968 1.19700 1.42402 0.84212 0.97807 0.87398 1.25173 0.95705 0.98583 0.97562 1.70202 1.25411 1.21092 1.32861 0.86116 0.79783 0.80327 0.79806 1.20372 1.21256 1.19333 1.19663 0.84534 0.82628 0.88814 1.90515 1.52258 1.82232 1.19964 1.21549 0.97366 0.89994 0.94734 0.93022 1.21537 0.96742 0.98332 0.97943 1.21580 1.01076 0.95305 0.97674 1.21588 0.97614 0.97161 0.99028 1.22102 0.96529 0.94586 0.94214 1.61843 1.33487 1.04075 1.24041 1.22347 0.86522 1.02211 0.96531 1.22288 0.96699 1.02256 0.99502 1.21590 0.97047 1.01136 1.00046 0.78525 0.86217 0.92224 0.92188 0.90550 0.91306 0.91825 0.92398 0.92010 0.91091 0.95083 0.91067 0.91623 0.88770 0.90643 0.92893 0.93391 0.92488 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 18.55 29.55 0.55 -4.78 16 2 C -0.11 -2.44 10.38 -37.12 -0.39 -2.82 16 3 C 0.22 4.87 4.84 -6.83 -0.03 4.84 16 4 N -0.44 -10.96 2.59 -117.93 -0.30 -11.26 16 5 C -0.31 -8.56 9.43 -14.93 -0.14 -8.70 16 6 H 0.11 3.15 7.32 -52.49 -0.38 2.76 16 7 C 0.03 0.87 4.93 -17.47 -0.09 0.78 16 8 N -0.86 -21.98 9.25 55.50 0.51 -21.46 16 9 Si 0.91 20.32 29.64 -169.99 -5.04 15.28 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.46 10.89 5.70 -10.99 -0.06 10.83 16 14 O -0.57 -15.57 14.79 5.54 0.08 -15.49 16 15 C 0.08 1.43 0.85 -68.87 -0.06 1.37 16 16 H 0.05 0.98 4.73 -51.93 -0.25 0.74 16 17 C -0.11 -1.76 5.23 -26.65 -0.14 -1.90 16 18 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 19 C -0.12 -1.44 6.10 -26.65 -0.16 -1.60 16 20 C 0.05 0.76 5.00 -3.83 -0.02 0.74 16 21 N -0.51 -9.14 4.46 -228.07 -1.02 -10.15 16 22 C 0.05 0.93 4.88 -3.82 -0.02 0.92 16 23 C -0.17 -2.80 5.25 -26.73 -0.14 -2.94 16 24 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 25 H 0.20 3.32 7.80 -54.10 -0.42 2.90 16 26 H 0.12 2.80 5.97 -51.93 -0.31 2.49 16 27 H 0.06 1.13 5.63 -51.93 -0.29 0.84 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.10 7.66 -51.93 -0.40 0.70 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.43 6.71 -51.93 -0.35 0.08 16 36 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.09 2.08 5.99 -51.93 -0.31 1.77 16 39 H 0.08 1.44 4.36 -51.93 -0.23 1.21 16 40 H 0.05 0.79 6.63 -51.93 -0.34 0.44 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -29.70 331.52 -7.90 -37.60 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.64 Total: 7.20 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.49 Total: -6.71 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.81 Total: -42.88 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.04 Total: 15.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.70 -7.90 -37.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.483 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds