Wall clock time and date at job start Tue Mar 31 2020 00:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47228 * 281.94914 * 3 2 1 5 5 C 1.37097 * 119.99960 * 271.64908 * 4 3 2 6 6 H 1.07999 * 119.99529 * 180.50334 * 5 4 3 7 7 C 1.38952 * 119.99785 * 0.50855 * 5 4 3 8 8 N 1.31411 * 120.00340 * 28.88145 * 7 5 4 9 9 Si 1.86805 * 119.99622 * 208.88115 * 7 5 4 10 10 H 1.48500 * 109.46848 * 94.99269 * 9 7 5 11 11 H 1.48502 * 109.46810 * 214.99394 * 9 7 5 12 12 H 1.48494 * 109.47135 * 334.99657 * 9 7 5 13 13 C 1.34779 * 119.99517 * 91.64767 * 4 3 2 14 14 O 1.21298 * 119.99451 * 185.14238 * 13 4 3 15 15 C 1.50697 * 120.00706 * 5.14890 * 13 4 3 16 16 H 1.09001 * 109.45731 * 329.39180 * 15 13 4 17 17 C 1.53046 * 109.46213 * 89.28793 * 15 13 4 18 18 C 1.53114 * 109.27522 * 179.13339 * 17 15 13 19 19 C 1.53121 * 109.21249 * 302.44505 * 18 17 15 20 20 C 1.53040 * 109.27907 * 57.62304 * 19 18 17 21 21 N 1.46842 * 109.46483 * 209.40837 * 15 13 4 22 22 C 1.46906 * 110.99666 * 54.14577 * 21 15 13 23 23 C 1.52997 * 109.47387 * 60.13514 * 22 21 15 24 24 C 1.53004 * 109.46900 * 180.02562 * 23 22 21 25 25 H 4.40641 * 5.51310 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47300 * 161.94738 * 3 2 1 27 27 H 1.09001 * 109.46910 * 41.94848 * 3 2 1 28 28 H 0.96998 * 119.99919 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.45174 * 59.22951 * 17 15 13 30 30 H 1.08995 * 109.55897 * 299.10983 * 17 15 13 31 31 H 1.08995 * 109.52872 * 182.50856 * 18 17 15 32 32 H 1.08997 * 109.52564 * 62.37843 * 18 17 15 33 33 H 1.09003 * 109.50370 * 177.56412 * 19 18 17 34 34 H 1.08996 * 109.50630 * 297.67815 * 19 18 17 35 35 H 1.08999 * 109.46218 * 60.83595 * 20 19 18 36 36 H 1.09003 * 109.46114 * 180.81624 * 20 19 18 37 37 H 1.09000 * 109.46856 * 180.13497 * 22 21 15 38 38 H 1.09006 * 109.47230 * 300.12950 * 22 21 15 39 39 H 1.09004 * 109.46650 * 299.99951 * 23 22 21 40 40 H 1.08999 * 109.47234 * 59.99887 * 23 22 21 41 41 H 1.09000 * 109.46978 * 299.99759 * 24 23 22 42 42 H 1.08999 * 109.47392 * 59.99834 * 24 23 22 43 43 H 1.09006 * 109.46554 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2851 1.3513 5 6 3.3304 0.7399 2.2404 6 1 3.6982 0.5300 3.2339 7 6 3.0554 2.0487 1.8633 8 7 2.1308 2.2925 0.9620 9 14 4.0004 3.4619 2.6378 10 1 5.1469 3.8266 1.7673 11 1 3.1014 4.6341 2.7896 12 1 4.5040 3.0482 3.9721 13 6 3.3913 -1.5557 1.7203 14 8 3.7059 -1.8028 2.8654 15 6 3.2879 -2.6693 0.7103 16 1 2.5292 -2.4180 -0.0309 17 6 4.6381 -2.8528 0.0134 18 6 4.5342 -3.9993 -0.9961 19 6 4.0951 -5.2731 -0.2686 20 6 2.7602 -5.0184 0.4352 21 7 2.9127 -3.9147 1.3918 22 6 1.6895 -3.7328 2.1849 23 6 0.5415 -3.3159 1.2636 24 6 -0.7322 -3.1259 2.0898 25 1 -1.0499 0.0002 0.0001 26 1 3.0090 0.9779 -0.3185 27 1 3.0097 -0.7635 -0.6870 28 1 1.9387 3.2061 0.6990 29 1 5.4004 -3.0896 0.7557 30 1 4.9084 -1.9336 -0.5062 31 1 5.5054 -4.1629 -1.4629 32 1 3.8005 -3.7456 -1.7612 33 1 3.9777 -6.0820 -0.9898 34 1 4.8486 -5.5490 0.4690 35 1 2.0039 -4.7560 -0.3045 36 1 2.4520 -5.9190 0.9662 37 1 1.4355 -4.6696 2.6809 38 1 1.8540 -2.9581 2.9340 39 1 0.7956 -2.3791 0.7676 40 1 0.3770 -4.0906 0.5146 41 1 -0.9864 -4.0625 2.5861 42 1 -0.5674 -2.3510 2.8385 43 1 -1.5500 -2.8284 1.4334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321199894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:32 Heat of formation + Delta-G solvation = 15.864748 kcal Electronic energy + Delta-G solvation = -23590.960816 eV Core-core repulsion = 20444.437605 eV Total energy + Delta-G solvation = -3146.523211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43096 -39.11979 -37.02035 -35.90463 -34.08874 -33.06703 -32.53443 -31.93144 -28.37433 -27.45719 -26.57594 -24.58427 -24.17906 -22.46178 -21.20735 -19.86433 -19.65798 -18.36563 -18.03796 -16.97665 -16.62341 -16.41682 -15.98053 -15.54006 -15.40257 -15.02038 -14.80313 -14.54768 -14.51017 -14.11805 -13.87341 -13.63879 -13.50041 -13.23312 -12.83361 -12.66586 -12.64098 -12.42587 -12.36726 -12.29292 -12.14568 -11.78591 -11.57267 -11.40867 -11.23622 -11.16088 -11.01763 -10.53746 -10.11025 -9.90809 -9.07025 -8.37340 -5.82574 1.33551 1.41557 1.52433 1.86243 2.13145 2.33686 2.35818 2.87358 2.97673 3.30903 3.81353 3.89298 3.91036 4.00827 4.04067 4.14151 4.19495 4.30502 4.36473 4.38437 4.56505 4.62040 4.65426 4.78642 4.83105 4.89171 4.97224 5.00527 5.04040 5.10961 5.14915 5.21884 5.27527 5.28694 5.37593 5.40021 5.48888 5.51455 5.93611 6.13792 6.31313 6.49640 7.10808 7.17967 7.45875 8.05796 8.61536 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.006903 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.541228 B = 4055.501899 C = 4606.575601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.151 4.151 3 C 0.226 3.774 4 N -0.451 5.451 5 C -0.355 4.355 6 H 0.073 0.927 7 C 0.011 3.989 8 N -0.863 5.863 9 Si 0.974 3.026 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.449 3.551 14 O -0.616 6.616 15 C 0.090 3.910 16 H 0.056 0.944 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.113 4.113 20 C 0.051 3.949 21 N -0.529 5.529 22 C 0.056 3.944 23 C -0.161 4.161 24 C -0.137 4.137 25 H 0.230 0.770 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.273 0.727 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -10.901 -8.728 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.152 4.152 3 C 0.103 3.897 4 N -0.170 5.170 5 C -0.482 4.482 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.500 5.500 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.238 3.762 14 O -0.502 6.502 15 C -0.022 4.022 16 H 0.073 0.927 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.076 4.076 21 N -0.253 5.253 22 C -0.072 4.072 23 C -0.200 4.200 24 C -0.195 4.195 25 H 0.247 0.753 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.274 -10.960 -7.942 13.595 hybrid contribution -0.591 1.558 0.400 1.714 sum -1.865 -9.402 -7.542 12.197 Atomic orbital electron populations 1.25024 0.96174 1.04220 1.00653 1.23421 0.94897 0.97242 0.99652 1.18591 0.84830 1.02412 0.83826 1.43954 1.56077 1.05324 1.11639 1.19494 1.45027 0.86051 0.97610 0.90950 1.25779 0.95683 0.99810 0.98059 1.70267 1.25022 1.21798 1.32870 0.85233 0.78858 0.77537 0.78562 1.18978 1.20225 1.20600 1.20614 0.82905 0.83435 0.89217 1.90467 1.54222 1.83136 1.22386 1.21390 0.98918 0.88793 0.93082 0.92655 1.21578 0.94470 1.00282 0.98309 1.21574 1.02895 0.93714 0.96707 1.21616 0.96216 0.97861 0.99375 1.22279 0.98016 0.93428 0.93876 1.61831 1.33662 1.04419 1.25426 1.22198 0.87519 1.01397 0.96102 1.22197 0.96491 1.01661 0.99628 1.21569 0.96903 1.01407 0.99581 0.75300 0.87902 0.89468 0.91673 0.92589 0.91327 0.89527 0.91108 0.88540 0.91982 0.94137 0.89452 0.89660 0.93951 0.93188 0.90307 0.91166 0.95345 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.58 18.55 74.32 1.38 -8.20 16 2 C -0.15 -6.65 10.38 31.12 0.32 -6.33 16 3 C 0.23 10.13 4.84 84.57 0.41 10.54 16 4 N -0.45 -23.42 2.59 -645.40 -1.67 -25.09 16 5 C -0.35 -20.37 9.43 84.04 0.79 -19.58 16 6 H 0.07 4.57 7.32 -2.91 -0.02 4.55 16 7 C 0.01 0.56 4.93 84.93 0.42 0.98 16 8 N -0.86 -44.46 9.25 21.66 0.20 -44.26 16 9 Si 0.97 42.44 29.64 68.60 2.03 44.47 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.45 22.54 5.70 87.66 0.50 23.04 16 14 O -0.62 -36.31 14.79 -3.09 -0.05 -36.35 16 15 C 0.09 3.44 0.85 44.19 0.04 3.47 16 16 H 0.06 2.07 4.73 -2.39 -0.01 2.06 16 17 C -0.11 -3.49 5.23 30.65 0.16 -3.33 16 18 C -0.11 -2.52 6.00 30.67 0.18 -2.34 16 19 C -0.11 -2.41 6.10 30.65 0.19 -2.22 16 20 C 0.05 1.29 5.00 86.33 0.43 1.72 16 21 N -0.53 -18.70 4.46 -875.48 -3.90 -22.60 16 22 C 0.06 2.03 4.88 86.30 0.42 2.45 16 23 C -0.16 -5.15 5.25 30.59 0.16 -4.99 16 24 C -0.14 -3.97 9.91 71.98 0.71 -3.26 16 25 H 0.23 7.11 7.80 -4.42 -0.03 7.08 16 26 H 0.10 4.91 5.97 -2.39 -0.01 4.90 16 27 H 0.09 3.31 5.63 -2.39 -0.01 3.29 16 28 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 29 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 2.17 7.66 -2.39 -0.02 2.15 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 0.97 6.71 -2.39 -0.02 0.95 16 36 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 37 H 0.09 2.68 8.10 -2.39 -0.02 2.66 16 38 H 0.04 1.98 5.99 -2.38 -0.01 1.97 16 39 H 0.05 1.87 4.36 -2.38 -0.01 1.86 16 40 H 0.08 2.11 6.63 -2.39 -0.02 2.09 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -68.58 331.52 3.72 -64.86 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.99 Total: 26.99 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 6.12 Total: -8.03 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -5.37 Total: -91.94 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.05 Total: -36.35 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.58 3.72 -64.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.728 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds