Wall clock time and date at job start Tue Mar 31 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47003 * 266.28455 * 3 2 1 5 5 C 1.37097 * 120.00477 * 95.51742 * 4 3 2 6 6 H 1.08001 * 120.00426 * 153.23855 * 5 4 3 7 7 C 1.38948 * 119.99787 * 333.24499 * 5 4 3 8 8 N 1.31412 * 119.99995 * 2.83432 * 7 5 4 9 9 Si 1.86808 * 120.00092 * 182.82895 * 7 5 4 10 10 H 1.48496 * 109.46965 * 265.00796 * 9 7 5 11 11 H 1.48497 * 109.46892 * 25.00445 * 9 7 5 12 12 H 1.48494 * 109.46900 * 145.00269 * 9 7 5 13 13 C 1.34776 * 119.99981 * 275.51713 * 4 3 2 14 14 O 1.21297 * 120.00360 * 175.81304 * 13 4 3 15 15 C 1.50707 * 119.99758 * 355.81006 * 13 4 3 16 16 H 1.08994 * 109.45996 * 31.83029 * 15 13 4 17 17 C 1.53040 * 109.46010 * 271.84944 * 15 13 4 18 18 C 1.53127 * 109.27611 * 180.80622 * 17 15 13 19 19 C 1.53117 * 109.15903 * 57.65248 * 18 17 15 20 20 C 1.53030 * 109.28278 * 302.34694 * 19 18 17 21 21 N 1.46842 * 109.46132 * 151.80968 * 15 13 4 22 22 C 1.46899 * 111.00089 * 305.85549 * 21 15 13 23 23 C 1.53008 * 109.47323 * 171.92609 * 22 21 15 24 24 C 1.53001 * 109.46921 * 179.97438 * 23 22 21 25 25 H 4.40639 * 5.51512 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46983 * 146.28137 * 3 2 1 27 27 H 1.09006 * 109.47129 * 26.28199 * 3 2 1 28 28 H 0.97002 * 119.99942 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.50571 * 300.74228 * 17 15 13 30 30 H 1.08999 * 109.50212 * 60.86839 * 17 15 13 31 31 H 1.09001 * 109.52369 * 177.56304 * 18 17 15 32 32 H 1.09008 * 109.52052 * 297.75101 * 18 17 15 33 33 H 1.08997 * 109.50281 * 62.29359 * 19 18 17 34 34 H 1.09003 * 109.49866 * 182.40349 * 19 18 17 35 35 H 1.08999 * 109.46623 * 179.19723 * 20 19 18 36 36 H 1.08997 * 109.46398 * 299.17413 * 20 19 18 37 37 H 1.09006 * 109.47124 * 291.92208 * 22 21 15 38 38 H 1.08996 * 109.46994 * 51.92418 * 22 21 15 39 39 H 1.08997 * 109.46733 * 299.99672 * 23 22 21 40 40 H 1.09000 * 109.46784 * 59.99802 * 23 22 21 41 41 H 1.08998 * 109.46767 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47325 * 300.00029 * 24 23 22 43 43 H 1.08996 * 109.47088 * 59.99997 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0904 1.3783 5 6 3.4709 -1.0493 2.0619 6 1 4.2017 -1.0068 2.8560 7 6 2.8719 -2.2592 1.7331 8 7 2.0245 -2.3218 0.7306 9 14 3.2714 -3.7968 2.7159 10 1 4.3530 -4.5525 2.0347 11 1 3.7192 -3.4110 4.0781 12 1 2.0594 -4.6489 2.8161 13 6 3.2525 1.2934 1.9743 14 8 3.5839 1.3633 3.1391 15 6 2.9731 2.5518 1.1936 16 1 2.2034 2.3532 0.4479 17 6 4.2539 3.0128 0.4942 18 6 3.9702 4.3024 -0.2812 19 6 3.4417 5.3648 0.6865 20 6 2.1846 4.8356 1.3804 21 7 2.5086 3.6022 2.1086 22 6 1.3599 3.1410 2.8997 23 6 1.0319 4.1786 3.9754 24 6 -0.1649 3.6985 4.7989 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8556 -0.5705 27 1 3.0097 -0.9207 -0.4551 28 1 1.6061 -3.1663 0.5013 29 1 5.0282 3.1986 1.2384 30 1 4.5899 2.2394 -0.1964 31 1 4.8900 4.6580 -0.7457 32 1 3.2238 4.1077 -1.0514 33 1 4.2033 5.5876 1.4337 34 1 3.1976 6.2717 0.1333 35 1 1.8138 5.5841 2.0806 36 1 1.4186 4.6259 0.6338 37 1 0.4975 3.0103 2.2461 38 1 1.6037 2.1905 3.3742 39 1 1.8943 4.3093 4.6290 40 1 0.7881 5.1292 3.5008 41 1 -0.3982 4.4374 5.5654 42 1 -1.0270 3.5680 4.1450 43 1 0.0785 2.7479 5.2733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321199903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:36 Heat of formation + Delta-G solvation = 29.141810 kcal Electronic energy + Delta-G solvation = -23215.981361 eV Core-core repulsion = 20070.033887 eV Total energy + Delta-G solvation = -3145.947474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.71412 -37.49174 -35.13359 -34.62737 -32.15990 -31.55225 -31.24701 -30.47779 -26.53720 -26.07604 -24.83012 -23.30833 -22.85773 -20.45587 -19.90755 -18.66321 -17.80444 -16.72568 -16.24807 -15.59468 -14.97557 -14.58840 -14.49211 -14.32928 -13.77216 -13.56704 -13.30022 -13.26077 -13.11125 -12.53249 -12.34564 -12.20775 -11.90992 -11.54610 -11.33601 -11.31141 -11.09660 -10.94326 -10.79308 -10.61430 -10.56130 -10.51144 -10.34583 -10.12366 -9.88894 -9.45014 -9.22841 -8.73879 -8.28821 -7.82657 -7.73227 -6.26591 -3.92588 3.16480 3.26145 3.31854 3.66358 3.90966 4.08631 4.14695 4.26676 4.87580 5.02376 5.08601 5.15972 5.21708 5.34745 5.38637 5.46771 5.57379 5.63911 5.65198 5.75606 5.82735 5.86005 5.95465 6.00501 6.05111 6.12654 6.14426 6.18922 6.29130 6.35733 6.38490 6.40615 6.56559 6.67430 6.68409 6.90183 7.10164 7.46271 7.54965 7.57077 8.14387 8.48610 8.82294 9.17296 9.36956 9.95214 10.72053 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.006421 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.842650 B = 4359.606670 C = 4848.990788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.101 4.101 3 C 0.229 3.771 4 N -0.447 5.447 5 C -0.305 4.305 6 H 0.099 0.901 7 C 0.032 3.968 8 N -0.877 5.877 9 Si 0.925 3.075 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.465 3.535 14 O -0.560 6.560 15 C 0.075 3.925 16 H 0.051 0.949 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.053 3.947 21 N -0.512 5.512 22 C 0.052 3.948 23 C -0.115 4.115 24 C -0.150 4.150 25 H 0.197 0.803 26 H 0.054 0.946 27 H 0.122 0.878 28 H 0.268 0.732 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 11.106 -3.190 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.103 4.103 3 C 0.106 3.894 4 N -0.167 5.167 5 C -0.433 4.433 6 H 0.116 0.884 7 C -0.171 4.171 8 N -0.516 5.516 9 Si 0.752 3.248 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.252 3.748 14 O -0.442 6.442 15 C -0.037 4.037 16 H 0.069 0.931 17 C -0.144 4.144 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.075 4.075 21 N -0.237 5.237 22 C -0.076 4.076 23 C -0.153 4.153 24 C -0.207 4.207 25 H 0.214 0.786 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.917 11.054 -2.359 11.340 hybrid contribution -1.032 -1.212 -0.291 1.618 sum -1.949 9.843 -2.650 10.378 Atomic orbital electron populations 1.24244 0.95378 1.07281 1.02614 1.23283 0.94432 0.94715 0.97877 1.18414 0.84053 1.01818 0.85093 1.43638 1.57003 1.05174 1.10849 1.19614 1.22074 0.84381 1.17232 0.88355 1.25386 0.95210 0.99648 0.96814 1.69896 1.28295 1.26584 1.26860 0.85923 0.77714 0.80888 0.80273 1.20491 1.19377 1.20948 1.19932 0.83433 0.84015 0.87431 1.90527 1.50829 1.86364 1.16470 1.21563 0.97398 0.91292 0.93459 0.93123 1.21519 0.96990 0.96922 0.98958 1.21587 1.00778 0.95566 0.97704 1.21579 0.97918 0.97451 0.98380 1.22151 0.96290 0.92866 0.96233 1.61619 1.34514 1.03385 1.24210 1.22246 0.90292 1.00225 0.94834 1.21490 0.98308 0.97885 0.97594 1.21720 0.97976 1.01411 0.99642 0.78594 0.92850 0.86088 0.92167 0.90599 0.91263 0.91810 0.92341 0.91083 0.92006 0.90627 0.95493 0.95956 0.88737 0.91145 0.92747 0.92992 0.93172 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.86 19.25 29.55 0.57 -5.29 16 2 C -0.10 -2.31 10.72 -37.12 -0.40 -2.71 16 3 C 0.23 5.14 4.78 -6.83 -0.03 5.11 16 4 N -0.45 -11.24 2.60 -117.93 -0.31 -11.54 16 5 C -0.31 -8.35 9.20 -14.93 -0.14 -8.49 16 6 H 0.10 2.81 7.51 -52.49 -0.39 2.41 16 7 C 0.03 0.84 5.33 -17.47 -0.09 0.75 16 8 N -0.88 -22.88 8.76 55.50 0.49 -22.40 16 9 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.46 11.26 5.58 -10.98 -0.06 11.20 16 14 O -0.56 -15.45 14.97 5.54 0.08 -15.36 16 15 C 0.07 1.45 1.42 -68.87 -0.10 1.35 16 16 H 0.05 1.00 6.06 -51.93 -0.31 0.69 16 17 C -0.11 -1.74 5.21 -26.64 -0.14 -1.88 16 18 C -0.12 -1.53 6.00 -26.60 -0.16 -1.69 16 19 C -0.12 -1.44 6.09 -26.66 -0.16 -1.60 16 20 C 0.05 0.76 5.28 -3.84 -0.02 0.74 16 21 N -0.51 -9.31 4.27 -228.08 -0.97 -10.28 16 22 C 0.05 0.96 4.59 -3.82 -0.02 0.94 16 23 C -0.11 -1.74 5.82 -26.73 -0.16 -1.90 16 24 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 25 H 0.20 3.43 7.80 -54.09 -0.42 3.00 16 26 H 0.05 1.03 5.78 -51.93 -0.30 0.73 16 27 H 0.12 2.88 6.38 -51.93 -0.33 2.55 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.10 7.33 -51.93 -0.38 0.72 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.99 6.13 -51.93 -0.32 0.67 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 2.16 5.75 -51.93 -0.30 1.86 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.73 6.37 -51.93 -0.33 0.39 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -30.09 337.62 -8.06 -38.15 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.88 Total: 5.68 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.54 Total: -5.14 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.79 Total: -44.22 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.09 -8.06 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.288 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds