Wall clock time and date at job start Tue Mar 31 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47003 * 266.28455 * 3 2 1 5 5 C 1.37097 * 120.00477 * 95.51742 * 4 3 2 6 6 H 1.08001 * 120.00426 * 153.23855 * 5 4 3 7 7 C 1.38948 * 119.99787 * 333.24499 * 5 4 3 8 8 N 1.31412 * 119.99995 * 2.83432 * 7 5 4 9 9 Si 1.86808 * 120.00092 * 182.82895 * 7 5 4 10 10 H 1.48496 * 109.46965 * 265.00796 * 9 7 5 11 11 H 1.48497 * 109.46892 * 25.00445 * 9 7 5 12 12 H 1.48494 * 109.46900 * 145.00269 * 9 7 5 13 13 C 1.34776 * 119.99981 * 275.51713 * 4 3 2 14 14 O 1.21297 * 120.00360 * 175.81304 * 13 4 3 15 15 C 1.50707 * 119.99758 * 355.81006 * 13 4 3 16 16 H 1.08994 * 109.45996 * 31.83029 * 15 13 4 17 17 C 1.53040 * 109.46010 * 271.84944 * 15 13 4 18 18 C 1.53127 * 109.27611 * 180.80622 * 17 15 13 19 19 C 1.53117 * 109.15903 * 57.65248 * 18 17 15 20 20 C 1.53030 * 109.28278 * 302.34694 * 19 18 17 21 21 N 1.46842 * 109.46132 * 151.80968 * 15 13 4 22 22 C 1.46899 * 111.00089 * 305.85549 * 21 15 13 23 23 C 1.53008 * 109.47323 * 171.92609 * 22 21 15 24 24 C 1.53001 * 109.46921 * 179.97438 * 23 22 21 25 25 H 4.40639 * 5.51512 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46983 * 146.28137 * 3 2 1 27 27 H 1.09006 * 109.47129 * 26.28199 * 3 2 1 28 28 H 0.97002 * 119.99942 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.50571 * 300.74228 * 17 15 13 30 30 H 1.08999 * 109.50212 * 60.86839 * 17 15 13 31 31 H 1.09001 * 109.52369 * 177.56304 * 18 17 15 32 32 H 1.09008 * 109.52052 * 297.75101 * 18 17 15 33 33 H 1.08997 * 109.50281 * 62.29359 * 19 18 17 34 34 H 1.09003 * 109.49866 * 182.40349 * 19 18 17 35 35 H 1.08999 * 109.46623 * 179.19723 * 20 19 18 36 36 H 1.08997 * 109.46398 * 299.17413 * 20 19 18 37 37 H 1.09006 * 109.47124 * 291.92208 * 22 21 15 38 38 H 1.08996 * 109.46994 * 51.92418 * 22 21 15 39 39 H 1.08997 * 109.46733 * 299.99672 * 23 22 21 40 40 H 1.09000 * 109.46784 * 59.99802 * 23 22 21 41 41 H 1.08998 * 109.46767 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47325 * 300.00029 * 24 23 22 43 43 H 1.08996 * 109.47088 * 59.99997 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0904 1.3783 5 6 3.4709 -1.0493 2.0619 6 1 4.2017 -1.0068 2.8560 7 6 2.8719 -2.2592 1.7331 8 7 2.0245 -2.3218 0.7306 9 14 3.2714 -3.7968 2.7159 10 1 4.3530 -4.5525 2.0347 11 1 3.7192 -3.4110 4.0781 12 1 2.0594 -4.6489 2.8161 13 6 3.2525 1.2934 1.9743 14 8 3.5839 1.3633 3.1391 15 6 2.9731 2.5518 1.1936 16 1 2.2034 2.3532 0.4479 17 6 4.2539 3.0128 0.4942 18 6 3.9702 4.3024 -0.2812 19 6 3.4417 5.3648 0.6865 20 6 2.1846 4.8356 1.3804 21 7 2.5086 3.6022 2.1086 22 6 1.3599 3.1410 2.8997 23 6 1.0319 4.1786 3.9754 24 6 -0.1649 3.6985 4.7989 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8556 -0.5705 27 1 3.0097 -0.9207 -0.4551 28 1 1.6061 -3.1663 0.5013 29 1 5.0282 3.1986 1.2384 30 1 4.5899 2.2394 -0.1964 31 1 4.8900 4.6580 -0.7457 32 1 3.2238 4.1077 -1.0514 33 1 4.2033 5.5876 1.4337 34 1 3.1976 6.2717 0.1333 35 1 1.8138 5.5841 2.0806 36 1 1.4186 4.6259 0.6338 37 1 0.4975 3.0103 2.2461 38 1 1.6037 2.1905 3.3742 39 1 1.8943 4.3093 4.6290 40 1 0.7881 5.1292 3.5008 41 1 -0.3982 4.4374 5.5654 42 1 -1.0270 3.5680 4.1450 43 1 0.0785 2.7479 5.2733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321199903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:36 Heat of formation + Delta-G solvation = 11.213916 kcal Electronic energy + Delta-G solvation = -23216.758773 eV Core-core repulsion = 20070.033887 eV Total energy + Delta-G solvation = -3146.724886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32747 -39.09809 -37.02620 -35.92112 -34.03878 -33.06953 -32.79279 -31.87858 -28.34979 -27.46776 -26.59751 -24.57341 -24.32778 -21.75997 -21.28688 -20.25157 -19.65538 -18.52816 -18.05196 -17.05850 -16.50506 -16.28480 -15.96442 -15.88691 -15.38713 -14.94179 -14.75892 -14.59871 -14.37878 -14.11687 -13.86942 -13.84080 -13.40441 -13.18686 -12.94463 -12.85059 -12.55674 -12.50789 -12.26174 -12.17556 -12.03431 -11.80429 -11.66990 -11.49735 -11.28849 -11.07502 -11.04326 -10.56961 -10.16557 -9.76017 -9.20423 -8.27066 -6.01104 1.34605 1.38765 1.50118 1.86913 2.10253 2.29916 2.37150 2.78661 3.08133 3.23337 3.80399 3.88632 3.89354 3.98249 4.08070 4.16103 4.21166 4.32328 4.36756 4.43695 4.53582 4.58740 4.66981 4.74007 4.81636 4.89497 4.92517 5.04286 5.06791 5.10379 5.12641 5.20841 5.27981 5.31327 5.36529 5.40459 5.42976 5.50531 5.96917 6.15009 6.28064 6.51070 7.09373 7.16509 7.41590 8.01137 8.68293 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.006421 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.842650 B = 4359.606670 C = 4848.990788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.143 4.143 3 C 0.235 3.765 4 N -0.458 5.458 5 C -0.341 4.341 6 H 0.071 0.929 7 C 0.002 3.998 8 N -0.882 5.882 9 Si 0.984 3.016 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.457 3.543 14 O -0.606 6.606 15 C 0.086 3.914 16 H 0.050 0.950 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.112 4.112 20 C 0.049 3.951 21 N -0.526 5.526 22 C 0.057 3.943 23 C -0.106 4.106 24 C -0.147 4.147 25 H 0.231 0.769 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.270 0.730 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.032 0.968 37 H 0.020 0.980 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 12.823 -4.523 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.144 4.144 3 C 0.112 3.888 4 N -0.178 5.178 5 C -0.469 4.469 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.520 5.520 9 Si 0.808 3.192 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.246 3.754 14 O -0.491 6.491 15 C -0.026 4.026 16 H 0.067 0.933 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.078 4.078 21 N -0.252 5.252 22 C -0.071 4.071 23 C -0.144 4.144 24 C -0.204 4.204 25 H 0.248 0.752 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.988 12.780 -3.738 13.463 hybrid contribution -0.741 -1.750 0.133 1.905 sum -2.729 11.031 -3.605 11.921 Atomic orbital electron populations 1.25101 0.96342 1.05584 1.00826 1.23553 0.95081 0.96288 0.99507 1.18379 0.84410 1.02193 0.83773 1.43828 1.57013 1.05035 1.11885 1.19530 1.23178 0.86179 1.17988 0.91098 1.26026 0.94889 1.01597 0.97461 1.70018 1.27981 1.27169 1.26875 0.85054 0.78037 0.77704 0.78357 1.18834 1.20626 1.20182 1.20832 0.81975 0.85297 0.87295 1.90479 1.52743 1.87236 1.18642 1.21444 0.98806 0.89496 0.92810 0.93268 1.21549 0.94813 0.99201 0.98712 1.21585 1.02408 0.93444 0.97484 1.21608 0.96642 0.98431 0.98265 1.22341 0.97658 0.91134 0.96637 1.61666 1.34570 1.04181 1.24762 1.22118 0.90281 0.99153 0.95590 1.21441 0.98407 0.97986 0.96565 1.21709 0.97504 1.01077 1.00150 0.75240 0.89911 0.87857 0.91949 0.92341 0.91181 0.89307 0.91297 0.91704 0.88505 0.88896 0.94981 0.96184 0.93942 0.92455 0.89936 0.90344 0.92401 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.69 19.25 74.32 1.43 -9.26 16 2 C -0.14 -6.49 10.72 31.13 0.33 -6.16 16 3 C 0.23 10.74 4.78 84.57 0.40 11.14 16 4 N -0.46 -24.05 2.60 -645.39 -1.68 -25.73 16 5 C -0.34 -19.57 9.20 84.04 0.77 -18.80 16 6 H 0.07 4.35 7.51 -2.91 -0.02 4.33 16 7 C 0.00 0.12 5.33 84.93 0.45 0.57 16 8 N -0.88 -46.42 8.76 21.66 0.19 -46.23 16 9 Si 0.98 43.51 29.55 68.60 2.03 45.54 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 13 C 0.46 23.21 5.58 87.66 0.49 23.70 16 14 O -0.61 -35.65 14.97 -3.08 -0.05 -35.70 16 15 C 0.09 3.38 1.42 44.20 0.06 3.44 16 16 H 0.05 1.93 6.06 -2.39 -0.01 1.92 16 17 C -0.10 -3.37 5.21 30.65 0.16 -3.21 16 18 C -0.11 -2.55 6.00 30.68 0.18 -2.36 16 19 C -0.11 -2.40 6.09 30.64 0.19 -2.22 16 20 C 0.05 1.29 5.28 86.32 0.46 1.74 16 21 N -0.53 -18.99 4.27 -875.50 -3.74 -22.73 16 22 C 0.06 2.14 4.59 86.31 0.40 2.54 16 23 C -0.11 -3.14 5.82 30.60 0.18 -2.96 16 24 C -0.15 -3.87 9.91 71.98 0.71 -3.15 16 25 H 0.23 7.41 7.80 -4.41 -0.03 7.38 16 26 H 0.08 3.19 5.78 -2.38 -0.01 3.18 16 27 H 0.10 5.05 6.38 -2.38 -0.02 5.03 16 28 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.20 7.33 -2.39 -0.02 2.18 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.10 6.13 -2.39 -0.01 2.09 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.04 2.05 5.75 -2.39 -0.01 2.04 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.97 6.37 -2.39 -0.02 1.96 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.96 337.62 3.95 -65.01 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.98 Total: 24.82 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.22 Total: -4.99 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -5.22 Total: -94.68 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.05 Total: -35.70 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.96 3.95 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.225 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds