Wall clock time and date at job start Tue Mar 31 2020 00:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 H 1.09003 * 109.47381 * 305.00074 * 3 2 1 5 5 C 1.52997 * 109.47137 * 65.00107 * 3 2 1 6 6 C 1.53004 * 109.46982 * 185.00042 * 3 2 1 7 7 C 1.52997 * 109.47132 * 60.00062 * 6 3 2 8 8 O 1.42901 * 109.46990 * 300.00253 * 6 3 2 9 9 C 1.53008 * 109.46964 * 180.02562 * 6 3 2 10 10 N 1.46497 * 109.46841 * 185.00012 * 9 6 3 11 11 C 1.38822 * 120.00127 * 179.97438 * 10 9 6 12 12 C 1.39804 * 119.57859 * 359.72687 * 11 10 9 13 13 C 1.38603 * 119.48498 * 179.78647 * 12 11 10 14 14 C 1.38392 * 118.68000 * 0.48266 * 13 12 11 15 15 C 1.40554 * 119.15008 * 359.74044 * 14 13 12 16 16 C 1.41311 * 119.78208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00400 * 353.70838 * 16 15 14 18 18 C 1.40027 * 120.00226 * 173.71207 * 16 15 14 19 19 N 1.30744 * 119.99491 * 6.28382 * 18 16 15 20 20 Si 1.86799 * 120.00215 * 186.28947 * 18 16 15 21 21 H 1.48501 * 109.46991 * 94.98356 * 20 18 16 22 22 H 1.48503 * 109.46874 * 214.97838 * 20 18 16 23 23 H 1.48502 * 109.47036 * 334.98198 * 20 18 16 24 24 N 1.31950 * 119.58590 * 179.97438 * 11 10 9 25 25 H 1.09001 * 109.46948 * 299.99341 * 1 2 3 26 26 H 1.08991 * 109.47241 * 60.00531 * 1 2 3 27 27 H 1.09002 * 109.46795 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46795 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.47064 * 120.00250 * 2 1 3 30 30 H 1.09003 * 109.47013 * 59.99741 * 5 3 2 31 31 H 1.08998 * 109.47283 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47478 * 299.99625 * 5 3 2 33 33 H 1.08994 * 109.47262 * 179.97438 * 7 6 3 34 34 H 1.08998 * 109.47283 * 300.00272 * 7 6 3 35 35 H 1.09003 * 109.47013 * 60.00102 * 7 6 3 36 36 H 0.96706 * 113.99356 * 299.99816 * 8 6 3 37 37 H 1.09003 * 109.46588 * 305.00041 * 9 6 3 38 38 H 1.08992 * 109.46912 * 65.00062 * 9 6 3 39 39 H 0.97001 * 119.99912 * 359.97438 * 10 9 6 40 40 H 1.07994 * 120.26096 * 359.97438 * 12 11 10 41 41 H 1.08001 * 120.65715 * 180.22552 * 13 12 11 42 42 H 1.08004 * 120.42158 * 179.77085 * 14 13 12 43 43 H 0.97007 * 119.99768 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 3.9696 0.7604 -1.4331 8 8 4.1346 0.7376 0.9779 9 6 4.0748 2.8869 -0.1251 10 7 5.5200 2.8940 -0.3649 11 6 6.2104 4.0975 -0.4090 12 6 5.5169 5.2980 -0.2290 13 6 6.2089 6.4983 -0.2690 14 6 7.5735 6.4709 -0.4975 15 6 8.2131 5.2320 -0.6757 16 6 9.6061 5.1884 -0.9093 17 1 10.1588 6.1053 -1.0518 18 6 10.2700 3.9564 -0.9563 19 7 9.5861 2.8432 -0.9071 20 14 12.1325 3.9035 -1.0890 21 1 12.7217 3.7683 0.2674 22 1 12.5365 2.7425 -1.9221 23 1 12.6198 5.1576 -1.7176 24 7 7.5121 4.0943 -0.6251 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0698 1.5874 2.1491 31 1 1.9988 3.1540 1.3076 32 1 0.5489 2.1252 1.3970 33 1 5.0558 0.7621 -1.5229 34 1 3.6063 -0.2673 -1.4331 35 1 3.5349 1.2994 -2.2749 36 1 3.9190 1.1166 1.8411 37 1 3.5730 3.4500 -0.9121 38 1 3.8645 3.3461 0.8407 39 1 5.9945 2.0577 -0.4930 40 1 4.4507 5.2901 -0.0572 41 1 5.6926 7.4365 -0.1287 42 1 8.1398 7.3896 -0.5380 43 1 10.0460 1.9897 -0.9393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:29 Heat of formation + Delta-G solvation = -29.813631 kcal Electronic energy + Delta-G solvation = -22028.484067 eV Core-core repulsion = 18879.980093 eV Total energy + Delta-G solvation = -3148.503974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.54022 -38.01451 -35.02636 -34.39275 -33.17641 -31.15180 -30.25997 -29.62525 -28.65311 -25.61710 -25.28224 -24.55215 -21.69985 -21.31492 -20.18070 -19.67205 -17.39411 -16.71259 -16.43223 -15.30196 -15.00610 -14.87916 -14.62949 -14.16658 -14.11453 -13.79388 -13.27767 -13.09479 -12.74531 -12.65650 -12.26984 -12.20031 -11.92488 -11.91485 -11.72915 -11.69948 -11.53452 -11.16115 -10.98813 -10.95145 -10.73050 -10.61091 -10.42754 -10.22399 -9.88840 -9.63404 -9.42504 -8.83631 -7.86445 -7.45345 -6.44503 -6.28927 -4.43053 2.91212 3.14234 3.17770 3.27769 3.33961 4.01827 4.04745 4.45556 4.65608 4.73444 4.74795 4.88103 5.06272 5.13958 5.31510 5.34743 5.41190 5.54525 5.76118 5.78461 5.82467 5.86564 5.91132 5.95178 5.99984 6.04352 6.12929 6.19073 6.25889 6.28453 6.42004 6.60212 6.90829 6.93250 6.99146 7.29842 7.64177 7.74738 7.85789 7.96042 8.22605 8.42237 8.76092 8.85331 9.17458 10.29642 10.45321 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004053 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.201231 B = 6906.452550 C = 7715.896721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.114 4.114 4 H 0.078 0.922 5 C -0.158 4.158 6 C 0.127 3.873 7 C -0.141 4.141 8 O -0.551 6.551 9 C 0.118 3.882 10 N -0.731 5.731 11 C 0.412 3.588 12 C -0.369 4.369 13 C -0.032 4.032 14 C -0.318 4.318 15 C 0.293 3.707 16 C -0.436 4.436 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.262 1.262 24 N -0.532 5.532 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.372 0.628 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.399 0.601 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 -5.694 1.918 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.133 4.133 4 H 0.097 0.903 5 C -0.215 4.215 6 C 0.086 3.914 7 C -0.198 4.198 8 O -0.357 6.357 9 C -0.008 4.008 10 N -0.369 5.369 11 C 0.171 3.829 12 C -0.395 4.395 13 C -0.057 4.057 14 C -0.341 4.341 15 C 0.166 3.834 16 C -0.468 4.468 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.336 5.336 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.253 5.253 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.235 0.765 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.437 -6.991 1.340 15.206 hybrid contribution 0.211 0.951 0.512 1.100 sum -13.226 -6.040 1.851 14.657 Atomic orbital electron populations 1.21843 0.96230 1.01323 1.01699 1.21537 0.95141 0.95898 1.02769 1.21757 0.95276 0.97138 0.99112 0.90321 1.21988 1.01751 1.00811 0.96965 1.21423 0.90943 0.90842 0.88157 1.21776 1.03127 1.00548 0.94323 1.86562 1.76404 1.56368 1.16382 1.21741 0.83153 0.95562 1.00361 1.44091 1.05194 1.06369 1.81261 1.18549 0.90058 0.84529 0.89716 1.20590 0.98192 0.92724 1.28009 1.20587 0.94109 0.95647 0.95315 1.21530 0.94603 0.98146 1.19801 1.18203 0.92897 0.85618 0.86704 1.19575 0.91643 0.93392 1.42185 0.89923 1.26048 1.00167 0.95519 0.93643 1.70161 1.36381 0.97991 1.29088 0.86371 0.82914 0.78879 0.78932 1.19603 1.20257 1.18603 1.68220 1.02836 1.29488 1.24798 0.92660 0.92932 0.93018 0.91596 0.91464 0.92521 0.91981 0.92090 0.91148 0.91797 0.91267 0.78008 0.92634 0.92887 0.76487 0.89439 0.89058 0.88771 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.08 4.97 -26.73 -0.13 -1.21 16 3 C -0.11 -1.14 1.81 -90.62 -0.16 -1.30 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.16 -1.43 8.29 37.16 0.31 -1.12 16 6 C 0.13 1.61 0.50 -90.62 -0.05 1.57 16 7 C -0.14 -1.84 8.27 37.16 0.31 -1.53 16 8 O -0.55 -7.48 12.30 -35.23 -0.43 -7.91 16 9 C 0.12 1.84 3.52 -4.04 -0.01 1.83 16 10 N -0.73 -15.00 5.35 -60.39 -0.32 -15.32 16 11 C 0.41 10.28 7.65 -155.33 -1.19 9.09 16 12 C -0.37 -8.68 9.34 -38.86 -0.36 -9.04 16 13 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 14 C -0.32 -8.22 9.83 -38.65 -0.38 -8.60 16 15 C 0.29 8.34 6.54 -85.00 -0.56 7.78 16 16 C -0.44 -12.05 9.13 -37.74 -0.34 -12.39 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 18 C 0.07 1.87 5.49 -17.34 -0.10 1.77 16 19 N -0.71 -19.43 11.49 55.55 0.64 -18.79 16 20 Si 0.90 19.10 29.56 -169.99 -5.03 14.07 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 N -0.53 -15.04 7.92 -10.33 -0.08 -15.13 16 25 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.64 6.17 -51.93 -0.32 0.32 16 29 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 30 H 0.06 0.48 6.78 -51.93 -0.35 0.13 16 31 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 32 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 34 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.37 4.15 7.33 45.56 0.33 4.49 16 37 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 38 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 39 H 0.40 8.50 7.11 -40.82 -0.29 8.21 16 40 H 0.09 1.82 6.68 -52.49 -0.35 1.47 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -30.54 336.82 -8.77 -39.31 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.91 Total: 13.88 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.71 Total: -15.18 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.23 Total: -49.24 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.43 Total: -7.91 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.54 -8.77 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.497 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds