Wall clock time and date at job start Tue Mar 31 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.52999 * 109.47317 * 294.99414 * 3 2 1 6 6 C 1.53006 * 109.47127 * 174.99904 * 3 2 1 7 7 C 1.52999 * 109.46626 * 299.99539 * 6 3 2 8 8 O 1.42895 * 109.47000 * 59.99605 * 6 3 2 9 9 C 1.52997 * 109.47127 * 180.02562 * 6 3 2 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 6 3 11 11 C 1.38823 * 120.00383 * 179.97438 * 10 9 6 12 12 C 1.39795 * 119.58148 * 0.02562 * 11 10 9 13 13 C 1.38593 * 119.49007 * 180.02562 * 12 11 10 14 14 C 1.38388 * 118.68424 * 359.97438 * 13 12 11 15 15 C 1.40566 * 119.14601 * 0.02562 * 14 13 12 16 16 C 1.41318 * 119.78336 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99882 * 0.02562 * 16 15 14 18 18 C 1.40020 * 119.99724 * 179.97438 * 16 15 14 19 19 N 1.30747 * 120.00153 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46691 * 60.00423 * 20 18 16 22 22 H 1.48496 * 109.47121 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47165 * 300.00800 * 20 18 16 24 24 N 1.31953 * 119.58695 * 179.73008 * 11 10 9 25 25 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 29 29 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 5 3 2 31 31 H 1.09002 * 109.46716 * 60.00091 * 5 3 2 32 32 H 1.09000 * 109.47486 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 7 6 3 34 34 H 1.09002 * 109.46719 * 180.02562 * 7 6 3 35 35 H 1.08993 * 109.47839 * 299.99931 * 7 6 3 36 36 H 0.96696 * 113.99976 * 60.00990 * 8 6 3 37 37 H 1.09001 * 109.47289 * 299.99953 * 9 6 3 38 38 H 1.09004 * 109.47261 * 59.99697 * 9 6 3 39 39 H 0.97006 * 119.99755 * 359.97438 * 10 9 6 40 40 H 1.07995 * 120.25913 * 359.97438 * 12 11 10 41 41 H 1.08000 * 120.66603 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.43313 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99716 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 6 3.9695 0.7604 1.4332 8 8 4.1346 0.7376 -0.9778 9 6 4.0748 2.8869 0.1264 10 7 5.5347 2.8887 0.2474 11 6 6.2279 4.0913 0.2696 12 6 5.5240 5.2954 0.1765 13 6 6.2180 6.4949 0.1984 14 6 7.5967 6.4625 0.3131 15 6 8.2473 5.2197 0.4030 16 6 9.6547 5.1710 0.5200 17 1 10.2269 6.0868 0.5406 18 6 10.3073 3.9354 0.6104 19 7 9.6145 2.8269 0.5860 20 14 12.1677 3.8709 0.7658 21 1 12.5867 4.5888 1.9964 22 1 12.6092 2.4552 0.8435 23 1 12.7862 4.5176 -0.4193 24 7 7.5424 4.0835 0.3843 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3970 32 1 1.9990 3.1540 -1.3076 33 1 3.6062 -0.2673 1.4332 34 1 5.0558 0.7621 1.5230 35 1 3.5349 1.2994 2.2749 36 1 3.9192 1.1165 -1.8409 37 1 3.7864 3.3746 -0.8048 38 1 3.6401 3.4256 0.9684 39 1 6.0171 2.0496 0.3120 40 1 4.4477 5.2911 0.0874 41 1 5.6933 7.4362 0.1281 42 1 8.1657 7.3803 0.3325 43 1 10.0667 1.9710 0.6489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:32 Heat of formation + Delta-G solvation = -49.189035 kcal Electronic energy + Delta-G solvation = -22033.880392 eV Core-core repulsion = 18884.536237 eV Total energy + Delta-G solvation = -3149.344155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69279 -39.78117 -36.42525 -35.54846 -34.97496 -32.54345 -32.05438 -30.44732 -30.34450 -27.30336 -26.83624 -25.34065 -23.40857 -22.74168 -21.77563 -20.61442 -19.27224 -18.22248 -17.68728 -16.66996 -16.48495 -16.18612 -15.98223 -15.71149 -15.47901 -15.03432 -14.59008 -14.50102 -14.34946 -13.80060 -13.63701 -13.34720 -13.28441 -12.98346 -12.82851 -12.73678 -12.64214 -12.60614 -12.51310 -12.36394 -12.23452 -11.89347 -11.74888 -11.49579 -11.28442 -11.12111 -10.65968 -10.64161 -9.82739 -9.42622 -8.26118 -8.21383 -6.47660 1.07815 1.35625 1.41097 1.53476 1.59693 2.25329 2.62396 2.93548 3.37768 3.66861 3.78843 3.87047 4.04914 4.12328 4.31530 4.38290 4.52580 4.58126 4.60642 4.70781 4.75696 4.77888 4.84697 4.91458 4.94653 5.01125 5.02111 5.07602 5.13398 5.17587 5.19436 5.22769 5.34698 5.39174 5.53917 5.57212 5.72573 5.97065 6.08419 6.23186 6.57628 6.78952 6.85089 6.97420 7.23689 8.36320 8.52469 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.004060 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.470285 B = 6894.777460 C = 7705.479850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.105 4.105 4 H 0.085 0.915 5 C -0.158 4.158 6 C 0.135 3.865 7 C -0.141 4.141 8 O -0.565 6.565 9 C 0.114 3.886 10 N -0.725 5.725 11 C 0.394 3.606 12 C -0.368 4.368 13 C -0.029 4.029 14 C -0.346 4.346 15 C 0.259 3.741 16 C -0.473 4.473 17 H 0.086 0.914 18 C 0.025 3.975 19 N -0.752 5.752 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.269 1.269 23 H -0.259 1.259 24 N -0.567 5.567 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.382 0.618 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.392 0.608 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -5.753 -1.365 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.124 4.124 4 H 0.103 0.897 5 C -0.215 4.215 6 C 0.094 3.906 7 C -0.198 4.198 8 O -0.373 6.373 9 C -0.011 4.011 10 N -0.361 5.361 11 C 0.153 3.847 12 C -0.394 4.394 13 C -0.054 4.054 14 C -0.369 4.369 15 C 0.132 3.868 16 C -0.505 4.505 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.374 5.374 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.184 1.184 24 N -0.290 5.290 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.227 0.773 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.929 -7.059 -0.834 16.535 hybrid contribution 0.474 0.970 -0.380 1.145 sum -14.455 -6.089 -1.214 15.732 Atomic orbital electron populations 1.21815 0.94884 1.01902 1.02188 1.21501 0.96251 0.95064 1.02258 1.21682 0.92751 0.97983 1.00003 0.89659 1.22000 1.02743 1.00268 0.96461 1.21384 0.92711 0.88700 0.87763 1.21799 1.01251 1.01741 0.95048 1.86540 1.76927 1.56602 1.17186 1.22044 0.79855 0.97991 1.01186 1.44232 1.05385 1.04570 1.81903 1.19019 0.89757 0.86565 0.89399 1.20929 0.99093 0.92052 1.27298 1.21002 0.93441 0.97410 0.93504 1.21692 0.95394 0.97589 1.22214 1.18684 0.94020 0.86820 0.87295 1.19915 0.91149 0.94398 1.45010 0.89545 1.26974 1.05442 0.94581 0.92652 1.70261 1.38726 0.98692 1.29709 0.85216 0.75820 0.78356 0.79956 1.18355 1.19371 1.18375 1.68190 1.04229 1.30105 1.26498 0.92474 0.92513 0.92078 0.92136 0.92003 0.92140 0.90628 0.92572 0.90494 0.94076 0.90307 0.76907 0.92016 0.92232 0.77308 0.86465 0.85282 0.87997 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 71.98 0.70 -1.29 16 2 C -0.11 -1.87 4.97 30.59 0.15 -1.71 16 3 C -0.11 -1.87 1.81 -10.79 -0.02 -1.88 16 4 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.16 -2.47 8.29 71.98 0.60 -1.88 16 6 C 0.14 3.26 0.48 -10.79 -0.01 3.26 16 7 C -0.14 -3.58 8.32 71.98 0.60 -2.98 16 8 O -0.56 -14.93 12.11 -148.98 -1.80 -16.74 16 9 C 0.11 3.42 3.64 86.38 0.31 3.73 16 10 N -0.73 -29.91 5.31 -344.99 -1.83 -31.74 16 11 C 0.39 19.82 7.65 133.42 1.02 20.84 16 12 C -0.37 -16.87 9.34 22.73 0.21 -16.66 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.35 -18.12 9.83 22.87 0.22 -17.90 16 15 C 0.26 15.21 6.55 40.18 0.26 15.47 16 16 C -0.47 -26.97 9.14 23.46 0.21 -26.75 16 17 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 18 C 0.03 1.34 5.50 85.29 0.47 1.81 16 19 N -0.75 -42.12 11.46 21.84 0.25 -41.87 16 20 Si 0.99 39.71 29.56 68.60 2.03 41.74 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 N -0.57 -33.06 7.89 -186.58 -1.47 -34.54 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.74 6.57 -2.39 -0.02 0.72 16 28 H 0.06 1.09 7.83 -2.39 -0.02 1.07 16 29 H 0.06 1.07 6.17 -2.39 -0.01 1.05 16 30 H 0.06 0.90 6.78 -2.39 -0.02 0.89 16 31 H 0.07 0.98 6.57 -2.39 -0.02 0.97 16 32 H 0.06 0.96 6.43 -2.39 -0.02 0.94 16 33 H 0.08 1.72 6.32 -2.39 -0.02 1.71 16 34 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.38 8.25 7.33 -74.06 -0.54 7.71 16 37 H 0.06 1.77 6.21 -2.39 -0.01 1.76 16 38 H 0.06 1.76 7.92 -2.38 -0.02 1.74 16 39 H 0.39 17.23 7.31 -92.70 -0.68 16.55 16 40 H 0.12 4.58 6.68 -2.91 -0.02 4.56 16 41 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 42 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -67.34 336.77 1.94 -65.41 By element: Atomic # 1 Polarization: 45.01 SS G_CDS: -0.20 Total: 44.81 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.96 Total: -27.07 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.05 Total: -108.14 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.80 Total: -16.74 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -67.34 1.94 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.219 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds