Wall clock time and date at job start Tue Mar 31 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47036 * 10.26080 * 3 2 1 5 5 C 1.46499 * 120.00229 * 269.99741 * 4 3 2 6 6 C 1.52997 * 109.47247 * 90.00234 * 5 4 3 7 7 C 1.53003 * 117.49791 * 243.62551 * 6 5 4 8 8 C 1.52998 * 59.99897 * 252.50864 * 7 6 5 9 9 C 1.34782 * 120.00342 * 90.00070 * 4 3 2 10 10 O 1.21582 * 120.00240 * 179.97438 * 9 4 3 11 11 N 1.34779 * 119.99442 * 359.97438 * 9 4 3 12 12 C 1.46502 * 119.99726 * 180.02562 * 11 9 4 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47353 * 300.00363 * 13 12 11 15 15 C 1.53001 * 109.46916 * 59.99955 * 13 12 11 16 16 C 1.50695 * 109.47090 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00197 * 0.02562 * 16 13 12 18 18 C 1.37886 * 119.99878 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99850 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99730 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47528 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46812 * 120.00224 * 20 18 16 23 23 H 1.48493 * 109.47291 * 240.00096 * 20 18 16 24 24 H 4.40633 * 5.51415 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47510 * 210.00347 * 5 4 3 28 28 H 1.09003 * 109.47245 * 330.00119 * 5 4 3 29 29 H 1.09001 * 115.55223 * 29.32849 * 6 5 4 30 30 H 1.08993 * 117.50005 * 0.02562 * 7 6 5 31 31 H 1.09005 * 117.49719 * 145.01700 * 7 6 5 32 32 H 1.09003 * 117.49961 * 252.51479 * 8 7 6 33 33 H 1.08996 * 117.49863 * 107.48888 * 8 7 6 34 34 H 0.97001 * 119.99999 * 0.02562 * 11 9 4 35 35 H 1.09000 * 109.47166 * 300.00164 * 12 11 9 36 36 H 1.09004 * 109.47230 * 60.00115 * 12 11 9 37 37 H 1.09000 * 109.47468 * 59.99658 * 14 13 12 38 38 H 1.09001 * 109.47197 * 180.02562 * 14 13 12 39 39 H 1.09004 * 109.46980 * 299.99607 * 14 13 12 40 40 H 1.09008 * 109.47164 * 60.00384 * 15 13 12 41 41 H 1.08999 * 109.47261 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47465 * 300.00249 * 15 13 12 43 43 H 0.97008 * 119.99687 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3582 -0.2460 5 6 3.3795 -2.2637 0.8793 6 6 2.1049 -3.0527 1.1855 7 6 1.4494 -2.8339 2.5506 8 6 2.1882 -4.1412 2.2575 9 6 3.3597 -1.7755 -1.5078 10 8 3.7659 -2.9031 -1.7119 11 7 3.1343 -0.9426 -2.5431 12 6 3.3781 -1.3963 -3.9146 13 6 3.0451 -0.2672 -4.8921 14 6 1.5739 0.1234 -4.7380 15 6 3.9288 0.9450 -4.5911 16 6 3.2965 -0.7337 -6.3028 17 1 3.6573 -1.7354 -6.4842 18 6 3.0660 0.1184 -7.3620 19 7 2.6271 1.3383 -7.1411 20 14 3.3783 -0.4596 -9.1107 21 1 3.8660 -1.8621 -9.0889 22 1 2.1156 -0.3871 -9.8889 23 1 4.4010 0.4107 -9.7445 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 4.1818 -2.9551 0.6217 28 1 3.6674 -1.6839 1.7563 29 1 1.4481 -3.2335 0.3347 30 1 1.9259 -2.1276 3.2303 31 1 0.3610 -2.8705 2.5979 32 1 1.5859 -5.0380 2.1119 33 1 3.1511 -4.2953 2.7445 34 1 2.8105 -0.0428 -2.3802 35 1 4.4262 -1.6749 -4.0242 36 1 2.7482 -2.2596 -4.1292 37 1 1.3924 0.4609 -3.7176 38 1 1.3366 0.9274 -5.4347 39 1 0.9443 -0.7402 -4.9524 40 1 4.9770 0.6668 -4.7009 41 1 3.6919 1.7492 -5.2877 42 1 3.7474 1.2825 -3.5707 43 1 2.4646 1.9376 -7.8864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324699951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:34 Heat of formation + Delta-G solvation = 52.379158 kcal Electronic energy + Delta-G solvation = -22172.094488 eV Core-core repulsion = 19027.154661 eV Total energy + Delta-G solvation = -3144.939827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.02891 -37.61796 -36.34102 -35.53063 -33.19410 -32.58315 -30.80532 -28.11470 -26.50120 -25.69951 -25.39401 -24.25301 -22.47949 -21.07060 -19.78632 -18.83838 -18.58638 -17.64265 -16.47386 -15.83457 -15.53166 -15.09244 -14.72648 -14.18143 -13.98348 -13.87554 -13.65966 -13.27832 -12.83187 -12.73766 -12.54038 -12.11609 -11.74984 -11.62193 -11.35744 -11.18862 -10.86400 -10.73946 -10.63973 -10.43897 -10.36121 -10.27259 -10.17424 -9.95179 -9.66135 -9.60573 -9.27761 -8.82638 -8.75801 -8.39632 -8.16437 -6.00164 -4.09802 2.44481 2.84510 3.28676 3.29470 3.37310 3.42688 3.58222 3.76352 4.30555 4.37304 4.45661 4.72424 4.83595 4.92051 5.05122 5.22273 5.26752 5.37007 5.50947 5.56885 5.72875 5.77758 5.92256 5.98833 6.15337 6.22361 6.39409 6.52828 6.61117 6.81979 6.85392 6.94088 7.05776 7.11874 7.22926 7.40852 7.58414 7.62290 7.72039 8.03433 8.14646 8.38335 8.43768 8.90085 9.02843 9.55847 11.01309 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029032 B = 0.004025 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.213246 B = 6955.217458 C = 7374.138309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.207 4.207 3 C 0.221 3.779 4 N -0.628 5.628 5 C 0.166 3.834 6 C -0.159 4.159 7 C -0.180 4.180 8 C -0.177 4.177 9 C 0.701 3.299 10 O -0.591 6.591 11 N -0.731 5.731 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.214 0.786 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.004 0.996 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -1.184 17.840 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.098 3.902 4 N -0.365 5.365 5 C 0.043 3.957 6 C -0.179 4.179 7 C -0.217 4.217 8 C -0.214 4.214 9 C 0.403 3.597 10 O -0.470 6.470 11 N -0.386 5.386 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.187 4.187 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.231 0.769 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.230 0.770 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.782 -1.859 17.521 17.709 hybrid contribution -0.460 0.188 -0.868 1.000 sum -2.241 -1.671 16.653 16.886 Atomic orbital electron populations 1.24877 0.95891 0.98794 1.00562 1.23579 0.94988 1.01425 1.00827 1.18316 0.83868 0.84646 1.03365 1.47131 1.70440 1.13511 1.05400 1.20859 0.95658 0.91854 0.87378 1.22777 1.00367 1.01717 0.93035 1.22995 0.99590 0.99918 0.99174 1.22907 1.02245 0.93040 1.03247 1.16017 0.78778 0.84726 0.80221 1.90884 1.53310 1.19033 1.83727 1.45667 1.70198 1.16272 1.06493 1.21601 0.99755 0.98545 0.77514 1.18368 0.92714 0.90557 0.92885 1.21800 0.97658 1.01581 0.97550 1.21815 0.98132 1.01439 0.97274 1.21028 1.44146 0.99275 0.89783 0.92349 1.24879 0.94841 0.94854 0.98955 1.69818 1.45759 1.06050 1.30851 0.86520 0.77799 0.78939 0.84659 1.19742 1.21103 1.21080 0.76878 0.88444 0.88112 0.89143 0.90709 0.87798 0.89005 0.89266 0.88967 0.88757 0.77005 0.92868 0.93004 0.97633 0.89679 0.95541 0.95400 0.89613 0.97741 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.21 -2.58 13.68 -37.12 -0.51 -3.09 16 3 C 0.22 2.51 5.69 -6.83 -0.04 2.47 16 4 N -0.63 -8.78 2.43 -182.78 -0.44 -9.23 16 5 C 0.17 1.99 5.73 -4.04 -0.02 1.96 16 6 C -0.16 -1.89 6.01 -90.62 -0.54 -2.43 16 7 C -0.18 -1.69 10.18 -26.73 -0.27 -1.96 16 8 C -0.18 -1.72 10.25 -26.73 -0.27 -2.00 16 9 C 0.70 12.96 8.27 -86.91 -0.72 12.24 16 10 O -0.59 -13.04 15.92 5.29 0.08 -12.96 16 11 N -0.73 -13.72 4.82 -65.22 -0.31 -14.03 16 12 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.50 -13.32 8.01 -34.44 -0.28 -13.59 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H 0.21 1.85 7.80 -54.10 -0.42 1.42 16 25 H 0.10 1.09 6.36 -51.93 -0.33 0.76 16 26 H 0.10 0.83 7.89 -51.93 -0.41 0.42 16 27 H 0.09 1.22 7.42 -51.93 -0.39 0.83 16 28 H 0.07 0.67 7.63 -51.93 -0.40 0.28 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.39 6.79 3.89 -40.82 -0.16 6.64 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.09 2.14 6.07 -51.93 -0.31 1.83 16 42 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 43 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -29.91 352.86 -8.32 -38.23 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.79 Total: 7.15 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.67 Total: -7.13 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.24 Total: -46.43 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.91 -8.32 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324699951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.608 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds