Wall clock time and date at job start Tue Mar 31 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47036 * 10.26080 * 3 2 1 5 5 C 1.46499 * 120.00229 * 269.99741 * 4 3 2 6 6 C 1.52997 * 109.47247 * 90.00234 * 5 4 3 7 7 C 1.53003 * 117.49791 * 243.62551 * 6 5 4 8 8 C 1.52998 * 59.99897 * 252.50864 * 7 6 5 9 9 C 1.34782 * 120.00342 * 90.00070 * 4 3 2 10 10 O 1.21582 * 120.00240 * 179.97438 * 9 4 3 11 11 N 1.34779 * 119.99442 * 359.97438 * 9 4 3 12 12 C 1.46502 * 119.99726 * 180.02562 * 11 9 4 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47353 * 300.00363 * 13 12 11 15 15 C 1.53001 * 109.46916 * 59.99955 * 13 12 11 16 16 C 1.50695 * 109.47090 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00197 * 0.02562 * 16 13 12 18 18 C 1.37886 * 119.99878 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99850 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99730 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47528 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46812 * 120.00224 * 20 18 16 23 23 H 1.48493 * 109.47291 * 240.00096 * 20 18 16 24 24 H 4.40633 * 5.51415 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47510 * 210.00347 * 5 4 3 28 28 H 1.09003 * 109.47245 * 330.00119 * 5 4 3 29 29 H 1.09001 * 115.55223 * 29.32849 * 6 5 4 30 30 H 1.08993 * 117.50005 * 0.02562 * 7 6 5 31 31 H 1.09005 * 117.49719 * 145.01700 * 7 6 5 32 32 H 1.09003 * 117.49961 * 252.51479 * 8 7 6 33 33 H 1.08996 * 117.49863 * 107.48888 * 8 7 6 34 34 H 0.97001 * 119.99999 * 0.02562 * 11 9 4 35 35 H 1.09000 * 109.47166 * 300.00164 * 12 11 9 36 36 H 1.09004 * 109.47230 * 60.00115 * 12 11 9 37 37 H 1.09000 * 109.47468 * 59.99658 * 14 13 12 38 38 H 1.09001 * 109.47197 * 180.02562 * 14 13 12 39 39 H 1.09004 * 109.46980 * 299.99607 * 14 13 12 40 40 H 1.09008 * 109.47164 * 60.00384 * 15 13 12 41 41 H 1.08999 * 109.47261 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47465 * 300.00249 * 15 13 12 43 43 H 0.97008 * 119.99687 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3582 -0.2460 5 6 3.3795 -2.2637 0.8793 6 6 2.1049 -3.0527 1.1855 7 6 1.4494 -2.8339 2.5506 8 6 2.1882 -4.1412 2.2575 9 6 3.3597 -1.7755 -1.5078 10 8 3.7659 -2.9031 -1.7119 11 7 3.1343 -0.9426 -2.5431 12 6 3.3781 -1.3963 -3.9146 13 6 3.0451 -0.2672 -4.8921 14 6 1.5739 0.1234 -4.7380 15 6 3.9288 0.9450 -4.5911 16 6 3.2965 -0.7337 -6.3028 17 1 3.6573 -1.7354 -6.4842 18 6 3.0660 0.1184 -7.3620 19 7 2.6271 1.3383 -7.1411 20 14 3.3783 -0.4596 -9.1107 21 1 3.8660 -1.8621 -9.0889 22 1 2.1156 -0.3871 -9.8889 23 1 4.4010 0.4107 -9.7445 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 4.1818 -2.9551 0.6217 28 1 3.6674 -1.6839 1.7563 29 1 1.4481 -3.2335 0.3347 30 1 1.9259 -2.1276 3.2303 31 1 0.3610 -2.8705 2.5979 32 1 1.5859 -5.0380 2.1119 33 1 3.1511 -4.2953 2.7445 34 1 2.8105 -0.0428 -2.3802 35 1 4.4262 -1.6749 -4.0242 36 1 2.7482 -2.2596 -4.1292 37 1 1.3924 0.4609 -3.7176 38 1 1.3366 0.9274 -5.4347 39 1 0.9443 -0.7402 -4.9524 40 1 4.9770 0.6668 -4.7009 41 1 3.6919 1.7492 -5.2877 42 1 3.7474 1.2825 -3.5707 43 1 2.4646 1.9376 -7.8864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324699951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:32 Heat of formation + Delta-G solvation = 36.899114 kcal Electronic energy + Delta-G solvation = -22172.765753 eV Core-core repulsion = 19027.154661 eV Total energy + Delta-G solvation = -3145.611092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.38818 -38.78007 -37.93384 -36.68345 -34.93479 -33.56330 -32.65816 -29.09247 -27.83458 -27.57681 -27.29946 -25.83290 -23.21952 -22.15665 -21.04482 -20.63310 -19.75432 -18.78915 -17.82862 -17.55561 -16.73532 -16.62008 -16.25936 -15.44066 -15.29060 -15.09900 -14.85712 -14.67730 -14.38298 -14.21606 -13.98025 -13.46841 -13.22061 -13.11072 -12.73424 -12.61415 -12.56407 -12.33405 -12.26047 -12.13806 -11.73681 -11.49606 -11.32758 -11.29286 -11.19624 -10.99233 -10.74584 -10.70498 -10.40306 -10.18266 -9.61338 -8.02073 -6.17595 1.37190 1.41916 1.46171 1.55869 1.94325 2.13798 2.18864 2.47093 2.94333 3.10557 3.21590 3.52524 3.86923 4.02106 4.08582 4.18546 4.34297 4.41401 4.51873 4.53242 4.67367 4.71721 4.77611 4.81145 4.98212 5.03201 5.04158 5.09230 5.10371 5.18692 5.22698 5.27469 5.37182 5.56747 5.62257 5.66093 5.67735 5.90181 6.13534 6.21057 6.43626 6.72858 6.86284 6.98770 7.50022 7.57456 8.97256 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029032 B = 0.004025 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.213246 B = 6955.217458 C = 7374.138309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.232 4.232 3 C 0.216 3.784 4 N -0.617 5.617 5 C 0.164 3.836 6 C -0.181 4.181 7 C -0.159 4.159 8 C -0.173 4.173 9 C 0.698 3.302 10 O -0.634 6.634 11 N -0.726 5.726 12 C 0.166 3.834 13 C 0.052 3.948 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.528 4.528 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.280 1.280 24 H 0.236 0.764 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.402 0.598 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -0.282 19.888 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.234 4.234 3 C 0.094 3.906 4 N -0.352 5.352 5 C 0.042 3.958 6 C -0.201 4.201 7 C -0.195 4.195 8 C -0.210 4.210 9 C 0.399 3.601 10 O -0.515 6.515 11 N -0.382 5.382 12 C 0.042 3.958 13 C 0.051 3.949 14 C -0.173 4.173 15 C -0.176 4.176 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.206 1.206 24 H 0.253 0.747 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.241 0.759 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.022 -0.921 19.618 19.743 hybrid contribution -0.441 -0.109 -1.443 1.513 sum -2.463 -1.030 18.175 18.370 Atomic orbital electron populations 1.25603 0.96849 0.97804 0.99968 1.23911 0.95660 1.02278 1.01514 1.18647 0.83549 0.82836 1.05585 1.47134 1.69153 1.14923 1.04033 1.21058 0.95160 0.91880 0.87714 1.22572 1.00343 1.04107 0.93093 1.23066 0.99751 0.99690 0.97028 1.23013 1.03148 0.93045 1.01828 1.16190 0.78444 0.83983 0.81464 1.90851 1.55146 1.20827 1.84707 1.45379 1.70598 1.16762 1.05463 1.21142 0.98279 0.97289 0.79105 1.18362 0.93217 0.91271 0.92041 1.21621 0.97019 1.00251 0.98418 1.21643 0.97375 1.00094 0.98438 1.21280 1.44720 0.98916 0.91730 0.93763 1.25444 0.94738 0.95046 1.01831 1.69912 1.45758 1.06446 1.31620 0.85693 0.77698 0.78286 0.81045 1.20074 1.20749 1.20574 0.74708 0.88303 0.84116 0.91148 0.86700 0.91512 0.86811 0.89176 0.89158 0.87206 0.75944 0.94337 0.95090 0.95145 0.91734 0.96662 0.96075 0.91766 0.94760 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 19.25 74.32 1.43 -2.48 16 2 C -0.23 -5.27 13.68 31.13 0.43 -4.84 16 3 C 0.22 4.30 5.69 84.58 0.48 4.78 16 4 N -0.62 -16.38 2.43 -850.45 -2.07 -18.45 16 5 C 0.16 3.65 5.73 86.38 0.50 4.14 16 6 C -0.18 -4.09 6.01 -10.79 -0.06 -4.16 16 7 C -0.16 -2.53 10.18 30.59 0.31 -2.22 16 8 C -0.17 -3.05 10.25 30.59 0.31 -2.74 16 9 C 0.70 25.74 8.27 179.05 1.48 27.22 16 10 O -0.63 -28.68 15.92 -3.97 -0.06 -28.74 16 11 N -0.73 -27.01 4.82 -478.52 -2.31 -29.32 16 12 C 0.17 7.46 4.50 86.38 0.39 7.84 16 13 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 14 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 15 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 16 C -0.53 -28.39 8.01 25.60 0.21 -28.19 16 17 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 18 C 0.03 1.55 5.15 84.66 0.44 1.98 16 19 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 20 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H 0.24 3.51 7.80 -4.43 -0.03 3.47 16 25 H 0.10 1.95 6.36 -2.39 -0.02 1.94 16 26 H 0.14 1.69 7.89 -2.39 -0.02 1.67 16 27 H 0.07 1.85 7.42 -2.39 -0.02 1.83 16 28 H 0.12 1.61 7.63 -2.39 -0.02 1.59 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 1.35 8.03 -2.39 -0.02 1.33 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.40 13.33 3.89 -92.71 -0.36 12.97 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 38 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 39 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 42 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 43 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 Total: -1.00 -65.86 352.86 5.45 -60.41 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.63 Total: 24.63 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 7.04 Total: -5.64 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.18 Total: -95.65 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.06 Total: -28.74 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -65.86 5.45 -60.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324699951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.310 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds