Wall clock time and date at job start Tue Mar 31 2020 00:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47512 * 2 1 4 4 C 1.52995 * 109.47396 * 185.19597 * 3 2 1 5 5 H 1.08999 * 109.47457 * 55.04963 * 4 3 2 6 6 C 1.53004 * 109.47035 * 295.05424 * 4 3 2 7 7 C 1.53004 * 109.46789 * 303.83826 * 6 4 3 8 8 O 1.42904 * 109.46897 * 184.02321 * 7 6 4 9 9 C 1.53001 * 109.47389 * 175.05695 * 4 3 2 10 10 N 1.46500 * 109.47293 * 184.99581 * 9 4 3 11 11 C 1.38822 * 120.00135 * 179.97438 * 10 9 4 12 12 C 1.39804 * 119.58209 * 0.02562 * 11 10 9 13 13 C 1.38594 * 119.48780 * 179.97438 * 12 11 10 14 14 C 1.38389 * 118.68196 * 0.25712 * 13 12 11 15 15 C 1.40553 * 119.14892 * 359.48133 * 14 13 12 16 16 C 1.41316 * 119.78564 * 180.25494 * 15 14 13 17 17 H 1.08004 * 119.99605 * 0.26593 * 16 15 14 18 18 C 1.40018 * 120.00053 * 180.27078 * 16 15 14 19 19 N 1.30746 * 120.00291 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47129 * 60.00050 * 20 18 16 22 22 H 1.48494 * 109.47308 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46682 * 300.00055 * 20 18 16 24 24 N 1.31948 * 119.58747 * 179.97438 * 11 10 9 25 25 H 1.09007 * 109.46711 * 300.00191 * 1 2 3 26 26 H 1.08997 * 109.47460 * 59.99995 * 1 2 3 27 27 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47169 * 240.00081 * 2 1 3 29 29 H 1.09003 * 109.47687 * 120.00386 * 2 1 3 30 30 H 1.08994 * 109.47270 * 65.18926 * 3 2 1 31 31 H 1.09002 * 109.46547 * 305.19030 * 3 2 1 32 32 H 1.08995 * 109.47227 * 63.83193 * 6 4 3 33 33 H 1.08997 * 109.47198 * 183.84017 * 6 4 3 34 34 H 1.09001 * 109.46952 * 304.02276 * 7 6 4 35 35 H 1.09000 * 109.47186 * 64.02361 * 7 6 4 36 36 H 0.96698 * 113.99528 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47319 * 64.99536 * 9 4 3 38 38 H 1.08996 * 109.46614 * 304.99647 * 9 4 3 39 39 H 0.96997 * 119.99686 * 0.02562 * 10 9 4 40 40 H 1.08005 * 120.25540 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.65671 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.42392 * 179.74682 * 14 13 12 43 43 H 0.97001 * 119.99816 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1306 5 1 3.8538 0.8819 -1.0183 6 6 4.1833 0.7950 1.1088 7 6 3.7003 1.5266 2.3628 8 8 4.3502 0.9810 3.5126 9 6 4.0639 2.8853 -0.2546 10 7 5.5083 2.8821 -0.4990 11 6 6.1898 4.0824 -0.6477 12 6 5.4891 5.2891 -0.5621 13 6 6.1715 6.4863 -0.7103 14 6 7.5347 6.4490 -0.9456 15 6 8.1836 5.2042 -1.0155 16 6 9.5762 5.1506 -1.2498 17 1 10.1390 6.0645 -1.3701 18 6 10.2262 3.9128 -1.3259 19 7 9.5447 2.8065 -1.1809 20 14 12.0669 3.8420 -1.6363 21 1 12.7804 4.5555 -0.5468 22 1 12.5087 2.4248 -1.6728 23 1 12.3748 4.4897 -2.9367 24 7 7.4909 4.0700 -0.8671 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7546 1.9288 0.9328 31 1 1.6028 1.9824 -0.8399 32 1 3.8817 -0.2512 1.1598 33 1 5.2698 0.8575 1.0476 34 1 3.9389 2.5869 2.2794 35 1 2.6218 1.4036 2.4625 36 1 4.0915 1.3984 4.3456 37 1 3.8529 3.4238 0.6694 38 1 3.5559 3.3756 -1.0850 39 1 5.9884 2.0413 -0.5576 40 1 4.4242 5.2884 -0.3818 41 1 5.6489 7.4294 -0.6481 42 1 8.0935 7.3648 -1.0695 43 1 9.9952 1.9490 -1.2333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:39 Heat of formation + Delta-G solvation = -37.441203 kcal Electronic energy + Delta-G solvation = -21640.589786 eV Core-core repulsion = 18491.755056 eV Total energy + Delta-G solvation = -3148.834730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.83143 -37.85963 -36.14666 -34.64751 -33.29763 -32.04718 -30.31572 -28.97580 -27.95686 -25.56476 -25.18939 -23.83042 -21.80977 -21.36556 -20.25654 -19.10152 -17.62112 -17.29159 -16.34358 -15.61855 -15.30427 -14.82926 -14.73641 -14.41340 -14.06990 -13.68821 -13.53449 -13.39739 -13.05601 -12.71372 -12.61666 -12.04404 -11.95988 -11.85137 -11.69571 -11.45545 -11.19648 -11.02115 -10.97148 -10.69006 -10.63033 -10.49650 -10.38962 -10.24453 -9.88563 -9.80209 -9.41194 -8.82271 -7.86326 -7.45975 -6.45349 -6.28082 -4.43284 2.93048 3.13245 3.15820 3.28161 3.34612 4.01821 4.12330 4.32289 4.74327 4.77235 4.88298 4.90307 5.02317 5.14570 5.27290 5.38408 5.49860 5.54441 5.64267 5.67726 5.70164 5.84188 5.90028 5.99352 6.06435 6.12354 6.17102 6.18967 6.24443 6.37004 6.39223 6.61809 6.90478 6.93599 6.99429 7.29751 7.64185 7.65096 7.85865 7.96329 8.20922 8.41888 8.73815 8.85035 9.17038 10.29664 10.45252 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.003975 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.765611 B = 7041.862333 C = 7539.217284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.095 4.095 5 H 0.082 0.918 6 C -0.115 4.115 7 C 0.072 3.928 8 O -0.575 6.575 9 C 0.143 3.857 10 N -0.737 5.737 11 C 0.412 3.588 12 C -0.368 4.368 13 C -0.032 4.032 14 C -0.318 4.318 15 C 0.293 3.707 16 C -0.435 4.435 17 H 0.082 0.918 18 C 0.072 3.928 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.532 5.532 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.375 0.625 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 -5.685 3.936 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.114 4.114 5 H 0.100 0.900 6 C -0.152 4.152 7 C -0.005 4.005 8 O -0.380 6.380 9 C 0.018 3.982 10 N -0.374 5.374 11 C 0.172 3.828 12 C -0.394 4.394 13 C -0.057 4.057 14 C -0.341 4.341 15 C 0.166 3.834 16 C -0.467 4.467 17 H 0.100 0.900 18 C -0.154 4.154 19 N -0.337 5.337 20 Si 0.729 3.271 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.253 5.253 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.222 0.778 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.923 -6.991 3.448 15.092 hybrid contribution 0.194 0.904 0.300 0.972 sum -12.729 -6.087 3.748 14.599 Atomic orbital electron populations 1.21776 0.96087 1.01385 1.01701 1.21564 0.95534 0.96925 1.02271 1.21664 0.94313 0.97033 1.02394 1.21372 0.95144 0.96543 0.98365 0.90010 1.21500 1.02122 0.99358 0.92231 1.22365 0.94994 0.97326 0.85797 1.86484 1.70242 1.64139 1.17162 1.21146 0.82280 0.94963 0.99849 1.44144 1.05687 1.06071 1.81506 1.18527 0.90045 0.84541 0.89692 1.20595 0.98334 0.92579 1.27921 1.20585 0.94148 0.95689 0.95239 1.21524 0.94620 0.98032 1.19938 1.18188 0.92921 0.85648 0.86655 1.19539 0.91775 0.93261 1.42169 0.89996 1.26041 0.99980 0.95560 0.93772 1.70144 1.36291 0.98046 1.29225 0.86444 0.82786 0.77971 0.79874 1.19038 1.20363 1.19052 1.68215 1.03106 1.29678 1.24336 0.92911 0.92772 0.92966 0.91923 0.91795 0.91599 0.91567 0.91427 0.90448 0.93059 0.93835 0.77840 0.93094 0.93140 0.77000 0.89342 0.89051 0.88788 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.81 16 2 C -0.13 -1.10 5.56 -26.73 -0.15 -1.25 16 3 C -0.12 -1.13 4.38 -26.73 -0.12 -1.25 16 4 C -0.10 -1.15 2.20 -90.62 -0.20 -1.35 16 5 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.11 -1.48 4.94 -26.73 -0.13 -1.61 16 7 C 0.07 0.89 6.30 37.16 0.23 1.13 16 8 O -0.58 -7.61 13.66 -35.23 -0.48 -8.09 16 9 C 0.14 2.21 4.13 -4.04 -0.02 2.19 16 10 N -0.74 -14.87 5.41 -60.39 -0.33 -15.20 16 11 C 0.41 10.24 7.65 -155.33 -1.19 9.05 16 12 C -0.37 -8.65 9.34 -38.86 -0.36 -9.02 16 13 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 14 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 15 C 0.29 8.33 6.55 -85.00 -0.56 7.77 16 16 C -0.44 -12.03 9.14 -37.75 -0.34 -12.37 16 17 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 18 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16 19 N -0.72 -19.38 11.46 55.55 0.64 -18.74 16 20 Si 0.90 19.08 29.56 -169.99 -5.02 14.05 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 N -0.53 -14.99 7.89 -10.33 -0.08 -15.07 16 25 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 30 H 0.07 0.61 6.17 -51.93 -0.32 0.29 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.81 6.87 -51.93 -0.36 0.45 16 33 H 0.08 1.21 7.10 -51.93 -0.37 0.84 16 34 H 0.05 0.69 6.24 -51.93 -0.32 0.36 16 35 H 0.04 0.44 6.49 -51.93 -0.34 0.11 16 36 H 0.38 3.21 9.12 45.56 0.42 3.62 16 37 H 0.05 0.79 6.00 -51.93 -0.31 0.48 16 38 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.39 8.06 7.77 -40.82 -0.32 7.75 16 40 H 0.09 1.84 6.68 -52.48 -0.35 1.49 16 41 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -31.42 343.24 -9.41 -40.83 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.97 Total: 12.55 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.34 Total: -15.52 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.23 Total: -49.01 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.48 Total: -8.09 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.42 -9.41 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.394 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds