Wall clock time and date at job start Tue Mar 31 2020 00:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47512 * 2 1 4 4 C 1.52995 * 109.47396 * 185.19597 * 3 2 1 5 5 H 1.08999 * 109.47457 * 55.04963 * 4 3 2 6 6 C 1.53004 * 109.47035 * 295.05424 * 4 3 2 7 7 C 1.53004 * 109.46789 * 303.83826 * 6 4 3 8 8 O 1.42904 * 109.46897 * 184.02321 * 7 6 4 9 9 C 1.53001 * 109.47389 * 175.05695 * 4 3 2 10 10 N 1.46500 * 109.47293 * 184.99581 * 9 4 3 11 11 C 1.38822 * 120.00135 * 179.97438 * 10 9 4 12 12 C 1.39804 * 119.58209 * 0.02562 * 11 10 9 13 13 C 1.38594 * 119.48780 * 179.97438 * 12 11 10 14 14 C 1.38389 * 118.68196 * 0.25712 * 13 12 11 15 15 C 1.40553 * 119.14892 * 359.48133 * 14 13 12 16 16 C 1.41316 * 119.78564 * 180.25494 * 15 14 13 17 17 H 1.08004 * 119.99605 * 0.26593 * 16 15 14 18 18 C 1.40018 * 120.00053 * 180.27078 * 16 15 14 19 19 N 1.30746 * 120.00291 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47129 * 60.00050 * 20 18 16 22 22 H 1.48494 * 109.47308 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46682 * 300.00055 * 20 18 16 24 24 N 1.31948 * 119.58747 * 179.97438 * 11 10 9 25 25 H 1.09007 * 109.46711 * 300.00191 * 1 2 3 26 26 H 1.08997 * 109.47460 * 59.99995 * 1 2 3 27 27 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47169 * 240.00081 * 2 1 3 29 29 H 1.09003 * 109.47687 * 120.00386 * 2 1 3 30 30 H 1.08994 * 109.47270 * 65.18926 * 3 2 1 31 31 H 1.09002 * 109.46547 * 305.19030 * 3 2 1 32 32 H 1.08995 * 109.47227 * 63.83193 * 6 4 3 33 33 H 1.08997 * 109.47198 * 183.84017 * 6 4 3 34 34 H 1.09001 * 109.46952 * 304.02276 * 7 6 4 35 35 H 1.09000 * 109.47186 * 64.02361 * 7 6 4 36 36 H 0.96698 * 113.99528 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47319 * 64.99536 * 9 4 3 38 38 H 1.08996 * 109.46614 * 304.99647 * 9 4 3 39 39 H 0.96997 * 119.99686 * 0.02562 * 10 9 4 40 40 H 1.08005 * 120.25540 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.65671 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.42392 * 179.74682 * 14 13 12 43 43 H 0.97001 * 119.99816 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1306 5 1 3.8538 0.8819 -1.0183 6 6 4.1833 0.7950 1.1088 7 6 3.7003 1.5266 2.3628 8 8 4.3502 0.9810 3.5126 9 6 4.0639 2.8853 -0.2546 10 7 5.5083 2.8821 -0.4990 11 6 6.1898 4.0824 -0.6477 12 6 5.4891 5.2891 -0.5621 13 6 6.1715 6.4863 -0.7103 14 6 7.5347 6.4490 -0.9456 15 6 8.1836 5.2042 -1.0155 16 6 9.5762 5.1506 -1.2498 17 1 10.1390 6.0645 -1.3701 18 6 10.2262 3.9128 -1.3259 19 7 9.5447 2.8065 -1.1809 20 14 12.0669 3.8420 -1.6363 21 1 12.7804 4.5555 -0.5468 22 1 12.5087 2.4248 -1.6728 23 1 12.3748 4.4897 -2.9367 24 7 7.4909 4.0700 -0.8671 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7546 1.9288 0.9328 31 1 1.6028 1.9824 -0.8399 32 1 3.8817 -0.2512 1.1598 33 1 5.2698 0.8575 1.0476 34 1 3.9389 2.5869 2.2794 35 1 2.6218 1.4036 2.4625 36 1 4.0915 1.3984 4.3456 37 1 3.8529 3.4238 0.6694 38 1 3.5559 3.3756 -1.0850 39 1 5.9884 2.0413 -0.5576 40 1 4.4242 5.2884 -0.3818 41 1 5.6489 7.4294 -0.6481 42 1 8.0935 7.3648 -1.0695 43 1 9.9952 1.9490 -1.2333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:38 Heat of formation + Delta-G solvation = -57.761844 kcal Electronic energy + Delta-G solvation = -21641.470955 eV Core-core repulsion = 18491.755056 eV Total energy + Delta-G solvation = -3149.715900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30776 -39.32513 -37.21484 -36.09574 -35.02136 -33.21026 -32.22537 -30.68378 -29.02590 -27.32062 -26.51893 -24.89999 -23.32949 -22.78576 -21.84863 -20.16798 -19.21981 -18.61204 -18.01701 -16.78624 -16.53605 -16.40970 -16.26451 -15.92201 -15.24549 -15.08463 -14.82461 -14.71601 -14.30002 -14.10081 -13.97995 -13.60362 -13.20536 -12.94848 -12.82166 -12.73513 -12.66375 -12.60953 -12.32119 -12.18415 -11.92101 -11.77528 -11.50178 -11.38954 -11.30023 -11.20099 -10.80019 -10.57890 -9.82303 -9.43262 -8.26602 -8.21892 -6.47648 1.07765 1.35644 1.40920 1.53169 1.59598 2.25141 2.68007 2.93454 3.34018 3.74239 3.84492 3.98773 4.07817 4.22054 4.33761 4.36215 4.39447 4.43797 4.55393 4.63040 4.73696 4.75367 4.78593 4.87604 4.96859 5.01040 5.01776 5.08100 5.12607 5.17075 5.18321 5.24406 5.35602 5.42057 5.46158 5.54746 5.72662 5.97280 6.08708 6.23043 6.58084 6.84284 6.87935 6.96195 7.23189 8.35946 8.52180 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.003975 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.765611 B = 7041.862333 C = 7539.217284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.082 4.082 5 H 0.078 0.922 6 C -0.113 4.113 7 C 0.074 3.926 8 O -0.598 6.598 9 C 0.141 3.859 10 N -0.732 5.732 11 C 0.394 3.606 12 C -0.368 4.368 13 C -0.030 4.030 14 C -0.346 4.346 15 C 0.259 3.741 16 C -0.473 4.473 17 H 0.086 0.914 18 C 0.025 3.975 19 N -0.752 5.752 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.259 1.259 24 N -0.567 5.567 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.390 0.610 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 -5.869 4.209 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.101 4.101 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.003 4.003 8 O -0.406 6.406 9 C 0.017 3.983 10 N -0.367 5.367 11 C 0.153 3.847 12 C -0.393 4.393 13 C -0.054 4.054 14 C -0.369 4.369 15 C 0.132 3.868 16 C -0.505 4.505 17 H 0.104 0.896 18 C -0.196 4.196 19 N -0.374 5.374 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.183 1.183 24 N -0.290 5.290 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.406 -7.175 3.741 16.523 hybrid contribution 0.483 0.954 0.265 1.102 sum -13.923 -6.221 4.006 15.767 Atomic orbital electron populations 1.21761 0.95032 1.01933 1.02082 1.21540 0.96409 0.96026 1.02139 1.21632 0.91899 0.98017 1.03173 1.21275 0.96906 0.94077 0.97857 0.90335 1.21468 0.99984 1.00360 0.93203 1.22365 0.96449 0.96177 0.85275 1.86436 1.70966 1.64789 1.18419 1.21409 0.79456 0.97441 1.00040 1.44356 1.07418 1.04527 1.80392 1.19009 0.89733 0.86632 0.89353 1.20950 0.99753 0.92041 1.26582 1.21007 0.93467 0.97445 0.93464 1.21689 0.95990 0.97583 1.21636 1.18678 0.93888 0.86841 0.87422 1.19913 0.92307 0.94385 1.43893 0.89571 1.26966 1.05170 0.94597 0.92881 1.70253 1.38541 0.98697 1.29939 0.85219 0.75913 0.78362 0.79875 1.18420 1.19343 1.18340 1.68188 1.04804 1.30214 1.25810 0.92375 0.92562 0.92407 0.92172 0.91913 0.90660 0.90935 0.90327 0.93881 0.94430 0.90973 0.75653 0.92642 0.92657 0.77539 0.86376 0.85274 0.88008 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.87 5.56 30.59 0.17 -1.70 16 3 C -0.11 -1.85 4.38 30.59 0.13 -1.71 16 4 C -0.08 -1.88 2.20 -10.79 -0.02 -1.91 16 5 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 6 C -0.11 -2.83 4.94 30.60 0.15 -2.68 16 7 C 0.07 1.72 6.30 71.98 0.45 2.18 16 8 O -0.60 -15.17 13.66 -148.98 -2.04 -17.20 16 9 C 0.14 4.17 4.13 86.38 0.36 4.53 16 10 N -0.73 -29.82 5.41 -344.98 -1.87 -31.69 16 11 C 0.39 19.80 7.65 133.42 1.02 20.82 16 12 C -0.37 -16.89 9.34 22.73 0.21 -16.68 16 13 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 14 C -0.35 -18.16 9.83 22.87 0.22 -17.93 16 15 C 0.26 15.21 6.55 40.18 0.26 15.47 16 16 C -0.47 -27.00 9.14 23.46 0.21 -26.78 16 17 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 18 C 0.03 1.36 5.50 85.29 0.47 1.83 16 19 N -0.75 -42.01 11.46 21.84 0.25 -41.76 16 20 Si 0.99 39.71 29.56 68.60 2.03 41.74 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 N -0.57 -33.01 7.89 -186.59 -1.47 -34.48 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.06 0.98 6.91 -2.39 -0.02 0.96 16 30 H 0.07 1.15 6.17 -2.39 -0.01 1.14 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.80 6.87 -2.39 -0.02 1.78 16 33 H 0.04 1.38 7.10 -2.39 -0.02 1.36 16 34 H 0.04 0.97 6.24 -2.39 -0.01 0.95 16 35 H 0.07 1.26 6.49 -2.39 -0.02 1.25 16 36 H 0.39 6.20 9.12 -74.06 -0.68 5.53 16 37 H 0.06 1.62 6.00 -2.39 -0.01 1.61 16 38 H 0.06 1.61 7.92 -2.39 -0.02 1.59 16 39 H 0.39 16.49 7.77 -92.71 -0.72 15.77 16 40 H 0.12 4.63 6.68 -2.91 -0.02 4.61 16 41 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.28 13.97 8.29 -92.71 -0.77 13.20 16 Total: -1.00 -69.71 343.24 1.11 -68.59 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.38 Total: 41.72 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.59 Total: -26.93 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -3.09 Total: -107.93 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -2.04 Total: -17.20 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -69.71 1.11 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.832 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds