Wall clock time and date at job start Tue Mar 31 2020 00:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47383 * 2 1 4 4 C 1.53001 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46832 * 304.99905 * 4 3 2 6 6 C 1.52999 * 109.47407 * 64.99591 * 4 3 2 7 7 C 1.53005 * 109.46825 * 59.62022 * 6 4 3 8 8 O 1.42899 * 109.47041 * 180.67641 * 7 6 4 9 9 C 1.53001 * 109.47051 * 185.00200 * 4 3 2 10 10 N 1.46503 * 109.47133 * 175.21792 * 9 4 3 11 11 C 1.38815 * 119.99778 * 175.05148 * 10 9 4 12 12 C 1.39800 * 119.58788 * 359.72113 * 11 10 9 13 13 C 1.38593 * 119.49057 * 179.79384 * 12 11 10 14 14 C 1.38390 * 118.68186 * 0.47529 * 13 12 11 15 15 C 1.40554 * 119.14741 * 359.75100 * 14 13 12 16 16 C 1.41315 * 119.78100 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00199 * 7.39304 * 16 15 14 18 18 C 1.40026 * 119.99778 * 187.39442 * 16 15 14 19 19 N 1.30741 * 120.00157 * 7.35649 * 18 16 15 20 20 Si 1.86801 * 119.99876 * 187.35537 * 18 16 15 21 21 H 1.48497 * 109.47366 * 94.98920 * 20 18 16 22 22 H 1.48496 * 109.46982 * 214.98918 * 20 18 16 23 23 H 1.48502 * 109.47001 * 334.98807 * 20 18 16 24 24 N 1.31954 * 119.58677 * 179.97438 * 11 10 9 25 25 H 1.08996 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47092 * 299.99958 * 1 2 3 27 27 H 1.08999 * 109.46722 * 59.99968 * 1 2 3 28 28 H 1.09000 * 109.47092 * 240.00042 * 2 1 3 29 29 H 1.08998 * 109.47455 * 120.00136 * 2 1 3 30 30 H 1.09000 * 109.46972 * 59.99968 * 3 2 1 31 31 H 1.09001 * 109.46754 * 299.99967 * 3 2 1 32 32 H 1.08999 * 109.47098 * 179.61568 * 6 4 3 33 33 H 1.08997 * 109.47362 * 299.62422 * 6 4 3 34 34 H 1.08998 * 109.47070 * 300.67288 * 7 6 4 35 35 H 1.08996 * 109.47085 * 60.67275 * 7 6 4 36 36 H 0.96693 * 114.00065 * 180.02562 * 8 7 6 37 37 H 1.09009 * 109.46612 * 295.21573 * 9 4 3 38 38 H 1.09000 * 109.47120 * 55.21333 * 9 4 3 39 39 H 0.96997 * 119.99589 * 355.04605 * 10 9 4 40 40 H 1.07997 * 120.25453 * 359.97438 * 12 11 10 41 41 H 1.08009 * 120.65731 * 180.22476 * 13 12 11 42 42 H 1.08001 * 120.42666 * 179.76836 * 14 13 12 43 43 H 0.96998 * 120.00370 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0796 0.8330 -1.3082 7 6 3.5613 1.6550 -2.4900 8 8 4.0241 1.0766 -3.7120 9 6 4.0801 2.8795 0.1251 10 7 5.5407 2.8710 0.2394 11 6 6.2420 4.0687 0.2617 12 6 5.5464 5.2778 0.1687 13 6 6.2483 6.4726 0.1955 14 6 7.6273 6.4305 0.3044 15 6 8.2695 5.1831 0.3893 16 6 9.6771 5.1245 0.5003 17 1 10.2461 6.0319 0.6398 18 6 10.3342 3.8900 0.4294 19 7 9.6656 2.8105 0.1179 20 14 12.1660 3.7855 0.7799 21 1 12.3776 3.4160 2.2025 22 1 12.7794 2.7549 -0.0957 23 1 12.7973 5.1026 0.5113 24 7 7.5574 4.0516 0.3653 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1695 0.8392 -1.3115 33 1 3.7217 -0.1930 -1.3946 34 1 2.4713 1.6587 -2.4798 35 1 3.9289 2.6780 -2.4101 36 1 3.7333 1.5474 -4.5049 37 1 3.7880 3.4473 -0.7584 38 1 3.6488 3.3417 1.0131 39 1 6.0175 2.0285 0.2995 40 1 4.4701 5.2809 0.0797 41 1 5.7297 7.4176 0.1287 42 1 8.2025 7.3443 0.3241 43 1 10.1208 1.9554 0.0684 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:41 Heat of formation + Delta-G solvation = -58.578890 kcal Electronic energy + Delta-G solvation = -21671.743425 eV Core-core repulsion = 18521.992095 eV Total energy + Delta-G solvation = -3149.751329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31669 -39.32186 -37.21727 -36.09763 -35.02466 -33.21147 -32.23660 -30.68130 -29.04232 -27.32144 -26.51717 -24.90222 -23.34064 -22.79053 -21.85421 -20.16705 -19.22617 -18.61236 -17.99411 -16.79255 -16.59121 -16.43455 -16.20822 -15.94044 -15.26484 -15.08711 -14.84366 -14.69140 -14.33994 -14.09152 -13.96808 -13.60611 -13.22387 -12.95547 -12.88594 -12.72732 -12.64670 -12.56965 -12.32876 -12.18877 -11.94428 -11.76772 -11.50537 -11.39941 -11.26597 -11.19875 -10.77528 -10.58520 -9.84090 -9.42312 -8.34613 -8.20537 -6.46489 1.06392 1.35168 1.40834 1.54901 1.58118 2.24843 2.67363 2.92155 3.33478 3.73872 3.84857 3.97757 4.07230 4.21803 4.35347 4.35809 4.39479 4.44265 4.55128 4.60771 4.74514 4.75685 4.78442 4.88656 4.96500 5.00988 5.01911 5.07149 5.12993 5.16912 5.18965 5.23890 5.35241 5.41596 5.46436 5.55370 5.72596 5.97109 6.08464 6.23670 6.57849 6.84211 6.86746 6.95767 7.22573 8.34507 8.51275 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.003996 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.181764 B = 7005.489988 C = 7484.298232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.082 4.082 5 H 0.080 0.920 6 C -0.112 4.112 7 C 0.074 3.926 8 O -0.597 6.597 9 C 0.140 3.860 10 N -0.731 5.731 11 C 0.395 3.605 12 C -0.366 4.366 13 C -0.029 4.029 14 C -0.346 4.346 15 C 0.262 3.738 16 C -0.475 4.475 17 H 0.086 0.914 18 C 0.029 3.971 19 N -0.756 5.756 20 Si 0.986 3.014 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.255 1.255 24 N -0.571 5.571 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.394 0.606 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.390 0.610 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -5.648 -2.157 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.101 4.101 5 H 0.098 0.902 6 C -0.149 4.149 7 C -0.003 4.003 8 O -0.405 6.405 9 C 0.016 3.984 10 N -0.367 5.367 11 C 0.154 3.846 12 C -0.392 4.392 13 C -0.053 4.053 14 C -0.369 4.369 15 C 0.135 3.865 16 C -0.507 4.507 17 H 0.104 0.896 18 C -0.193 4.193 19 N -0.378 5.378 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.179 1.179 24 N -0.294 5.294 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.243 0.757 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.224 0.776 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.701 -6.985 -1.759 16.371 hybrid contribution 0.502 0.964 -0.292 1.125 sum -14.200 -6.021 -2.051 15.559 Atomic orbital electron populations 1.21757 0.95033 1.01929 1.02072 1.21552 0.96427 0.96074 1.02143 1.21631 0.91868 0.97998 1.03198 1.21268 0.97224 0.94336 0.97289 0.90208 1.21466 1.00141 1.00135 0.93199 1.22355 0.98388 0.95554 0.83962 1.86424 1.78857 1.58147 1.17099 1.21422 0.78943 0.97461 1.00576 1.44337 1.05646 1.04516 1.82152 1.18970 0.89565 0.86662 0.89436 1.20941 0.99211 0.91990 1.27051 1.21014 0.93386 0.97487 0.93459 1.21696 0.95436 0.97599 1.22206 1.18649 0.93998 0.86806 0.87025 1.19915 0.91097 0.94843 1.44873 0.89608 1.26938 1.05151 0.94597 0.92591 1.70183 1.38732 0.99769 1.29147 0.85153 0.75933 0.79376 0.78915 1.19022 1.19293 1.17859 1.68097 1.04077 1.30545 1.26643 0.92419 0.92472 0.92468 0.92006 0.92052 0.90822 0.90767 0.93939 0.90234 0.90985 0.94784 0.75680 0.92444 0.92707 0.77565 0.86332 0.85261 0.88031 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.90 5.69 30.59 0.17 -1.72 16 3 C -0.11 -1.84 4.46 30.60 0.14 -1.70 16 4 C -0.08 -1.87 2.19 -10.79 -0.02 -1.90 16 5 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 6 C -0.11 -2.85 4.98 30.60 0.15 -2.70 16 7 C 0.07 1.80 6.36 71.98 0.46 2.25 16 8 O -0.60 -15.52 13.66 -148.98 -2.03 -17.55 16 9 C 0.14 4.11 4.11 86.38 0.36 4.47 16 10 N -0.73 -29.55 5.38 -344.97 -1.85 -31.40 16 11 C 0.39 19.73 7.65 133.42 1.02 20.75 16 12 C -0.37 -16.73 9.32 22.73 0.21 -16.51 16 13 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 14 C -0.35 -18.15 9.83 22.87 0.22 -17.92 16 15 C 0.26 15.38 6.52 40.18 0.26 15.64 16 16 C -0.48 -27.11 9.13 23.46 0.21 -26.89 16 17 H 0.09 4.60 7.86 -2.91 -0.02 4.58 16 18 C 0.03 1.54 5.47 85.29 0.47 2.00 16 19 N -0.76 -42.23 11.57 21.84 0.25 -41.98 16 20 Si 0.99 39.74 29.57 68.60 2.03 41.77 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 N -0.57 -33.08 8.00 -186.60 -1.49 -34.57 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.00 6.57 -2.39 -0.02 0.98 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.15 6.15 -2.39 -0.01 1.14 16 32 H 0.04 1.37 7.27 -2.39 -0.02 1.35 16 33 H 0.08 1.84 6.58 -2.39 -0.02 1.83 16 34 H 0.07 1.32 6.28 -2.39 -0.01 1.31 16 35 H 0.03 0.94 6.37 -2.39 -0.02 0.92 16 36 H 0.39 6.50 9.12 -74.06 -0.68 5.83 16 37 H 0.06 1.68 5.71 -2.38 -0.01 1.66 16 38 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 39 H 0.39 16.32 7.93 -92.71 -0.74 15.58 16 40 H 0.12 4.61 6.67 -2.91 -0.02 4.59 16 41 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 43 H 0.28 13.99 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -69.58 343.14 1.10 -68.48 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.39 Total: 41.84 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.59 Total: -26.58 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.09 Total: -107.96 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -2.03 Total: -17.55 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -69.58 1.10 -68.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.904 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds