Wall clock time and date at job start Tue Mar 31 2020 00:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 H 1.08998 * 109.46800 * 55.00283 * 3 2 1 5 5 C 1.52994 * 109.46916 * 294.99980 * 3 2 1 6 6 C 1.53003 * 109.47312 * 174.99873 * 3 2 1 7 7 C 1.53001 * 109.46942 * 294.00305 * 6 3 2 8 8 H 1.09000 * 109.47053 * 56.97642 * 7 6 3 9 9 C 1.53001 * 109.46629 * 176.97364 * 7 6 3 10 10 O 1.42903 * 109.47157 * 54.99885 * 9 7 6 11 11 N 1.46496 * 109.47270 * 296.97029 * 7 6 3 12 12 C 1.38816 * 120.00216 * 154.99872 * 11 7 6 13 13 C 1.39805 * 119.58228 * 0.02562 * 12 11 7 14 14 C 1.38601 * 119.48967 * 179.97438 * 13 12 11 15 15 C 1.38386 * 118.67986 * 0.25796 * 14 13 12 16 16 C 1.40556 * 119.15101 * 359.47821 * 15 14 13 17 17 C 1.41318 * 119.78800 * 180.25527 * 16 15 14 18 18 H 1.08001 * 119.99761 * 354.21086 * 17 16 15 19 19 C 1.40023 * 120.00416 * 174.21595 * 17 16 15 20 20 N 1.30744 * 119.99903 * 6.03309 * 19 17 16 21 21 Si 1.86794 * 119.99950 * 186.03724 * 19 17 16 22 22 H 1.48506 * 109.46971 * 94.98803 * 21 19 17 23 23 H 1.48500 * 109.47212 * 214.98261 * 21 19 17 24 24 H 1.48491 * 109.47474 * 334.98518 * 21 19 17 25 25 N 1.31955 * 119.58663 * 179.97438 * 12 11 7 26 26 H 1.09002 * 109.47256 * 60.00244 * 1 2 3 27 27 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47412 * 299.99710 * 1 2 3 29 29 H 1.09000 * 109.47381 * 239.99771 * 2 1 3 30 30 H 1.09008 * 109.47179 * 120.00189 * 2 1 3 31 31 H 1.09002 * 109.47118 * 66.05188 * 5 3 2 32 32 H 1.09006 * 109.46950 * 186.04870 * 5 3 2 33 33 H 1.09000 * 109.47753 * 306.04985 * 5 3 2 34 34 H 1.08991 * 109.46968 * 173.99870 * 6 3 2 35 35 H 1.09005 * 109.46926 * 54.00278 * 6 3 2 36 36 H 1.09003 * 109.46799 * 174.99532 * 9 7 6 37 37 H 1.09004 * 109.47660 * 294.99773 * 9 7 6 38 38 H 0.96705 * 113.99550 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00166 * 335.00825 * 11 7 6 40 40 H 1.07996 * 120.25306 * 0.02562 * 13 12 11 41 41 H 1.07991 * 120.65760 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.42439 * 179.74830 * 15 14 13 43 43 H 0.96998 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 3.9641 0.8967 1.4975 8 1 3.5464 -0.1019 1.6256 9 6 5.4894 0.8279 1.5948 10 8 6.0433 2.1144 1.3115 11 7 3.4473 1.7804 2.5454 12 6 3.2105 1.2821 3.8192 13 6 3.4686 -0.0644 4.0926 14 6 3.2320 -0.5598 5.3652 15 6 2.7386 0.2995 6.3313 16 6 2.5045 1.6443 5.9963 17 6 2.0060 2.5348 6.9738 18 1 1.7179 2.1632 7.9460 19 6 1.8854 3.8990 6.6818 20 7 2.1211 4.3317 5.4708 21 14 1.3878 5.1006 8.0227 22 1 2.6049 5.6998 8.6269 23 1 0.5459 6.1747 7.4373 24 1 0.6173 4.3829 9.0696 25 7 2.7454 2.0855 4.7570 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.5501 2.2214 -1.3469 32 1 2.0886 3.1166 -1.3548 33 1 1.9786 1.5288 -2.1517 34 1 3.9369 2.4632 0.0189 35 1 3.9946 0.8168 -0.6551 36 1 5.7758 0.5226 2.6012 37 1 5.8673 0.1029 0.8738 38 1 7.0089 2.1452 1.3555 39 1 3.2705 2.7137 2.3492 40 1 3.8504 -0.7134 3.3183 41 1 3.4244 -1.5968 5.5970 42 1 2.5402 -0.0576 7.3310 43 1 2.0380 5.2767 5.2686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325977121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:40 Heat of formation + Delta-G solvation = -34.041566 kcal Electronic energy + Delta-G solvation = -22322.881665 eV Core-core repulsion = 19174.194354 eV Total energy + Delta-G solvation = -3148.687311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.83281 -37.51871 -36.18713 -34.41112 -33.17167 -31.01251 -30.23086 -29.37346 -27.69368 -26.18552 -25.27365 -23.33122 -21.67803 -21.20973 -20.19023 -19.26896 -17.48144 -17.07744 -16.17027 -15.25009 -15.04042 -14.74214 -14.48923 -14.26456 -13.94265 -13.76834 -13.47413 -13.02471 -12.84243 -12.39943 -12.21319 -12.02609 -11.94820 -11.81433 -11.51410 -11.32828 -11.18360 -10.95119 -10.94379 -10.57919 -10.42158 -10.37395 -10.22416 -10.06390 -9.85248 -9.67661 -9.40966 -8.81102 -7.85903 -7.43481 -6.40877 -6.27846 -4.42247 2.91591 3.14355 3.17819 3.29359 3.34579 4.02449 4.24371 4.59732 4.87202 4.92117 4.98081 5.07678 5.33384 5.52263 5.56927 5.62160 5.67601 5.71136 5.78289 5.93153 5.94459 6.04077 6.07845 6.10678 6.18185 6.23532 6.27728 6.31579 6.46204 6.55443 6.66093 6.67650 6.91542 6.94792 7.02764 7.31105 7.65760 7.83983 7.87697 7.98885 8.23690 8.45263 8.78927 8.86606 9.19665 10.31111 10.46664 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.005151 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.594838 B = 5434.463951 C = 5696.914696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.095 4.095 4 H 0.080 0.920 5 C -0.145 4.145 6 C -0.113 4.113 7 C 0.167 3.833 8 H 0.088 0.912 9 C 0.058 3.942 10 O -0.563 6.563 11 N -0.721 5.721 12 C 0.416 3.584 13 C -0.372 4.372 14 C -0.032 4.032 15 C -0.319 4.319 16 C 0.294 3.706 17 C -0.436 4.436 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.713 5.713 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.262 1.262 25 N -0.532 5.532 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.370 0.630 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -4.399 -11.290 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.202 4.202 6 C -0.151 4.151 7 C 0.059 3.941 8 H 0.106 0.894 9 C -0.022 4.022 10 O -0.367 6.367 11 N -0.356 5.356 12 C 0.176 3.824 13 C -0.398 4.398 14 C -0.056 4.056 15 C -0.342 4.342 16 C 0.167 3.833 17 C -0.468 4.468 18 H 0.100 0.900 19 C -0.153 4.153 20 N -0.335 5.335 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.253 5.253 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.215 0.785 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.668 -3.364 -11.748 12.334 hybrid contribution 0.623 -0.290 0.830 1.077 sum 2.291 -3.654 -10.918 11.739 Atomic orbital electron populations 1.21788 0.96201 1.01110 1.01799 1.21601 0.95822 0.96623 1.01559 1.21182 0.95350 0.96308 0.98464 0.90151 1.21853 1.01029 1.00181 0.97134 1.21767 0.95335 1.02403 0.95621 1.20823 0.90189 0.95406 0.87682 0.89416 1.22868 0.95841 0.84425 0.99064 1.86519 1.24636 1.31929 1.93649 1.44099 1.72666 1.11825 1.07005 1.18549 0.89362 0.88467 0.86058 1.20595 1.25393 0.95710 0.98115 1.20573 0.95144 0.96828 0.93061 1.21514 1.17384 0.96290 0.99061 1.18202 0.87303 0.89150 0.88693 1.19572 1.36753 0.91583 0.98900 0.89990 1.26036 0.94078 0.99433 0.95792 1.70157 1.29553 1.14971 1.18824 0.86388 0.79195 0.80037 0.81587 1.19625 1.20273 1.18611 1.68236 1.22493 1.34126 1.00465 0.92981 0.93277 0.92508 0.92678 0.91609 0.92822 0.92901 0.93234 0.90779 0.91648 0.93068 0.94262 0.78500 0.76829 0.89428 0.89158 0.88883 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.12 -1.51 5.28 -26.73 -0.14 -1.65 16 3 C -0.09 -1.27 2.32 -90.62 -0.21 -1.48 16 4 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 5 C -0.14 -1.66 8.79 37.15 0.33 -1.34 16 6 C -0.11 -1.52 3.98 -26.73 -0.11 -1.63 16 7 C 0.17 2.63 1.92 -67.93 -0.13 2.50 16 8 H 0.09 1.40 4.66 -51.93 -0.24 1.16 16 9 C 0.06 0.84 6.76 37.16 0.25 1.09 16 10 O -0.56 -8.28 12.79 -35.23 -0.45 -8.73 16 11 N -0.72 -14.58 4.46 -53.91 -0.24 -14.82 16 12 C 0.42 10.14 7.63 -155.33 -1.18 8.96 16 13 C -0.37 -8.53 8.84 -38.86 -0.34 -8.87 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 16 C 0.29 8.29 6.54 -85.00 -0.56 7.74 16 17 C -0.44 -12.02 9.13 -37.74 -0.34 -12.36 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.87 5.49 -17.35 -0.10 1.78 16 20 N -0.71 -19.33 11.48 55.55 0.64 -18.69 16 21 Si 0.90 19.10 29.56 -169.99 -5.03 14.07 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 25 N -0.53 -14.84 7.91 -10.32 -0.08 -14.92 16 26 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.94 6.33 -51.92 -0.33 0.61 16 31 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.37 3.79 9.12 45.56 0.42 4.21 16 39 H 0.40 8.46 8.68 -40.82 -0.35 8.11 16 40 H 0.09 1.77 6.15 -52.49 -0.32 1.45 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -30.43 344.51 -9.00 -39.43 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.08 Total: 14.98 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.96 Total: -16.50 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.32 Total: -48.43 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.45 Total: -8.73 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.43 -9.00 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.389 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds