Wall clock time and date at job start Tue Mar 31 2020 00:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 H 1.08998 * 109.46800 * 55.00283 * 3 2 1 5 5 C 1.52994 * 109.46916 * 294.99980 * 3 2 1 6 6 C 1.53003 * 109.47312 * 174.99873 * 3 2 1 7 7 C 1.53001 * 109.46942 * 294.00305 * 6 3 2 8 8 H 1.09000 * 109.47053 * 56.97642 * 7 6 3 9 9 C 1.53001 * 109.46629 * 176.97364 * 7 6 3 10 10 O 1.42903 * 109.47157 * 54.99885 * 9 7 6 11 11 N 1.46496 * 109.47270 * 296.97029 * 7 6 3 12 12 C 1.38816 * 120.00216 * 154.99872 * 11 7 6 13 13 C 1.39805 * 119.58228 * 0.02562 * 12 11 7 14 14 C 1.38601 * 119.48967 * 179.97438 * 13 12 11 15 15 C 1.38386 * 118.67986 * 0.25796 * 14 13 12 16 16 C 1.40556 * 119.15101 * 359.47821 * 15 14 13 17 17 C 1.41318 * 119.78800 * 180.25527 * 16 15 14 18 18 H 1.08001 * 119.99761 * 354.21086 * 17 16 15 19 19 C 1.40023 * 120.00416 * 174.21595 * 17 16 15 20 20 N 1.30744 * 119.99903 * 6.03309 * 19 17 16 21 21 Si 1.86794 * 119.99950 * 186.03724 * 19 17 16 22 22 H 1.48506 * 109.46971 * 94.98803 * 21 19 17 23 23 H 1.48500 * 109.47212 * 214.98261 * 21 19 17 24 24 H 1.48491 * 109.47474 * 334.98518 * 21 19 17 25 25 N 1.31955 * 119.58663 * 179.97438 * 12 11 7 26 26 H 1.09002 * 109.47256 * 60.00244 * 1 2 3 27 27 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47412 * 299.99710 * 1 2 3 29 29 H 1.09000 * 109.47381 * 239.99771 * 2 1 3 30 30 H 1.09008 * 109.47179 * 120.00189 * 2 1 3 31 31 H 1.09002 * 109.47118 * 66.05188 * 5 3 2 32 32 H 1.09006 * 109.46950 * 186.04870 * 5 3 2 33 33 H 1.09000 * 109.47753 * 306.04985 * 5 3 2 34 34 H 1.08991 * 109.46968 * 173.99870 * 6 3 2 35 35 H 1.09005 * 109.46926 * 54.00278 * 6 3 2 36 36 H 1.09003 * 109.46799 * 174.99532 * 9 7 6 37 37 H 1.09004 * 109.47660 * 294.99773 * 9 7 6 38 38 H 0.96705 * 113.99550 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00166 * 335.00825 * 11 7 6 40 40 H 1.07996 * 120.25306 * 0.02562 * 13 12 11 41 41 H 1.07991 * 120.65760 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.42439 * 179.74830 * 15 14 13 43 43 H 0.96998 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 3.9641 0.8967 1.4975 8 1 3.5464 -0.1019 1.6256 9 6 5.4894 0.8279 1.5948 10 8 6.0433 2.1144 1.3115 11 7 3.4473 1.7804 2.5454 12 6 3.2105 1.2821 3.8192 13 6 3.4686 -0.0644 4.0926 14 6 3.2320 -0.5598 5.3652 15 6 2.7386 0.2995 6.3313 16 6 2.5045 1.6443 5.9963 17 6 2.0060 2.5348 6.9738 18 1 1.7179 2.1632 7.9460 19 6 1.8854 3.8990 6.6818 20 7 2.1211 4.3317 5.4708 21 14 1.3878 5.1006 8.0227 22 1 2.6049 5.6998 8.6269 23 1 0.5459 6.1747 7.4373 24 1 0.6173 4.3829 9.0696 25 7 2.7454 2.0855 4.7570 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.5501 2.2214 -1.3469 32 1 2.0886 3.1166 -1.3548 33 1 1.9786 1.5288 -2.1517 34 1 3.9369 2.4632 0.0189 35 1 3.9946 0.8168 -0.6551 36 1 5.7758 0.5226 2.6012 37 1 5.8673 0.1029 0.8738 38 1 7.0089 2.1452 1.3555 39 1 3.2705 2.7137 2.3492 40 1 3.8504 -0.7134 3.3183 41 1 3.4244 -1.5968 5.5970 42 1 2.5402 -0.0576 7.3310 43 1 2.0380 5.2767 5.2686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325977121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:39 Heat of formation + Delta-G solvation = -53.412164 kcal Electronic energy + Delta-G solvation = -22323.721637 eV Core-core repulsion = 19174.194354 eV Total energy + Delta-G solvation = -3149.527283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41178 -39.05404 -37.28326 -36.01175 -34.95369 -32.58588 -31.95552 -30.66848 -29.32255 -27.45033 -27.01172 -24.40426 -23.42901 -22.92867 -21.61122 -20.51273 -19.20167 -18.52563 -17.81258 -16.77077 -16.46520 -16.25043 -16.06251 -15.51103 -15.44518 -15.04701 -14.81689 -14.54495 -14.30757 -14.10522 -13.71426 -13.24189 -13.05531 -13.00134 -12.91089 -12.78833 -12.67498 -12.51789 -12.46885 -12.12854 -12.02010 -11.71883 -11.52429 -11.33114 -11.18247 -11.15420 -10.81765 -10.57679 -9.80879 -9.39690 -8.21406 -8.20403 -6.46114 1.08321 1.38561 1.40275 1.54510 1.58141 2.24987 2.70076 2.93874 3.50224 3.78081 3.92771 4.01029 4.09889 4.24762 4.36366 4.40882 4.52262 4.53276 4.62541 4.71069 4.73883 4.77875 4.82434 4.92528 4.94727 5.02327 5.03669 5.12756 5.16956 5.17491 5.23486 5.26130 5.35128 5.47022 5.55830 5.60818 5.75013 5.99079 6.12202 6.25064 6.62083 6.87125 6.93081 7.00371 7.27378 8.38742 8.53896 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.005151 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.594838 B = 5434.463951 C = 5696.914696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.040 0.960 5 C -0.140 4.140 6 C -0.102 4.102 7 C 0.159 3.841 8 H 0.090 0.910 9 C 0.063 3.937 10 O -0.581 6.581 11 N -0.715 5.715 12 C 0.401 3.599 13 C -0.367 4.367 14 C -0.030 4.030 15 C -0.348 4.348 16 C 0.260 3.740 17 C -0.474 4.474 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.751 5.751 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.256 1.256 25 N -0.568 5.568 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.389 0.611 39 H 0.387 0.613 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -5.303 -12.894 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.059 0.941 5 C -0.197 4.197 6 C -0.139 4.139 7 C 0.053 3.947 8 H 0.108 0.892 9 C -0.017 4.017 10 O -0.388 6.388 11 N -0.348 5.348 12 C 0.160 3.840 13 C -0.392 4.392 14 C -0.054 4.054 15 C -0.371 4.371 16 C 0.133 3.867 17 C -0.506 4.506 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.374 5.374 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.179 1.179 25 N -0.291 5.291 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.344 -4.300 -13.396 14.263 hybrid contribution 0.486 -0.105 1.186 1.286 sum 2.830 -4.405 -12.210 13.285 Atomic orbital electron populations 1.21780 0.96210 1.01649 1.01163 1.21581 0.95840 0.95981 1.01881 1.21118 0.95260 0.96639 0.98118 0.94101 1.21806 1.01156 1.00196 0.96550 1.21694 0.95270 1.02174 0.94802 1.21162 0.91282 0.94713 0.87527 0.89207 1.22767 0.94672 0.85273 0.98968 1.86474 1.26634 1.32181 1.93558 1.44288 1.72006 1.11915 1.06545 1.18981 0.88905 0.89202 0.86904 1.20936 1.24012 0.95440 0.98829 1.20992 0.93531 0.98299 0.92558 1.21662 1.19190 0.96080 1.00214 1.18672 0.88093 0.90585 0.89339 1.19914 1.38486 0.92970 0.99272 0.89756 1.26947 0.93504 1.00779 0.98308 1.70266 1.30526 1.15631 1.20942 0.85172 0.78934 0.77219 0.78176 1.19022 1.19318 1.17907 1.68198 1.24024 1.35731 1.01147 0.91507 0.92152 0.95258 0.90042 0.93388 0.92731 0.93162 0.91104 0.91906 0.88624 0.95380 0.90313 0.76256 0.77926 0.86343 0.85424 0.88260 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.67 71.98 0.70 -2.89 16 2 C -0.12 -2.73 5.28 30.59 0.16 -2.57 16 3 C -0.09 -2.39 2.32 -10.79 -0.03 -2.41 16 4 H 0.04 1.38 7.49 -2.39 -0.02 1.36 16 5 C -0.14 -2.95 8.79 71.98 0.63 -2.31 16 6 C -0.10 -2.53 3.98 30.60 0.12 -2.41 16 7 C 0.16 4.80 1.92 44.99 0.09 4.89 16 8 H 0.09 2.69 4.66 -2.39 -0.01 2.68 16 9 C 0.06 1.69 6.76 71.98 0.49 2.17 16 10 O -0.58 -16.10 12.79 -148.98 -1.90 -18.01 16 11 N -0.71 -29.38 4.46 -324.46 -1.45 -30.83 16 12 C 0.40 19.97 7.63 133.42 1.02 20.99 16 13 C -0.37 -16.56 8.84 22.74 0.20 -16.36 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 15 C -0.35 -18.31 9.83 22.87 0.22 -18.08 16 16 C 0.26 15.32 6.54 40.18 0.26 15.58 16 17 C -0.47 -27.23 9.13 23.46 0.21 -27.02 16 18 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 19 C 0.03 1.41 5.49 85.29 0.47 1.87 16 20 N -0.75 -42.28 11.48 21.84 0.25 -42.03 16 21 Si 0.98 40.08 29.56 68.60 2.03 42.11 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 N -0.57 -33.02 7.91 -186.58 -1.48 -34.50 16 26 H 0.07 1.37 6.70 -2.39 -0.02 1.35 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.30 6.33 -2.38 -0.02 1.29 16 31 H 0.05 1.13 6.87 -2.39 -0.02 1.11 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.74 7.66 -2.39 -0.02 1.72 16 35 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.03 0.89 7.75 -2.39 -0.02 0.87 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.39 7.21 9.12 -74.05 -0.68 6.53 16 39 H 0.39 17.20 8.68 -92.71 -0.80 16.40 16 40 H 0.12 4.53 6.15 -2.91 -0.02 4.51 16 41 H 0.13 4.81 8.06 -2.92 -0.02 4.78 16 42 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.27 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -69.01 344.51 1.76 -67.25 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: -0.46 Total: 45.68 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.78 Total: -29.68 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.67 Total: -107.36 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.90 Total: -18.01 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -69.01 1.76 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds