Wall clock time and date at job start Tue Mar 31 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 H 1.08994 * 109.47040 * 304.99452 * 3 2 1 5 5 C 1.53001 * 109.47212 * 65.00103 * 3 2 1 6 6 C 1.53000 * 109.46847 * 184.99753 * 3 2 1 7 7 C 1.53004 * 109.47385 * 65.94720 * 6 3 2 8 8 H 1.08998 * 109.46730 * 305.12182 * 7 6 3 9 9 C 1.52996 * 109.47116 * 185.11410 * 7 6 3 10 10 O 1.42898 * 109.47315 * 305.00191 * 9 7 6 11 11 N 1.46501 * 109.46625 * 65.11789 * 7 6 3 12 12 C 1.38824 * 119.99578 * 205.00244 * 11 7 6 13 13 C 1.39794 * 119.58562 * 0.02562 * 12 11 7 14 14 C 1.38595 * 119.48827 * 180.02562 * 13 12 11 15 15 C 1.38384 * 118.68607 * 359.97438 * 14 13 12 16 16 C 1.40554 * 119.14634 * 0.02562 * 15 14 13 17 17 C 1.41318 * 119.78387 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.40031 * 120.00102 * 180.02562 * 17 16 15 20 20 N 1.30745 * 119.99667 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00022 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47016 * 119.99957 * 21 19 17 24 24 H 1.48500 * 109.46893 * 239.99566 * 21 19 17 25 25 N 1.31959 * 119.58279 * 179.97438 * 12 11 7 26 26 H 1.09002 * 109.47676 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47586 * 300.00474 * 1 2 3 28 28 H 1.09001 * 109.47263 * 60.00032 * 1 2 3 29 29 H 1.09004 * 109.47118 * 239.99411 * 2 1 3 30 30 H 1.09000 * 109.46741 * 119.99983 * 2 1 3 31 31 H 1.08995 * 109.46956 * 294.23550 * 5 3 2 32 32 H 1.09002 * 109.47448 * 54.23499 * 5 3 2 33 33 H 1.09003 * 109.46796 * 174.23656 * 5 3 2 34 34 H 1.09000 * 109.47363 * 305.94649 * 6 3 2 35 35 H 1.09001 * 109.47250 * 185.94748 * 6 3 2 36 36 H 1.09000 * 109.47156 * 65.00298 * 9 7 6 37 37 H 1.09006 * 109.46845 * 184.99875 * 9 7 6 38 38 H 0.96708 * 113.99877 * 180.02562 * 10 9 7 39 39 H 0.97003 * 120.00326 * 25.00057 * 11 7 6 40 40 H 1.07998 * 120.25553 * 0.02562 * 13 12 11 41 41 H 1.08002 * 120.65761 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.43051 * 180.02562 * 15 14 13 43 43 H 0.96999 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 3.9642 0.8954 -1.4969 8 1 3.5158 -0.0878 -1.6393 9 6 5.4876 0.7776 -1.5750 10 8 6.0794 2.0428 -1.2732 11 7 3.4905 1.8044 -2.5435 12 6 3.2544 1.3248 -3.8247 13 6 3.4712 -0.0272 -4.1064 14 6 3.2354 -0.5038 -5.3863 15 6 2.7889 0.3805 -6.3525 16 6 2.5898 1.7283 -6.0074 17 6 2.1335 2.6428 -6.9835 18 1 1.9386 2.3052 -7.9906 19 6 1.9341 3.9869 -6.6448 20 7 2.1696 4.3955 -5.4254 21 14 1.3304 5.1955 -7.9348 22 1 1.1399 4.4872 -9.2260 23 1 0.0389 5.7829 -7.4966 24 1 2.3330 6.2773 -8.1072 25 7 2.8273 2.1507 -4.7611 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.5498 2.2169 1.3492 32 1 1.9831 1.5314 2.1517 33 1 2.0845 3.1187 1.3525 34 1 3.9945 0.8175 0.6558 35 1 3.9369 2.4633 -0.0198 36 1 5.8320 0.0346 -0.8556 37 1 5.7773 0.4714 -2.5803 38 1 7.0460 2.0424 -1.3044 39 1 3.3417 2.7414 -2.3413 40 1 3.8197 -0.6952 -3.3326 41 1 3.3970 -1.5447 -5.6248 42 1 2.5958 0.0393 -7.3589 43 1 2.0319 5.3266 -5.1908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325977123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:43 Heat of formation + Delta-G solvation = -53.360738 kcal Electronic energy + Delta-G solvation = -22313.444704 eV Core-core repulsion = 19163.919651 eV Total energy + Delta-G solvation = -3149.525053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40932 -39.05469 -37.28475 -36.01669 -34.95607 -32.58367 -31.95360 -30.67126 -29.32264 -27.44864 -27.01314 -24.41095 -23.42927 -22.92855 -21.60145 -20.52771 -19.20501 -18.52275 -17.81290 -16.77235 -16.46225 -16.25413 -16.06711 -15.51246 -15.43514 -15.05717 -14.81286 -14.54768 -14.31216 -14.09665 -13.71433 -13.23956 -13.04878 -13.01069 -12.90456 -12.78003 -12.67147 -12.51517 -12.47335 -12.14066 -12.02303 -11.70596 -11.52520 -11.34047 -11.19423 -11.15614 -10.81860 -10.57744 -9.81074 -9.40047 -8.20699 -8.20411 -6.46356 1.07829 1.38606 1.40340 1.55694 1.57424 2.24903 2.70121 2.94203 3.50148 3.77683 3.92615 4.01100 4.10266 4.24524 4.36572 4.40693 4.52164 4.53353 4.62403 4.70744 4.73717 4.77820 4.82324 4.92311 4.94735 5.02295 5.03556 5.12605 5.17025 5.17200 5.23347 5.25854 5.35130 5.46791 5.55699 5.60489 5.74931 5.99083 6.12228 6.25092 6.61958 6.87078 6.93197 7.00396 7.27426 8.38906 8.54020 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.005165 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.807024 B = 5419.337223 C = 5723.489478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.040 0.960 5 C -0.140 4.140 6 C -0.101 4.101 7 C 0.158 3.842 8 H 0.091 0.909 9 C 0.063 3.937 10 O -0.581 6.581 11 N -0.715 5.715 12 C 0.401 3.599 13 C -0.367 4.367 14 C -0.030 4.030 15 C -0.349 4.349 16 C 0.260 3.740 17 C -0.473 4.473 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.751 5.751 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.267 1.267 25 N -0.568 5.568 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.387 0.613 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -5.588 12.937 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.059 0.941 5 C -0.197 4.197 6 C -0.139 4.139 7 C 0.053 3.947 8 H 0.108 0.892 9 C -0.017 4.017 10 O -0.388 6.388 11 N -0.348 5.348 12 C 0.160 3.840 13 C -0.392 4.392 14 C -0.054 4.054 15 C -0.372 4.372 16 C 0.133 3.867 17 C -0.505 4.505 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.373 5.373 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.192 1.192 25 N -0.291 5.291 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.238 0.762 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.941 -4.569 13.437 14.325 hybrid contribution 0.425 -0.111 -1.153 1.234 sum 2.366 -4.680 12.284 13.357 Atomic orbital electron populations 1.21784 0.96181 1.01675 1.01177 1.21587 0.95861 0.95944 1.01927 1.21120 0.95248 0.96665 0.98111 0.94142 1.21806 1.01172 1.00181 0.96552 1.21689 0.95255 1.02124 0.94825 1.21173 0.91687 0.94297 0.87554 0.89179 1.22769 0.94280 0.85755 0.98876 1.86474 1.25863 1.33227 1.93286 1.44299 1.73524 1.11034 1.05933 1.18984 0.88897 0.89262 0.86863 1.20932 1.24630 0.95099 0.98584 1.20990 0.93496 0.98317 0.92567 1.21659 1.19909 0.95598 1.00004 1.18678 0.87859 0.90814 0.89383 1.19945 1.39782 0.93793 0.97003 0.89756 1.26954 0.93924 1.00730 0.97986 1.70275 1.30773 1.16474 1.19808 0.85134 0.78396 0.77388 0.78577 1.17842 1.19198 1.19207 1.68200 1.24194 1.35471 1.01185 0.92112 0.91526 0.95225 0.93315 0.90027 0.92699 0.91097 0.93197 0.88633 0.91984 0.90314 0.95368 0.76249 0.77928 0.86348 0.85425 0.88269 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.67 71.98 0.70 -2.84 16 2 C -0.12 -2.71 5.28 30.59 0.16 -2.55 16 3 C -0.09 -2.38 2.33 -10.79 -0.03 -2.41 16 4 H 0.04 1.36 7.60 -2.39 -0.02 1.34 16 5 C -0.14 -2.94 8.80 71.98 0.63 -2.31 16 6 C -0.10 -2.53 3.92 30.60 0.12 -2.41 16 7 C 0.16 4.80 1.93 44.99 0.09 4.89 16 8 H 0.09 2.71 4.57 -2.39 -0.01 2.69 16 9 C 0.06 1.69 6.76 71.98 0.49 2.18 16 10 O -0.58 -16.10 12.83 -148.98 -1.91 -18.01 16 11 N -0.71 -29.44 4.55 -324.45 -1.48 -30.92 16 12 C 0.40 19.99 7.63 133.42 1.02 21.01 16 13 C -0.37 -16.59 8.84 22.73 0.20 -16.39 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 15 C -0.35 -18.33 9.83 22.87 0.22 -18.11 16 16 C 0.26 15.30 6.55 40.18 0.26 15.56 16 17 C -0.47 -27.16 9.14 23.46 0.21 -26.95 16 18 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 19 C 0.03 1.37 5.50 85.29 0.47 1.84 16 20 N -0.75 -42.24 11.46 21.84 0.25 -41.99 16 21 Si 0.98 40.07 29.56 68.60 2.03 42.10 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 25 N -0.57 -33.01 7.89 -186.58 -1.47 -34.49 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.35 6.70 -2.38 -0.02 1.34 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.30 6.29 -2.39 -0.01 1.29 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.13 6.85 -2.39 -0.02 1.12 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 0.89 7.76 -2.38 -0.02 0.87 16 38 H 0.39 7.20 9.12 -74.05 -0.68 6.52 16 39 H 0.39 17.22 8.72 -92.71 -0.81 16.41 16 40 H 0.12 4.53 6.15 -2.91 -0.02 4.51 16 41 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.27 13.98 8.29 -92.71 -0.77 13.21 16 Total: -1.00 -69.07 344.68 1.73 -67.34 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.47 Total: 45.59 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.78 Total: -29.63 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -2.70 Total: -107.39 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.91 Total: -18.01 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -69.07 1.73 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.983 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds