Wall clock time and date at job start Tue Mar 31 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47230 * 2 1 4 4 H 1.09001 * 109.46511 * 304.99912 * 3 2 1 5 5 C 1.53001 * 109.47154 * 64.99766 * 3 2 1 6 6 C 1.52999 * 109.47335 * 185.00120 * 3 2 1 7 7 C 1.52997 * 109.47060 * 174.99641 * 6 3 2 8 8 H 1.08997 * 109.47083 * 55.00165 * 7 6 3 9 9 C 1.53000 * 109.47007 * 174.99933 * 7 6 3 10 10 O 1.42902 * 109.46991 * 54.99707 * 9 7 6 11 11 N 1.46498 * 109.47016 * 294.99880 * 7 6 3 12 12 C 1.38828 * 119.99799 * 155.00397 * 11 7 6 13 13 C 1.39793 * 119.58265 * 359.97438 * 12 11 7 14 14 C 1.38595 * 119.48899 * 180.02562 * 13 12 11 15 15 C 1.38391 * 118.68375 * 359.97438 * 14 13 12 16 16 C 1.40552 * 119.14461 * 0.02562 * 15 14 13 17 17 C 1.41317 * 119.78047 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00308 * 0.02983 * 17 16 15 19 19 C 1.40029 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.30749 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00283 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46934 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47348 * 120.00088 * 21 19 17 24 24 H 1.48500 * 109.47021 * 240.00326 * 21 19 17 25 25 N 1.31953 * 119.58555 * 180.02562 * 12 11 7 26 26 H 1.09004 * 109.47336 * 300.00330 * 1 2 3 27 27 H 1.08998 * 109.47198 * 60.00079 * 1 2 3 28 28 H 1.09007 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46913 * 239.99542 * 2 1 3 30 30 H 1.09006 * 109.47224 * 119.99597 * 2 1 3 31 31 H 1.08993 * 109.47006 * 60.00464 * 5 3 2 32 32 H 1.09005 * 109.46467 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.46879 * 299.99894 * 5 3 2 34 34 H 1.08997 * 109.47216 * 54.99529 * 6 3 2 35 35 H 1.09004 * 109.46651 * 294.99720 * 6 3 2 36 36 H 1.09001 * 109.47603 * 175.00346 * 9 7 6 37 37 H 1.09006 * 109.47295 * 295.00383 * 9 7 6 38 38 H 0.96705 * 113.99511 * 180.02562 * 10 9 7 39 39 H 0.97000 * 120.00387 * 334.99874 * 11 7 6 40 40 H 1.08001 * 120.25666 * 0.02562 * 13 12 11 41 41 H 1.08002 * 120.66216 * 179.72736 * 14 13 12 42 42 H 1.07997 * 120.42683 * 179.97438 * 15 14 13 43 43 H 0.96995 * 120.00429 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2512 8 1 3.6971 3.4716 0.5908 9 6 5.5944 2.8960 -0.2516 10 8 6.0767 2.0336 -1.2839 11 7 3.5716 3.4655 -1.5028 12 6 3.4292 4.8413 -1.6210 13 6 3.7581 5.6646 -0.5402 14 6 3.6146 7.0379 -0.6602 15 6 3.1472 7.5550 -1.8557 16 6 2.8335 6.6751 -2.9060 17 6 2.3546 7.1886 -4.1324 18 1 2.2312 8.2538 -4.2605 19 6 2.0401 6.3161 -5.1816 20 7 2.1891 5.0265 -5.0263 21 14 1.4078 6.9948 -6.8030 22 1 1.3291 8.4755 -6.7228 23 1 2.3338 6.6063 -7.8970 24 1 0.0572 6.4420 -7.0779 25 7 2.9841 5.3554 -2.7519 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.0699 1.5876 2.1491 32 1 1.9983 3.1544 1.3070 33 1 0.5489 2.1253 1.3968 34 1 3.8571 0.8800 -1.0113 35 1 4.0029 0.9836 0.7597 36 1 5.9505 3.9107 -0.4298 37 1 5.9605 2.5468 0.7140 38 1 7.0410 1.9912 -1.3423 39 1 3.3449 2.8885 -2.2489 40 1 4.1211 5.2339 0.3813 41 1 3.8589 7.6913 0.1643 42 1 3.0243 8.6207 -1.9799 43 1 1.9709 4.4221 -5.7529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325977133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:50 Heat of formation + Delta-G solvation = -33.946007 kcal Electronic energy + Delta-G solvation = -22220.099647 eV Core-core repulsion = 19071.416480 eV Total energy + Delta-G solvation = -3148.683167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.81600 -37.51610 -36.20544 -34.46896 -33.20388 -31.16297 -30.19698 -29.07192 -27.60325 -26.41753 -25.26795 -23.59681 -21.57855 -21.11848 -20.04110 -19.36837 -17.49969 -17.06754 -16.15894 -15.15833 -15.06904 -14.86072 -14.62425 -14.46690 -13.96248 -13.52542 -13.27257 -13.10759 -12.90625 -12.61319 -12.20939 -11.98088 -11.92316 -11.79279 -11.46298 -11.29707 -11.18104 -10.99558 -10.91641 -10.57206 -10.45081 -10.36609 -10.27797 -10.10865 -9.85008 -9.66367 -9.43840 -8.81253 -7.86068 -7.43795 -6.41024 -6.26929 -4.42491 2.90671 3.14566 3.18880 3.29399 3.34242 4.02285 4.24623 4.60134 4.78965 4.89922 5.02923 5.07350 5.38780 5.44838 5.49326 5.58308 5.66071 5.69326 5.79712 5.90486 5.98817 6.03798 6.08130 6.11533 6.16396 6.19482 6.20958 6.35447 6.36823 6.57501 6.65486 6.67162 6.91567 6.94819 7.02568 7.31127 7.65726 7.84104 7.87749 7.98967 8.23739 8.45296 8.78967 8.86573 9.19775 10.31243 10.46765 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005221 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.275544 B = 5361.554130 C = 6040.001976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.094 4.094 4 H 0.080 0.920 5 C -0.148 4.148 6 C -0.113 4.113 7 C 0.166 3.834 8 H 0.089 0.911 9 C 0.058 3.942 10 O -0.563 6.563 11 N -0.721 5.721 12 C 0.416 3.584 13 C -0.372 4.372 14 C -0.032 4.032 15 C -0.319 4.319 16 C 0.293 3.707 17 C -0.435 4.435 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.713 5.713 21 Si 0.903 3.097 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.275 1.275 25 N -0.531 5.531 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.370 0.630 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -8.793 8.716 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.205 4.205 6 C -0.151 4.151 7 C 0.059 3.941 8 H 0.106 0.894 9 C -0.022 4.022 10 O -0.367 6.367 11 N -0.356 5.356 12 C 0.175 3.825 13 C -0.398 4.398 14 C -0.056 4.056 15 C -0.343 4.343 16 C 0.166 3.834 17 C -0.467 4.467 18 H 0.100 0.900 19 C -0.154 4.154 20 N -0.335 5.335 21 Si 0.728 3.272 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.253 5.253 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.215 0.785 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.092 -9.604 8.007 12.551 hybrid contribution 0.576 0.798 -0.093 0.988 sum 1.668 -8.806 7.913 11.956 Atomic orbital electron populations 1.21822 0.96185 1.00992 1.02093 1.21553 0.95708 0.96723 1.01445 1.21180 0.95359 0.95652 0.99080 0.90209 1.21905 1.01072 1.00798 0.96736 1.21757 0.94998 0.95954 1.02347 1.20828 0.90218 0.94081 0.88977 0.89359 1.22872 0.96595 0.93598 0.89132 1.86520 1.25617 1.68118 1.56480 1.44108 1.73325 1.03577 1.14611 1.18555 0.89465 0.84155 0.90301 1.20593 1.25544 0.93981 0.99726 1.20575 0.95251 0.94017 0.95768 1.21512 1.17608 0.98654 0.96482 1.18205 0.87197 0.86218 0.91770 1.19608 1.37148 0.94387 0.95571 0.89966 1.26045 0.94510 0.94663 1.00164 1.70166 1.29783 1.02767 1.30755 0.86351 0.78899 0.80374 0.81620 1.18492 1.19983 1.19989 1.68233 1.23423 1.13671 1.19939 0.92656 0.92591 0.93309 0.92195 0.92531 0.93303 0.92253 0.92837 0.90850 0.91640 0.93066 0.94269 0.78505 0.76831 0.89423 0.89154 0.88885 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.12 -1.35 5.40 -26.73 -0.14 -1.49 16 3 C -0.09 -1.26 2.33 -90.62 -0.21 -1.47 16 4 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 5 C -0.15 -1.87 8.71 37.16 0.32 -1.55 16 6 C -0.11 -1.52 3.94 -26.73 -0.11 -1.62 16 7 C 0.17 2.64 1.92 -67.93 -0.13 2.51 16 8 H 0.09 1.41 4.64 -51.93 -0.24 1.17 16 9 C 0.06 0.84 6.76 37.16 0.25 1.10 16 10 O -0.56 -8.29 12.83 -35.23 -0.45 -8.74 16 11 N -0.72 -14.63 4.56 -53.91 -0.25 -14.87 16 12 C 0.42 10.16 7.63 -155.32 -1.18 8.98 16 13 C -0.37 -8.54 8.84 -38.87 -0.34 -8.89 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 16 C 0.29 8.29 6.55 -85.00 -0.56 7.73 16 17 C -0.43 -12.00 9.14 -37.74 -0.34 -12.34 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 20 N -0.71 -19.31 11.46 55.55 0.64 -18.68 16 21 Si 0.90 19.08 29.56 -169.99 -5.02 14.06 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 N -0.53 -14.85 7.89 -10.33 -0.08 -14.93 16 26 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.84 6.46 -51.93 -0.34 0.50 16 33 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.85 7.76 -51.93 -0.40 0.45 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.37 3.79 9.12 45.56 0.42 4.20 16 39 H 0.40 8.48 8.72 -40.82 -0.36 8.12 16 40 H 0.09 1.77 6.15 -52.49 -0.32 1.45 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -30.48 344.54 -9.01 -39.49 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.07 Total: 14.84 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.96 Total: -16.36 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.31 Total: -48.47 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.45 Total: -8.74 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.48 -9.01 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.543 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds