Wall clock time and date at job start Tue Mar 31 2020 00:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47230 * 2 1 4 4 H 1.09001 * 109.46511 * 304.99912 * 3 2 1 5 5 C 1.53001 * 109.47154 * 64.99766 * 3 2 1 6 6 C 1.52999 * 109.47335 * 185.00120 * 3 2 1 7 7 C 1.52997 * 109.47060 * 174.99641 * 6 3 2 8 8 H 1.08997 * 109.47083 * 55.00165 * 7 6 3 9 9 C 1.53000 * 109.47007 * 174.99933 * 7 6 3 10 10 O 1.42902 * 109.46991 * 54.99707 * 9 7 6 11 11 N 1.46498 * 109.47016 * 294.99880 * 7 6 3 12 12 C 1.38828 * 119.99799 * 155.00397 * 11 7 6 13 13 C 1.39793 * 119.58265 * 359.97438 * 12 11 7 14 14 C 1.38595 * 119.48899 * 180.02562 * 13 12 11 15 15 C 1.38391 * 118.68375 * 359.97438 * 14 13 12 16 16 C 1.40552 * 119.14461 * 0.02562 * 15 14 13 17 17 C 1.41317 * 119.78047 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00308 * 0.02983 * 17 16 15 19 19 C 1.40029 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.30749 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00283 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46934 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47348 * 120.00088 * 21 19 17 24 24 H 1.48500 * 109.47021 * 240.00326 * 21 19 17 25 25 N 1.31953 * 119.58555 * 180.02562 * 12 11 7 26 26 H 1.09004 * 109.47336 * 300.00330 * 1 2 3 27 27 H 1.08998 * 109.47198 * 60.00079 * 1 2 3 28 28 H 1.09007 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46913 * 239.99542 * 2 1 3 30 30 H 1.09006 * 109.47224 * 119.99597 * 2 1 3 31 31 H 1.08993 * 109.47006 * 60.00464 * 5 3 2 32 32 H 1.09005 * 109.46467 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.46879 * 299.99894 * 5 3 2 34 34 H 1.08997 * 109.47216 * 54.99529 * 6 3 2 35 35 H 1.09004 * 109.46651 * 294.99720 * 6 3 2 36 36 H 1.09001 * 109.47603 * 175.00346 * 9 7 6 37 37 H 1.09006 * 109.47295 * 295.00383 * 9 7 6 38 38 H 0.96705 * 113.99511 * 180.02562 * 10 9 7 39 39 H 0.97000 * 120.00387 * 334.99874 * 11 7 6 40 40 H 1.08001 * 120.25666 * 0.02562 * 13 12 11 41 41 H 1.08002 * 120.66216 * 179.72736 * 14 13 12 42 42 H 1.07997 * 120.42683 * 179.97438 * 15 14 13 43 43 H 0.96995 * 120.00429 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0644 2.8850 -0.2512 8 1 3.6971 3.4716 0.5908 9 6 5.5944 2.8960 -0.2516 10 8 6.0767 2.0336 -1.2839 11 7 3.5716 3.4655 -1.5028 12 6 3.4292 4.8413 -1.6210 13 6 3.7581 5.6646 -0.5402 14 6 3.6146 7.0379 -0.6602 15 6 3.1472 7.5550 -1.8557 16 6 2.8335 6.6751 -2.9060 17 6 2.3546 7.1886 -4.1324 18 1 2.2312 8.2538 -4.2605 19 6 2.0401 6.3161 -5.1816 20 7 2.1891 5.0265 -5.0263 21 14 1.4078 6.9948 -6.8030 22 1 1.3291 8.4755 -6.7228 23 1 2.3338 6.6063 -7.8970 24 1 0.0572 6.4420 -7.0779 25 7 2.9841 5.3554 -2.7519 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.0699 1.5876 2.1491 32 1 1.9983 3.1544 1.3070 33 1 0.5489 2.1253 1.3968 34 1 3.8571 0.8800 -1.0113 35 1 4.0029 0.9836 0.7597 36 1 5.9505 3.9107 -0.4298 37 1 5.9605 2.5468 0.7140 38 1 7.0410 1.9912 -1.3423 39 1 3.3449 2.8885 -2.2489 40 1 4.1211 5.2339 0.3813 41 1 3.8589 7.6913 0.1643 42 1 3.0243 8.6207 -1.9799 43 1 1.9709 4.4221 -5.7529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325977133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:49 Heat of formation + Delta-G solvation = -53.357794 kcal Electronic energy + Delta-G solvation = -22220.941406 eV Core-core repulsion = 19071.416480 eV Total energy + Delta-G solvation = -3149.524926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40258 -39.04063 -37.28968 -36.04098 -34.98438 -32.68057 -31.98722 -30.43168 -29.14684 -27.62263 -27.08441 -24.65072 -23.40365 -22.80802 -21.36214 -20.61293 -19.21398 -18.52726 -17.80724 -16.71272 -16.47630 -16.22844 -16.05259 -15.84979 -15.47562 -15.05256 -14.65808 -14.37805 -14.29347 -14.10670 -13.75790 -13.49550 -13.06840 -12.94265 -12.86861 -12.72575 -12.61426 -12.53091 -12.35865 -12.25120 -11.92667 -11.69898 -11.50773 -11.35963 -11.26725 -11.16397 -10.81286 -10.57570 -9.81048 -9.39976 -8.20740 -8.20342 -6.46313 1.07856 1.38629 1.40421 1.55748 1.57462 2.24966 2.70111 2.94227 3.50554 3.71103 3.99332 4.02615 4.10408 4.30426 4.36149 4.40880 4.46316 4.54275 4.55956 4.68074 4.72573 4.80895 4.83880 4.93580 4.98808 5.02709 5.03309 5.11840 5.13835 5.20302 5.22380 5.28313 5.34667 5.41261 5.59114 5.60402 5.75012 5.99147 6.12317 6.25146 6.61999 6.87115 6.93229 7.00427 7.27413 8.38939 8.54066 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005221 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.275544 B = 5361.554130 C = 6040.001976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.040 0.960 5 C -0.144 4.144 6 C -0.101 4.101 7 C 0.159 3.841 8 H 0.091 0.909 9 C 0.063 3.937 10 O -0.582 6.582 11 N -0.715 5.715 12 C 0.400 3.600 13 C -0.367 4.367 14 C -0.030 4.030 15 C -0.348 4.348 16 C 0.260 3.740 17 C -0.473 4.473 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.751 5.751 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.267 1.267 25 N -0.568 5.568 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.389 0.611 39 H 0.387 0.613 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -9.846 10.209 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.059 0.941 5 C -0.201 4.201 6 C -0.139 4.139 7 C 0.053 3.947 8 H 0.109 0.891 9 C -0.017 4.017 10 O -0.389 6.389 11 N -0.348 5.348 12 C 0.159 3.841 13 C -0.392 4.392 14 C -0.054 4.054 15 C -0.371 4.371 16 C 0.133 3.867 17 C -0.505 4.505 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.373 5.373 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.192 1.192 25 N -0.290 5.290 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.221 0.779 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.644 -10.683 9.547 14.421 hybrid contribution 0.482 1.035 -0.414 1.214 sum 2.127 -9.648 9.133 13.455 Atomic orbital electron populations 1.21820 0.96018 1.01833 1.01400 1.21518 0.95852 0.95345 1.02259 1.21116 0.95271 0.96621 0.98068 0.94130 1.21869 1.01255 0.99924 0.97064 1.21683 0.94949 0.94159 1.03084 1.21168 0.91443 0.95263 0.86823 0.89138 1.22772 0.95284 0.92694 0.90928 1.86475 1.27666 1.67876 1.56840 1.44300 1.72667 1.01976 1.15861 1.18992 0.89030 0.85959 0.90099 1.20934 1.24104 0.93910 1.00285 1.20995 0.93680 0.94792 0.95918 1.21659 1.19362 0.98850 0.97256 1.18674 0.87985 0.87080 0.92984 1.19947 1.38960 0.94925 0.96709 0.89748 1.26953 0.94168 0.94742 1.03726 1.70274 1.30737 1.04128 1.32203 0.85133 0.78323 0.79729 0.76307 1.17837 1.19212 1.19207 1.68195 1.24954 1.13963 1.21924 0.92193 0.94474 0.91695 0.92586 0.90405 0.90762 0.94036 0.92833 0.92027 0.88639 0.95358 0.90319 0.76253 0.77930 0.86328 0.85406 0.88265 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.67 71.98 0.70 -2.53 16 2 C -0.11 -2.39 5.40 30.59 0.17 -2.22 16 3 C -0.09 -2.37 2.33 -10.79 -0.03 -2.40 16 4 H 0.04 1.36 7.62 -2.39 -0.02 1.34 16 5 C -0.14 -3.38 8.71 71.98 0.63 -2.76 16 6 C -0.10 -2.53 3.94 30.59 0.12 -2.41 16 7 C 0.16 4.81 1.92 44.99 0.09 4.89 16 8 H 0.09 2.71 4.64 -2.39 -0.01 2.70 16 9 C 0.06 1.69 6.76 71.98 0.49 2.18 16 10 O -0.58 -16.11 12.83 -148.98 -1.91 -18.02 16 11 N -0.71 -29.44 4.56 -324.46 -1.48 -30.92 16 12 C 0.40 19.94 7.63 133.42 1.02 20.96 16 13 C -0.37 -16.56 8.84 22.73 0.20 -16.36 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 15 C -0.35 -18.28 9.83 22.87 0.22 -18.05 16 16 C 0.26 15.29 6.55 40.18 0.26 15.55 16 17 C -0.47 -27.16 9.14 23.46 0.21 -26.94 16 18 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 19 C 0.03 1.37 5.50 85.29 0.47 1.84 16 20 N -0.75 -42.24 11.46 21.84 0.25 -41.98 16 21 Si 0.98 40.05 29.56 68.60 2.03 42.08 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 N -0.57 -32.98 7.89 -186.59 -1.47 -34.45 16 26 H 0.06 1.19 6.57 -2.38 -0.02 1.17 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.11 6.46 -2.38 -0.02 1.10 16 33 H 0.05 1.24 6.56 -2.39 -0.02 1.23 16 34 H 0.06 1.72 7.73 -2.39 -0.02 1.70 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 0.89 7.76 -2.39 -0.02 0.87 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.39 7.20 9.12 -74.05 -0.68 6.53 16 39 H 0.39 17.22 8.72 -92.71 -0.81 16.41 16 40 H 0.12 4.53 6.15 -2.91 -0.02 4.51 16 41 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.27 13.98 8.29 -92.71 -0.77 13.21 16 Total: -1.00 -68.92 344.54 1.72 -67.20 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -0.47 Total: 45.47 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.77 Total: -29.37 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -2.70 Total: -107.35 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.91 Total: -18.02 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -68.92 1.72 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds