Wall clock time and date at job start Tue Mar 31 2020 00:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 O 1.42903 * 109.47331 * 240.00051 * 2 1 3 5 5 C 1.53006 * 109.46970 * 119.99908 * 2 1 3 6 6 C 1.52996 * 109.47112 * 299.99834 * 5 2 1 7 7 C 1.53009 * 109.46775 * 180.02562 * 5 2 1 8 8 C 1.52999 * 109.47181 * 60.00611 * 5 2 1 9 9 N 1.46496 * 109.46855 * 179.97438 * 8 5 2 10 10 C 1.38823 * 119.99790 * 179.97438 * 9 8 5 11 11 C 1.39803 * 119.58538 * 0.02562 * 10 9 8 12 12 C 1.38590 * 119.48949 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68545 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.14736 * 0.02562 * 13 12 11 15 15 C 1.41323 * 119.78413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99816 * 7.19465 * 15 14 13 17 17 C 1.40028 * 119.99880 * 187.18977 * 15 14 13 18 18 N 1.30747 * 120.00036 * 7.20797 * 17 15 14 19 19 Si 1.86800 * 119.99586 * 186.92785 * 17 15 14 20 20 H 1.48494 * 109.47153 * 265.29181 * 19 17 15 21 21 H 1.48497 * 109.47286 * 25.29783 * 19 17 15 22 22 H 1.48511 * 109.46585 * 145.29571 * 19 17 15 23 23 N 1.31951 * 119.58769 * 180.29685 * 10 9 8 24 24 H 1.09000 * 109.47717 * 299.99551 * 1 2 3 25 25 H 1.08995 * 109.47260 * 60.00293 * 1 2 3 26 26 H 1.09008 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47092 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47403 * 300.00013 * 3 2 1 29 29 H 1.09005 * 109.46945 * 59.99833 * 3 2 1 30 30 H 0.96699 * 113.99754 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.46785 * 179.97438 * 6 5 2 32 32 H 1.08996 * 109.47668 * 300.00178 * 6 5 2 33 33 H 1.09003 * 109.46993 * 60.00520 * 6 5 2 34 34 H 1.08998 * 109.47008 * 299.99968 * 7 5 2 35 35 H 1.08999 * 109.46908 * 59.99883 * 7 5 2 36 36 H 1.08995 * 109.46865 * 180.02562 * 7 5 2 37 37 H 1.08998 * 109.47497 * 59.99484 * 8 5 2 38 38 H 1.09003 * 109.46947 * 299.99495 * 8 5 2 39 39 H 0.96998 * 120.00236 * 0.02562 * 9 8 5 40 40 H 1.07997 * 120.25046 * 0.04363 * 11 10 9 41 41 H 1.08008 * 120.65600 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.42520 * 180.02562 * 13 12 11 43 43 H 0.96998 * 119.99668 * 179.72260 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 0.0000 2.4985 7 6 3.5700 -0.7207 1.2496 8 6 1.5301 -2.1638 1.2493 9 7 2.0189 -2.8545 2.4451 10 6 1.6833 -4.1835 2.6650 11 6 0.8787 -4.8545 1.7393 12 6 0.5445 -6.1810 1.9610 13 6 1.0217 -6.8048 3.1004 14 6 1.8265 -6.0766 3.9934 15 6 2.3206 -6.7001 5.1614 16 1 2.1786 -7.7605 5.3087 17 6 2.9945 -5.9430 6.1276 18 7 3.0444 -4.6409 6.0200 19 14 3.8155 -6.7928 7.5744 20 1 2.8873 -6.8041 8.7335 21 1 4.1569 -8.1886 7.1999 22 1 5.0550 -6.0610 7.9399 23 7 2.1232 -4.7960 3.7478 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 2.9703 -0.7121 -1.2327 31 1 1.8930 -0.5141 3.3885 32 1 1.8933 1.0277 2.4985 33 1 0.4399 0.0000 2.4985 34 1 3.9337 -1.2343 0.3596 35 1 3.9329 0.3071 1.2498 36 1 3.9333 -1.2349 2.1393 37 1 1.8934 -2.6776 0.3593 38 1 0.4400 -2.1638 1.2493 39 1 2.5764 -2.3830 3.0837 40 1 0.5208 -4.3430 0.8580 41 1 -0.0762 -6.7174 1.2584 42 1 0.7789 -7.8379 3.3008 43 1 3.5078 -4.1162 6.6914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328002990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:47 Heat of formation + Delta-G solvation = -24.412336 kcal Electronic energy + Delta-G solvation = -22367.125857 eV Core-core repulsion = 19218.856100 eV Total energy + Delta-G solvation = -3148.269756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92442 -38.06496 -35.57669 -33.82046 -32.90136 -30.97354 -30.29490 -28.89138 -27.89578 -26.85354 -25.29649 -25.14854 -22.28470 -21.41234 -20.27621 -18.71199 -17.29553 -17.11146 -15.80442 -15.31582 -14.93216 -14.86655 -14.48835 -14.39549 -14.13173 -13.70811 -13.16976 -12.84898 -12.77915 -12.58326 -12.35130 -12.13210 -12.03406 -11.93519 -11.76277 -11.73432 -11.30727 -11.15584 -11.10466 -10.94367 -10.77063 -10.60411 -10.41981 -10.19665 -9.91139 -9.70607 -9.38408 -8.79578 -7.86561 -7.44249 -6.45670 -6.31348 -4.41466 2.90942 3.12961 3.16989 3.29292 3.34245 4.01203 4.07783 4.31253 4.62529 4.70633 4.87166 4.87835 5.03505 5.14752 5.27638 5.50403 5.65217 5.67703 5.76857 5.78618 5.80849 5.89703 5.92998 6.01510 6.03254 6.09192 6.21350 6.22251 6.30596 6.40105 6.48199 6.66066 6.92416 6.95356 7.01501 7.29154 7.61854 7.66401 7.87774 7.98480 8.22412 8.43209 8.75154 8.85642 9.17766 10.28510 10.44548 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.004409 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.275476 B = 6349.467991 C = 7115.444871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.141 3.859 3 C -0.180 4.180 4 O -0.558 6.558 5 C -0.097 4.097 6 C -0.145 4.145 7 C -0.149 4.149 8 C 0.156 3.844 9 N -0.736 5.736 10 C 0.412 3.588 11 C -0.365 4.365 12 C -0.032 4.032 13 C -0.318 4.318 14 C 0.296 3.704 15 C -0.439 4.439 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.721 5.721 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.277 1.277 23 N -0.535 5.535 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.373 0.627 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.393 0.607 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 11.954 -7.685 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.100 3.900 3 C -0.237 4.237 4 O -0.364 6.364 5 C -0.098 4.098 6 C -0.202 4.202 7 C -0.206 4.206 8 C 0.030 3.970 9 N -0.374 5.374 10 C 0.172 3.828 11 C -0.391 4.391 12 C -0.056 4.056 13 C -0.341 4.341 14 C 0.169 3.831 15 C -0.471 4.471 16 H 0.100 0.900 17 C -0.149 4.149 18 N -0.343 5.343 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.185 1.185 22 H -0.202 1.202 23 N -0.257 5.257 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.221 0.779 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.229 0.771 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.284 12.539 -7.267 14.495 hybrid contribution 0.629 -0.567 0.388 0.932 sum 0.344 11.971 -6.879 13.811 Atomic orbital electron populations 1.21886 0.92797 1.03375 1.02157 1.21083 0.94738 0.90192 0.84005 1.22579 1.01679 0.96856 1.02633 1.86555 1.26607 1.79608 1.43650 1.21368 0.96361 0.96053 0.96034 1.21973 1.01432 0.99660 0.97131 1.21954 0.94249 1.01453 1.02922 1.21037 0.97801 0.89584 0.88569 1.44208 1.58529 1.09509 1.25163 1.18502 0.89400 0.84779 0.90121 1.20626 1.16802 0.97161 1.04495 1.20599 0.95857 0.93766 0.95406 1.21523 1.11729 1.00494 1.00373 1.18171 0.87134 0.86579 0.91246 1.19551 1.30749 0.95804 1.01013 0.89956 1.26005 0.95287 0.94658 0.98977 1.70101 1.28585 1.05713 1.29878 0.86398 0.79108 0.80603 0.81153 1.19652 1.18532 1.20220 1.68133 1.29136 1.10877 1.17550 0.90878 0.92205 0.91248 0.92062 0.92086 0.91254 0.77908 0.91655 0.92541 0.92126 0.92561 0.92454 0.91438 0.92625 0.93024 0.77148 0.89206 0.89026 0.88789 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.14 37.16 0.30 -1.28 16 2 C 0.14 1.52 0.61 -90.62 -0.06 1.47 16 3 C -0.18 -1.58 8.11 37.16 0.30 -1.28 16 4 O -0.56 -6.57 12.27 -35.23 -0.43 -7.00 16 5 C -0.10 -1.18 0.16 -154.50 -0.03 -1.21 16 6 C -0.14 -1.72 7.59 37.16 0.28 -1.44 16 7 C -0.15 -1.71 7.64 37.16 0.28 -1.42 16 8 C 0.16 2.51 3.28 -4.04 -0.01 2.49 16 9 N -0.74 -14.78 5.12 -60.39 -0.31 -15.09 16 10 C 0.41 10.25 7.65 -155.32 -1.19 9.06 16 11 C -0.36 -8.72 9.34 -38.87 -0.36 -9.08 16 12 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 13 C -0.32 -8.27 9.83 -38.66 -0.38 -8.65 16 14 C 0.30 8.40 6.52 -85.00 -0.55 7.85 16 15 C -0.44 -12.11 9.13 -37.74 -0.34 -12.45 16 16 H 0.08 2.14 7.86 -52.49 -0.41 1.72 16 17 C 0.08 1.96 5.47 -17.34 -0.09 1.86 16 18 N -0.72 -19.35 11.56 55.55 0.64 -18.71 16 19 Si 0.90 18.95 29.57 -169.99 -5.03 13.92 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 23 N -0.54 -15.00 7.99 -10.33 -0.08 -15.08 16 24 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.85 6.43 -51.92 -0.33 0.52 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 30 H 0.37 3.40 7.33 45.56 0.33 3.73 16 31 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16 32 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 33 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 34 H 0.06 0.61 6.78 -51.93 -0.35 0.26 16 35 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.07 0.91 6.86 -51.93 -0.36 0.55 16 37 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 38 H 0.05 0.87 6.21 -51.93 -0.32 0.54 16 39 H 0.39 7.85 6.28 -40.82 -0.26 7.59 16 40 H 0.09 1.95 6.68 -52.49 -0.35 1.60 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -30.59 329.46 -8.11 -38.70 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.62 Total: 13.53 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.25 Total: -15.23 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.25 Total: -48.89 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.43 Total: -7.00 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.59 -8.11 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328002990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.291 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds