Wall clock time and date at job start Tue Mar 31 2020 00:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 O 1.42903 * 109.47331 * 240.00051 * 2 1 3 5 5 C 1.53006 * 109.46970 * 119.99908 * 2 1 3 6 6 C 1.52996 * 109.47112 * 299.99834 * 5 2 1 7 7 C 1.53009 * 109.46775 * 180.02562 * 5 2 1 8 8 C 1.52999 * 109.47181 * 60.00611 * 5 2 1 9 9 N 1.46496 * 109.46855 * 179.97438 * 8 5 2 10 10 C 1.38823 * 119.99790 * 179.97438 * 9 8 5 11 11 C 1.39803 * 119.58538 * 0.02562 * 10 9 8 12 12 C 1.38590 * 119.48949 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68545 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.14736 * 0.02562 * 13 12 11 15 15 C 1.41323 * 119.78413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99816 * 7.19465 * 15 14 13 17 17 C 1.40028 * 119.99880 * 187.18977 * 15 14 13 18 18 N 1.30747 * 120.00036 * 7.20797 * 17 15 14 19 19 Si 1.86800 * 119.99586 * 186.92785 * 17 15 14 20 20 H 1.48494 * 109.47153 * 265.29181 * 19 17 15 21 21 H 1.48497 * 109.47286 * 25.29783 * 19 17 15 22 22 H 1.48511 * 109.46585 * 145.29571 * 19 17 15 23 23 N 1.31951 * 119.58769 * 180.29685 * 10 9 8 24 24 H 1.09000 * 109.47717 * 299.99551 * 1 2 3 25 25 H 1.08995 * 109.47260 * 60.00293 * 1 2 3 26 26 H 1.09008 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47092 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47403 * 300.00013 * 3 2 1 29 29 H 1.09005 * 109.46945 * 59.99833 * 3 2 1 30 30 H 0.96699 * 113.99754 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.46785 * 179.97438 * 6 5 2 32 32 H 1.08996 * 109.47668 * 300.00178 * 6 5 2 33 33 H 1.09003 * 109.46993 * 60.00520 * 6 5 2 34 34 H 1.08998 * 109.47008 * 299.99968 * 7 5 2 35 35 H 1.08999 * 109.46908 * 59.99883 * 7 5 2 36 36 H 1.08995 * 109.46865 * 180.02562 * 7 5 2 37 37 H 1.08998 * 109.47497 * 59.99484 * 8 5 2 38 38 H 1.09003 * 109.46947 * 299.99495 * 8 5 2 39 39 H 0.96998 * 120.00236 * 0.02562 * 9 8 5 40 40 H 1.07997 * 120.25046 * 0.04363 * 11 10 9 41 41 H 1.08008 * 120.65600 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.42520 * 180.02562 * 13 12 11 43 43 H 0.96998 * 119.99668 * 179.72260 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 0.0000 2.4985 7 6 3.5700 -0.7207 1.2496 8 6 1.5301 -2.1638 1.2493 9 7 2.0189 -2.8545 2.4451 10 6 1.6833 -4.1835 2.6650 11 6 0.8787 -4.8545 1.7393 12 6 0.5445 -6.1810 1.9610 13 6 1.0217 -6.8048 3.1004 14 6 1.8265 -6.0766 3.9934 15 6 2.3206 -6.7001 5.1614 16 1 2.1786 -7.7605 5.3087 17 6 2.9945 -5.9430 6.1276 18 7 3.0444 -4.6409 6.0200 19 14 3.8155 -6.7928 7.5744 20 1 2.8873 -6.8041 8.7335 21 1 4.1569 -8.1886 7.1999 22 1 5.0550 -6.0610 7.9399 23 7 2.1232 -4.7960 3.7478 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 2.9703 -0.7121 -1.2327 31 1 1.8930 -0.5141 3.3885 32 1 1.8933 1.0277 2.4985 33 1 0.4399 0.0000 2.4985 34 1 3.9337 -1.2343 0.3596 35 1 3.9329 0.3071 1.2498 36 1 3.9333 -1.2349 2.1393 37 1 1.8934 -2.6776 0.3593 38 1 0.4400 -2.1638 1.2493 39 1 2.5764 -2.3830 3.0837 40 1 0.5208 -4.3430 0.8580 41 1 -0.0762 -6.7174 1.2584 42 1 0.7789 -7.8379 3.3008 43 1 3.5078 -4.1162 6.6914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328002990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:46 Heat of formation + Delta-G solvation = -44.042263 kcal Electronic energy + Delta-G solvation = -22367.977074 eV Core-core repulsion = 19218.856100 eV Total energy + Delta-G solvation = -3149.120974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98601 -39.88969 -36.92276 -35.46089 -34.43821 -32.34823 -31.94227 -30.49199 -28.92814 -27.85346 -27.25739 -26.36108 -23.47488 -23.28945 -21.99490 -19.75153 -19.18203 -18.52657 -17.16144 -16.73321 -16.44334 -16.17831 -15.90306 -15.59696 -15.49253 -15.26161 -14.63450 -14.39965 -14.26481 -13.80403 -13.58565 -13.27619 -13.23862 -12.95990 -12.84132 -12.80417 -12.75969 -12.70752 -12.59367 -12.24023 -12.12834 -12.03002 -11.80428 -11.76417 -11.24354 -11.16239 -10.64863 -10.62059 -9.84432 -9.43342 -8.33797 -8.20949 -6.46691 1.06054 1.34042 1.41465 1.54532 1.58977 2.25363 2.66646 2.91960 3.36702 3.65840 3.72232 3.86790 4.05414 4.18154 4.26880 4.29495 4.37872 4.66097 4.70448 4.75495 4.78307 4.83206 4.89625 4.95213 4.96100 5.00096 5.01541 5.02503 5.03078 5.09111 5.13295 5.17585 5.29893 5.38490 5.50990 5.52781 5.72267 5.96435 6.07478 6.23654 6.57035 6.84610 6.86769 6.96295 7.23430 8.33641 8.51007 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.004409 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.275476 B = 6349.467991 C = 7115.444871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.144 3.856 3 C -0.175 4.175 4 O -0.573 6.573 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.147 4.147 8 C 0.156 3.844 9 N -0.726 5.726 10 C 0.396 3.604 11 C -0.369 4.369 12 C -0.030 4.030 13 C -0.345 4.345 14 C 0.262 3.738 15 C -0.475 4.475 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.755 5.755 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.258 1.258 22 H -0.268 1.268 23 N -0.567 5.567 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.384 0.616 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.392 0.608 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 13.305 -8.039 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.103 3.897 3 C -0.232 4.232 4 O -0.382 6.382 5 C -0.088 4.088 6 C -0.200 4.200 7 C -0.204 4.204 8 C 0.032 3.968 9 N -0.363 5.363 10 C 0.155 3.845 11 C -0.395 4.395 12 C -0.054 4.054 13 C -0.368 4.368 14 C 0.135 3.865 15 C -0.507 4.507 16 H 0.104 0.896 17 C -0.191 4.191 18 N -0.378 5.378 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.193 1.193 23 N -0.290 5.290 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.233 0.767 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.227 0.773 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.110 13.921 -7.660 15.890 hybrid contribution 0.448 -0.925 0.379 1.096 sum 0.559 12.996 -7.281 14.907 Atomic orbital electron populations 1.21936 0.93037 1.02401 1.03186 1.21097 0.94626 0.91265 0.82729 1.22532 1.02358 0.94922 1.03418 1.86536 1.27784 1.79959 1.43888 1.21315 0.96824 0.93408 0.97269 1.21966 1.01448 1.00837 0.95767 1.21947 0.93560 1.02925 1.01966 1.21194 0.97434 0.91781 0.86386 1.44350 1.57784 1.08009 1.26108 1.18956 0.89372 0.86433 0.89768 1.20920 1.16282 0.97422 1.04872 1.20988 0.95312 0.93911 0.95180 1.21682 1.12695 1.01101 1.01306 1.18661 0.88082 0.87386 0.92374 1.19915 1.32398 0.96352 1.02008 0.89613 1.26922 0.95339 0.95246 1.01630 1.70187 1.29093 1.07258 1.31215 0.85162 0.78048 0.79277 0.76946 1.18701 1.18121 1.19251 1.68125 1.30509 1.11224 1.19114 0.89733 0.91363 0.93204 0.90986 0.91474 0.90330 0.76663 0.94013 0.89842 0.92135 0.92095 0.89765 0.93827 0.93553 0.93588 0.77253 0.87134 0.85528 0.87977 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.14 71.98 0.59 -2.39 16 2 C 0.14 2.80 0.61 -10.79 -0.01 2.79 16 3 C -0.18 -2.48 8.11 71.98 0.58 -1.89 16 4 O -0.57 -12.43 12.27 -148.98 -1.83 -14.26 16 5 C -0.09 -2.01 0.16 -52.18 -0.01 -2.01 16 6 C -0.14 -3.20 7.59 71.98 0.55 -2.65 16 7 C -0.15 -3.15 7.64 71.99 0.55 -2.60 16 8 C 0.16 5.00 3.28 86.38 0.28 5.28 16 9 N -0.73 -29.69 5.12 -344.99 -1.77 -31.46 16 10 C 0.40 20.11 7.65 133.42 1.02 21.13 16 11 C -0.37 -17.64 9.34 22.73 0.21 -17.43 16 12 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 13 C -0.34 -18.30 9.83 22.87 0.22 -18.08 16 14 C 0.26 15.39 6.52 40.18 0.26 15.65 16 15 C -0.47 -26.97 9.13 23.46 0.21 -26.76 16 16 H 0.09 4.59 7.86 -2.91 -0.02 4.56 16 17 C 0.03 1.60 5.47 85.29 0.47 2.06 16 18 N -0.76 -41.46 11.56 21.84 0.25 -41.21 16 19 Si 0.99 39.15 29.57 68.60 2.03 41.18 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 23 N -0.57 -32.80 7.99 -186.58 -1.49 -34.30 16 24 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.18 6.43 -2.38 -0.02 1.17 16 27 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.98 6.43 -2.38 -0.02 0.97 16 30 H 0.38 6.20 7.33 -74.06 -0.54 5.66 16 31 H 0.04 1.13 6.86 -2.38 -0.02 1.12 16 32 H 0.08 1.41 6.43 -2.39 -0.02 1.40 16 33 H 0.06 1.34 6.43 -2.39 -0.02 1.33 16 34 H 0.06 1.24 6.78 -2.39 -0.02 1.22 16 35 H 0.08 1.35 6.43 -2.39 -0.02 1.34 16 36 H 0.04 1.15 6.86 -2.39 -0.02 1.13 16 37 H 0.05 1.58 7.46 -2.39 -0.02 1.56 16 38 H 0.05 1.54 6.21 -2.39 -0.01 1.52 16 39 H 0.39 16.13 6.28 -92.71 -0.58 15.54 16 40 H 0.11 4.72 6.68 -2.91 -0.02 4.70 16 41 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 43 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 Total: -1.00 -67.74 329.46 2.27 -65.48 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.09 Total: 42.64 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 5.16 Total: -28.08 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.01 Total: -106.96 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.83 Total: -14.26 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -67.74 2.27 -65.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328002990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.435 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds