Wall clock time and date at job start Tue Mar 31 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 120.00229 * 2 1 4 4 C 1.47108 * 119.99898 * 173.09860 * 3 2 1 5 5 O 1.21609 * 119.99824 * 354.11271 * 4 3 2 6 6 N 1.34775 * 119.99710 * 174.11019 * 4 3 2 7 7 C 1.46499 * 119.99889 * 179.97438 * 6 4 3 8 8 C 1.53785 * 113.61524 * 254.13980 * 7 6 4 9 9 C 1.53951 * 87.01724 * 220.04891 * 8 7 6 10 10 C 1.53005 * 113.66513 * 139.93478 * 9 8 7 11 11 N 1.46500 * 109.47172 * 87.43671 * 10 9 8 12 12 C 1.36939 * 120.00211 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99426 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00187 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99990 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47230 * 90.00244 * 16 14 12 18 18 H 1.48506 * 109.47180 * 209.99667 * 16 14 12 19 19 H 1.48496 * 109.47527 * 329.99998 * 16 14 12 20 20 C 1.53775 * 113.61460 * 156.53285 * 7 6 4 21 21 C 1.50707 * 119.99906 * 179.97438 * 2 1 3 22 22 C 1.53006 * 117.49821 * 1.72989 * 21 2 1 23 23 C 1.52998 * 117.49626 * 293.10945 * 21 2 1 24 24 H 1.09001 * 109.46947 * 90.00285 * 1 2 3 25 25 H 1.08994 * 109.47117 * 209.99979 * 1 2 3 26 26 H 1.09000 * 109.46912 * 330.00204 * 1 2 3 27 27 H 1.07995 * 119.99794 * 352.81713 * 3 2 1 28 28 H 0.97002 * 120.00313 * 0.02562 * 6 4 3 29 29 H 1.09003 * 112.84704 * 25.33437 * 7 6 4 30 30 H 1.08999 * 113.61153 * 334.56885 * 8 7 6 31 31 H 1.08994 * 113.61313 * 105.47168 * 8 7 6 32 32 H 1.09003 * 113.61271 * 270.79945 * 9 8 7 33 33 H 1.09000 * 109.46952 * 207.43846 * 10 9 8 34 34 H 1.08996 * 109.47149 * 327.43993 * 10 9 8 35 35 H 0.97004 * 120.00292 * 0.02562 * 11 10 9 36 36 H 0.96996 * 120.00240 * 180.02562 * 15 14 12 37 37 H 1.09006 * 113.61794 * 254.53182 * 20 7 6 38 38 H 1.09005 * 113.61739 * 25.34780 * 20 7 6 39 39 H 1.08994 * 115.54893 * 147.44126 * 21 2 1 40 40 H 1.09005 * 117.49562 * 0.02562 * 22 21 2 41 41 H 1.09000 * 117.49619 * 145.01932 * 22 21 2 42 42 H 1.09001 * 117.49841 * 214.97518 * 23 21 2 43 43 H 1.08999 * 117.49904 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6351 1.1563 0.1531 5 8 4.2252 0.1189 0.3865 6 7 4.3214 2.3101 0.0345 7 6 5.7784 2.3147 0.1875 8 6 6.2560 2.9168 1.5196 9 6 7.3899 3.5831 0.7194 10 6 7.6946 5.0156 1.1623 11 7 8.6694 4.9919 2.2556 12 6 9.0969 6.1652 2.8174 13 1 8.7150 7.1081 2.4548 14 6 10.0210 6.1427 3.8530 15 7 10.4315 7.2705 4.3933 16 14 10.6820 4.5119 4.4797 17 1 11.9014 4.1455 3.7154 18 1 11.0195 4.6354 5.9206 19 1 9.6508 3.4584 4.3013 20 6 6.4670 3.5008 -0.5079 21 6 2.2605 -1.3052 0.0006 22 6 1.4389 -2.5953 -0.0398 23 6 2.1524 -2.1827 1.2492 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6384 2.0833 -0.1169 28 1 3.8507 3.1376 -0.1513 29 1 6.2313 1.3504 -0.0431 30 1 5.5530 3.6270 1.9547 31 1 6.6046 2.1722 2.2352 32 1 8.2851 2.9669 0.6346 33 1 8.1044 5.5763 0.3221 34 1 6.7765 5.4931 1.5045 35 1 9.0127 4.1450 2.5810 36 1 11.0775 7.2549 5.1167 37 1 6.9857 3.2272 -1.4268 38 1 5.8214 4.3706 -0.6294 39 1 3.2133 -1.2981 -0.5286 40 1 0.3534 -2.4999 -0.0672 41 1 1.8511 -3.4372 -0.5959 42 1 3.0340 -2.7534 1.5412 43 1 1.5366 -1.8158 2.0704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328829072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:17 Heat of formation + Delta-G solvation = 35.074327 kcal Electronic energy + Delta-G solvation = -20900.474940 eV Core-core repulsion = 17754.784719 eV Total energy + Delta-G solvation = -3145.690221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.26802 -38.89971 -37.57092 -34.67797 -33.70483 -33.16545 -31.14203 -28.57996 -27.03475 -25.57714 -24.14035 -22.82861 -22.52806 -21.51017 -20.62064 -19.77693 -18.61812 -17.55662 -17.19965 -16.35502 -15.66556 -15.16565 -14.95909 -14.67129 -14.39514 -13.86252 -13.71839 -13.45429 -13.31790 -13.16393 -12.69548 -12.58630 -12.33756 -12.02368 -11.78860 -11.75003 -11.56031 -11.51105 -11.03832 -10.91376 -10.76044 -10.59689 -10.23653 -10.19635 -9.96958 -9.59244 -9.53984 -9.21969 -8.89964 -8.81618 -7.19129 -5.74403 -3.09295 1.09079 3.15343 3.20475 3.40600 3.44173 3.47978 3.73837 4.27099 4.48508 4.62109 4.62868 4.71781 4.74549 4.81358 4.86805 4.96344 5.02453 5.06895 5.15035 5.23403 5.35076 5.49360 5.55587 5.61439 5.65989 5.77760 5.84225 5.86266 5.88270 5.95042 5.98350 6.07331 6.13180 6.24001 6.26634 6.35169 6.60648 6.71396 6.83810 7.51854 8.02335 8.22728 8.45071 9.24727 9.97404 10.17732 11.44160 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.002833 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.981966 B = 9879.678061 C =10279.566556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.004 4.004 3 C -0.228 4.228 4 C 0.544 3.456 5 O -0.539 6.539 6 N -0.716 5.716 7 C 0.120 3.880 8 C -0.141 4.141 9 C -0.116 4.116 10 C 0.170 3.830 11 N -0.756 5.756 12 C -0.243 4.243 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.191 4.191 23 C -0.155 4.155 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.400 0.600 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.492 -16.520 -12.392 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.006 4.006 3 C -0.249 4.249 4 C 0.334 3.666 5 O -0.419 6.419 6 N -0.365 5.365 7 C 0.015 3.985 8 C -0.180 4.180 9 C -0.136 4.136 10 C 0.043 3.957 11 N -0.401 5.401 12 C -0.373 4.373 13 H 0.107 0.893 14 C -0.193 4.193 15 N -0.584 5.584 16 Si 0.715 3.285 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.202 1.202 20 C -0.174 4.174 21 C -0.137 4.137 22 C -0.228 4.228 23 C -0.192 4.192 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.234 0.766 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.039 -17.003 -12.180 29.666 hybrid contribution 0.370 -0.476 0.535 0.806 sum -20.669 -17.478 -11.645 29.467 Atomic orbital electron populations 1.21021 0.91174 1.03357 1.03001 1.21815 0.95177 0.93416 0.90217 1.22388 0.93582 0.98661 1.10223 1.18570 0.87788 0.83570 0.76669 1.90740 1.71060 1.31460 1.48634 1.45961 1.07897 1.10109 1.72569 1.22602 0.79048 0.99546 0.97278 1.23509 0.98029 0.99942 0.96492 1.22620 0.96865 0.98688 0.95393 1.20577 0.92521 0.92025 0.90608 1.42715 1.51153 1.05453 1.40804 1.19073 1.19308 0.86204 1.12725 0.89293 1.24678 0.99545 0.96400 0.98688 1.69704 1.35749 1.24543 1.28395 0.86532 0.79071 0.84609 0.78270 1.21083 1.21759 1.20244 1.23306 0.98423 0.97671 0.98015 1.21486 1.00578 0.87840 1.03754 1.23140 0.99015 0.98635 1.01968 1.22801 1.02682 1.02452 0.91274 0.90277 0.90774 0.90887 0.85475 0.76597 0.87112 0.89603 0.91386 0.89051 0.95479 0.95565 0.80641 0.93097 0.90946 0.89508 0.84867 0.88683 0.88671 0.88470 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.49 36.01 0.34 -0.40 16 2 C 0.00 -0.04 5.80 -101.16 -0.59 -0.63 16 3 C -0.23 -2.11 9.62 -37.80 -0.36 -2.47 16 4 C 0.54 6.59 7.67 -12.66 -0.10 6.50 16 5 O -0.54 -8.22 12.92 5.27 0.07 -8.15 16 6 N -0.72 -7.65 5.36 -54.20 -0.29 -7.94 16 7 C 0.12 1.47 4.21 -67.12 -0.28 1.19 16 8 C -0.14 -2.03 7.45 -25.83 -0.19 -2.22 16 9 C -0.12 -1.75 3.75 -89.72 -0.34 -2.08 16 10 C 0.17 3.26 6.10 -4.04 -0.02 3.24 16 11 N -0.76 -18.33 5.41 -59.91 -0.32 -18.66 16 12 C -0.24 -7.03 10.47 -15.06 -0.16 -7.18 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 14 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 15 N -0.94 -29.86 13.97 55.49 0.78 -29.09 16 16 Si 0.88 22.61 27.74 -169.99 -4.71 17.89 16 17 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 20 C -0.14 -1.56 7.39 -25.92 -0.19 -1.76 16 21 C -0.12 -1.19 4.35 -91.77 -0.40 -1.59 16 22 C -0.19 -1.47 9.79 -26.73 -0.26 -1.73 16 23 C -0.16 -1.44 10.23 -26.73 -0.27 -1.72 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.38 6.37 -51.93 -0.33 0.05 16 26 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.40 3.24 8.69 -40.82 -0.35 2.88 16 29 H 0.11 1.49 7.50 -51.93 -0.39 1.10 16 30 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 35 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 36 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.13 1.64 6.22 -51.93 -0.32 1.32 16 40 H 0.09 0.59 6.31 -51.93 -0.33 0.26 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -33.88 350.05 -9.14 -43.02 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.00 Total: 8.53 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.92 Total: -10.87 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.16 Total: -55.69 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.88 -9.14 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328829072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds