Wall clock time and date at job start Tue Mar 31 2020 00:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 120.00229 * 2 1 4 4 C 1.47108 * 119.99898 * 173.09860 * 3 2 1 5 5 O 1.21609 * 119.99824 * 354.11271 * 4 3 2 6 6 N 1.34775 * 119.99710 * 174.11019 * 4 3 2 7 7 C 1.46499 * 119.99889 * 179.97438 * 6 4 3 8 8 C 1.53785 * 113.61524 * 254.13980 * 7 6 4 9 9 C 1.53951 * 87.01724 * 220.04891 * 8 7 6 10 10 C 1.53005 * 113.66513 * 139.93478 * 9 8 7 11 11 N 1.46500 * 109.47172 * 87.43671 * 10 9 8 12 12 C 1.36939 * 120.00211 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99426 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00187 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99990 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47230 * 90.00244 * 16 14 12 18 18 H 1.48506 * 109.47180 * 209.99667 * 16 14 12 19 19 H 1.48496 * 109.47527 * 329.99998 * 16 14 12 20 20 C 1.53775 * 113.61460 * 156.53285 * 7 6 4 21 21 C 1.50707 * 119.99906 * 179.97438 * 2 1 3 22 22 C 1.53006 * 117.49821 * 1.72989 * 21 2 1 23 23 C 1.52998 * 117.49626 * 293.10945 * 21 2 1 24 24 H 1.09001 * 109.46947 * 90.00285 * 1 2 3 25 25 H 1.08994 * 109.47117 * 209.99979 * 1 2 3 26 26 H 1.09000 * 109.46912 * 330.00204 * 1 2 3 27 27 H 1.07995 * 119.99794 * 352.81713 * 3 2 1 28 28 H 0.97002 * 120.00313 * 0.02562 * 6 4 3 29 29 H 1.09003 * 112.84704 * 25.33437 * 7 6 4 30 30 H 1.08999 * 113.61153 * 334.56885 * 8 7 6 31 31 H 1.08994 * 113.61313 * 105.47168 * 8 7 6 32 32 H 1.09003 * 113.61271 * 270.79945 * 9 8 7 33 33 H 1.09000 * 109.46952 * 207.43846 * 10 9 8 34 34 H 1.08996 * 109.47149 * 327.43993 * 10 9 8 35 35 H 0.97004 * 120.00292 * 0.02562 * 11 10 9 36 36 H 0.96996 * 120.00240 * 180.02562 * 15 14 12 37 37 H 1.09006 * 113.61794 * 254.53182 * 20 7 6 38 38 H 1.09005 * 113.61739 * 25.34780 * 20 7 6 39 39 H 1.08994 * 115.54893 * 147.44126 * 21 2 1 40 40 H 1.09005 * 117.49562 * 0.02562 * 22 21 2 41 41 H 1.09000 * 117.49619 * 145.01932 * 22 21 2 42 42 H 1.09001 * 117.49841 * 214.97518 * 23 21 2 43 43 H 1.08999 * 117.49904 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6351 1.1563 0.1531 5 8 4.2252 0.1189 0.3865 6 7 4.3214 2.3101 0.0345 7 6 5.7784 2.3147 0.1875 8 6 6.2560 2.9168 1.5196 9 6 7.3899 3.5831 0.7194 10 6 7.6946 5.0156 1.1623 11 7 8.6694 4.9919 2.2556 12 6 9.0969 6.1652 2.8174 13 1 8.7150 7.1081 2.4548 14 6 10.0210 6.1427 3.8530 15 7 10.4315 7.2705 4.3933 16 14 10.6820 4.5119 4.4797 17 1 11.9014 4.1455 3.7154 18 1 11.0195 4.6354 5.9206 19 1 9.6508 3.4584 4.3013 20 6 6.4670 3.5008 -0.5079 21 6 2.2605 -1.3052 0.0006 22 6 1.4389 -2.5953 -0.0398 23 6 2.1524 -2.1827 1.2492 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6384 2.0833 -0.1169 28 1 3.8507 3.1376 -0.1513 29 1 6.2313 1.3504 -0.0431 30 1 5.5530 3.6270 1.9547 31 1 6.6046 2.1722 2.2352 32 1 8.2851 2.9669 0.6346 33 1 8.1044 5.5763 0.3221 34 1 6.7765 5.4931 1.5045 35 1 9.0127 4.1450 2.5810 36 1 11.0775 7.2549 5.1167 37 1 6.9857 3.2272 -1.4268 38 1 5.8214 4.3706 -0.6294 39 1 3.2133 -1.2981 -0.5286 40 1 0.3534 -2.4999 -0.0672 41 1 1.8511 -3.4372 -0.5959 42 1 3.0340 -2.7534 1.5412 43 1 1.5366 -1.8158 2.0704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328829072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:16 Heat of formation + Delta-G solvation = 12.995005 kcal Electronic energy + Delta-G solvation = -20901.432371 eV Core-core repulsion = 17754.784719 eV Total energy + Delta-G solvation = -3146.647652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21896 -39.87660 -38.40995 -36.46528 -34.58305 -34.20080 -33.16376 -29.41482 -28.42865 -26.64831 -25.27205 -24.20557 -23.24735 -22.85365 -21.63220 -20.96113 -19.60219 -19.35142 -18.02868 -17.33124 -16.75500 -16.44105 -16.11509 -15.96959 -15.59322 -15.29853 -14.86918 -14.65918 -14.31438 -14.03790 -13.92009 -13.66045 -13.37607 -13.18795 -13.13484 -12.98238 -12.78383 -12.48733 -12.22994 -12.15258 -11.97005 -11.86833 -11.68109 -11.44560 -11.34164 -11.27792 -10.93401 -10.48027 -10.04408 -9.67831 -9.29024 -8.04466 -5.37157 0.37976 1.36700 1.39225 1.46768 2.30147 2.35054 2.46798 3.05534 3.26493 3.47918 3.56906 3.63200 3.82954 3.88049 3.91684 4.04392 4.06975 4.15114 4.25439 4.43158 4.54556 4.60559 4.67415 4.74258 4.80471 4.81765 4.86484 4.94387 4.95901 4.98597 5.10106 5.11683 5.20677 5.23544 5.27853 5.43842 5.45666 5.65379 5.70295 5.74974 6.20315 6.69925 7.06982 7.36771 7.84668 8.02827 9.17187 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.002833 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.981966 B = 9879.678061 C =10279.566556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.241 4.241 4 C 0.535 3.465 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.130 3.870 8 C -0.144 4.144 9 C -0.117 4.117 10 C 0.167 3.833 11 N -0.760 5.760 12 C -0.234 4.234 13 H 0.058 0.942 14 C -0.066 4.066 15 N -0.984 5.984 16 Si 0.955 3.045 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.255 1.255 20 C -0.115 4.115 21 C -0.139 4.139 22 C -0.167 4.167 23 C -0.167 4.167 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.414 0.586 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.688 -18.050 -13.583 32.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.262 4.262 4 C 0.327 3.673 5 O -0.461 6.461 6 N -0.357 5.357 7 C 0.024 3.976 8 C -0.183 4.183 9 C -0.136 4.136 10 C 0.041 3.959 11 N -0.406 5.406 12 C -0.365 4.365 13 H 0.076 0.924 14 C -0.257 4.257 15 N -0.635 5.635 16 Si 0.782 3.218 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.180 1.180 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.204 4.204 23 C -0.204 4.204 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.251 0.749 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.198 0.802 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.282 -18.532 -13.420 32.644 hybrid contribution 1.008 0.031 0.856 1.322 sum -22.275 -18.501 -12.565 31.565 Atomic orbital electron populations 1.21090 0.88512 1.04381 1.04267 1.22137 0.96922 0.92492 0.88642 1.22505 0.91843 1.00255 1.11556 1.19148 0.89120 0.83143 0.75912 1.90733 1.72071 1.32843 1.50492 1.45849 1.07205 1.10637 1.72015 1.22313 0.80151 0.99192 0.95923 1.23516 0.97943 0.99629 0.97166 1.22543 0.97579 0.95775 0.97692 1.20770 0.91140 0.95004 0.89005 1.42779 1.52012 1.03993 1.41780 1.19079 1.18443 0.86775 1.12249 0.92415 1.25514 1.00484 1.00263 0.99438 1.69880 1.36992 1.27196 1.29407 0.85401 0.78878 0.80338 0.77135 1.20278 1.22151 1.18000 1.23218 0.97313 0.97763 0.97028 1.21418 1.00421 0.89767 1.04134 1.23229 0.99970 0.97217 0.99968 1.22824 1.02885 1.02774 0.91940 0.88673 0.90004 0.89634 0.82547 0.74868 0.88330 0.89770 0.92918 0.89149 0.95428 0.95517 0.80247 0.93313 0.89280 0.87796 0.87847 0.86410 0.88219 0.89739 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.49 71.24 0.68 -0.34 16 2 C 0.00 0.00 5.80 -17.61 -0.10 -0.10 16 3 C -0.24 -4.01 9.62 23.43 0.23 -3.78 16 4 C 0.54 12.54 7.67 86.57 0.66 13.21 16 5 O -0.58 -17.95 12.92 -4.06 -0.05 -18.00 16 6 N -0.71 -13.96 5.36 -443.64 -2.38 -16.34 16 7 C 0.13 3.00 4.21 45.52 0.19 3.19 16 8 C -0.14 -3.98 7.45 31.18 0.23 -3.75 16 9 C -0.12 -3.32 3.75 -10.21 -0.04 -3.36 16 10 C 0.17 6.23 6.10 86.38 0.53 6.76 16 11 N -0.76 -36.40 5.41 -343.45 -1.86 -38.26 16 12 C -0.23 -13.70 10.47 84.03 0.88 -12.82 16 13 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 14 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 15 N -0.98 -64.19 13.97 21.65 0.30 -63.89 16 16 Si 0.96 46.81 27.74 68.60 1.90 48.71 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 19 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 20 C -0.11 -2.36 7.39 31.12 0.23 -2.13 16 21 C -0.14 -2.71 4.35 -11.54 -0.05 -2.76 16 22 C -0.17 -2.28 9.79 30.60 0.30 -1.98 16 23 C -0.17 -3.04 10.23 30.59 0.31 -2.73 16 24 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 0.55 6.37 -2.39 -0.02 0.54 16 26 H 0.08 0.52 8.07 -2.39 -0.02 0.50 16 27 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.41 5.67 8.69 -92.71 -0.81 4.86 16 29 H 0.10 2.59 7.50 -2.39 -0.02 2.57 16 30 H 0.08 2.35 7.90 -2.39 -0.02 2.34 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.03 1.01 7.85 -2.39 -0.02 0.99 16 35 H 0.36 16.84 5.53 -92.71 -0.51 16.33 16 36 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.10 1.82 8.07 -2.38 -0.02 1.80 16 39 H 0.10 2.66 6.22 -2.39 -0.01 2.64 16 40 H 0.12 1.07 6.31 -2.38 -0.02 1.06 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.20 350.05 2.07 -73.14 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.37 Total: 28.74 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.52 Total: -14.10 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -3.93 Total: -118.48 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -75.20 2.07 -73.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328829072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.130 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds