Wall clock time and date at job start Tue Mar 31 2020 00:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32988 * 120.00589 * 2 1 4 4 C 1.47113 * 119.99619 * 353.10772 * 3 2 1 5 5 O 1.21615 * 119.99683 * 353.76481 * 4 3 2 6 6 N 1.34771 * 119.99967 * 173.76866 * 4 3 2 7 7 C 1.46496 * 119.99863 * 179.97438 * 6 4 3 8 8 C 1.53781 * 113.69109 * 105.93680 * 7 6 4 9 9 C 1.53782 * 87.08353 * 139.99090 * 8 7 6 10 10 C 1.53000 * 113.61383 * 220.01732 * 9 8 7 11 11 N 1.46498 * 109.47370 * 272.50039 * 10 9 8 12 12 C 1.36937 * 120.00226 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99691 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00180 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99932 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46726 * 90.00510 * 16 14 12 18 18 H 1.48493 * 109.47314 * 210.00479 * 16 14 12 19 19 H 1.48500 * 109.47334 * 330.00623 * 16 14 12 20 20 C 1.53783 * 87.07847 * 334.56613 * 9 8 7 21 21 C 1.50705 * 119.99958 * 180.02562 * 2 1 3 22 22 C 1.53003 * 117.49700 * 8.74908 * 21 2 1 23 23 C 1.52999 * 117.49949 * 300.08825 * 21 2 1 24 24 H 1.08998 * 109.47162 * 84.53604 * 1 2 3 25 25 H 1.09003 * 109.47050 * 204.53793 * 1 2 3 26 26 H 1.08999 * 109.46726 * 324.53144 * 1 2 3 27 27 H 1.07995 * 120.00861 * 173.10210 * 3 2 1 28 28 H 0.97008 * 120.00190 * 359.97438 * 6 4 3 29 29 H 1.08996 * 112.85405 * 334.66390 * 7 6 4 30 30 H 1.09004 * 113.61571 * 254.54132 * 8 7 6 31 31 H 1.09002 * 113.61385 * 25.44364 * 8 7 6 32 32 H 1.09001 * 113.68759 * 89.12789 * 9 8 7 33 33 H 1.09003 * 109.47356 * 32.49756 * 10 9 8 34 34 H 1.08999 * 109.47345 * 152.49578 * 10 9 8 35 35 H 0.97001 * 120.00255 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99640 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61502 * 270.87712 * 20 9 8 38 38 H 1.09004 * 113.60849 * 139.97981 * 20 9 8 39 39 H 1.09003 * 115.54967 * 154.41567 * 21 2 1 40 40 H 1.09002 * 117.49700 * 359.97438 * 22 21 2 41 41 H 1.08997 * 117.49911 * 145.02330 * 22 21 2 42 42 H 1.09003 * 117.49769 * 214.98132 * 23 21 2 43 43 H 1.09006 * 117.50101 * 359.97303 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4445 2.4211 -0.1529 5 8 0.2522 2.4135 -0.3925 6 7 2.0993 3.5924 -0.0275 7 6 1.3749 4.8565 -0.1804 8 6 1.1294 5.5924 1.1474 9 6 1.4462 6.8948 0.3936 10 6 2.2840 7.8846 1.2055 11 7 1.3978 8.7308 2.0085 12 6 1.9259 9.6983 2.8211 13 1 2.9958 9.8372 2.8703 14 6 1.0862 10.4997 3.5823 15 7 1.5939 11.4292 4.3637 16 14 -0.7643 10.2590 3.4977 17 1 -1.1826 9.2727 4.5261 18 1 -1.4441 11.5550 3.7493 19 1 -1.1372 9.7578 2.1505 20 6 2.2751 6.0381 -0.5781 21 6 2.2605 -1.3052 -0.0006 22 6 1.4520 -2.5875 -0.2076 23 6 2.0245 -2.2577 1.1732 24 1 -0.3633 0.0979 -1.0230 25 1 -0.3633 -0.9349 0.4268 26 1 -0.3633 0.8370 0.5963 27 1 3.2461 1.1551 0.1123 28 1 3.0503 3.5984 0.1639 29 1 0.4819 4.7607 -0.7980 30 1 0.0989 5.5300 1.4972 31 1 1.8560 5.3487 1.9225 32 1 0.5735 7.3573 -0.0675 33 1 2.9574 7.3361 1.8641 34 1 2.8668 8.5087 0.5281 35 1 0.4368 8.6064 1.9640 36 1 1.0070 11.9895 4.8954 37 1 3.3149 5.9164 -0.2748 38 1 2.1695 6.3356 -1.6214 39 1 3.2637 -1.2686 -0.4253 40 1 0.3751 -2.4872 -0.3429 41 1 1.9235 -3.3948 -0.7680 42 1 2.8724 -2.8480 1.5206 43 1 1.3245 -1.9402 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328829076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:21 Heat of formation + Delta-G solvation = 33.741324 kcal Electronic energy + Delta-G solvation = -20736.174591 eV Core-core repulsion = 17590.426566 eV Total energy + Delta-G solvation = -3145.748024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.27570 -38.91677 -37.93744 -34.73216 -33.39270 -33.30464 -31.14950 -28.24602 -27.00742 -25.57905 -24.67313 -22.88854 -22.77026 -21.40492 -20.56721 -19.68497 -18.62506 -17.56219 -17.09301 -16.54675 -15.75562 -15.21278 -15.17596 -14.80819 -14.40922 -13.96035 -13.56397 -13.52757 -13.27216 -13.02292 -12.66185 -12.34557 -12.28240 -11.93132 -11.92853 -11.75330 -11.69223 -11.45095 -11.30373 -10.91428 -10.87917 -10.75490 -10.26086 -10.21244 -9.94627 -9.62073 -9.55606 -9.29349 -8.90148 -8.82500 -7.19224 -5.74489 -3.09342 1.08606 3.10306 3.16470 3.40379 3.43840 3.47834 3.50123 4.17056 4.40321 4.47433 4.61303 4.61686 4.61967 4.71518 4.80012 4.95003 4.99511 5.04176 5.17139 5.32839 5.42170 5.54026 5.55161 5.62739 5.63718 5.67464 5.76538 5.82307 5.85120 5.86553 5.95950 6.11850 6.20651 6.24069 6.25230 6.34804 6.59932 6.71260 6.83702 7.50157 8.02268 8.19931 8.44968 9.24638 9.97309 10.17646 11.44043 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.002650 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.781226 B =10561.841279 C =10760.422130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.229 4.229 4 C 0.545 3.455 5 O -0.543 6.543 6 N -0.715 5.715 7 C 0.119 3.881 8 C -0.141 4.141 9 C -0.116 4.116 10 C 0.170 3.830 11 N -0.756 5.756 12 C -0.243 4.243 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.166 4.166 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -27.765 -11.454 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.250 4.250 4 C 0.335 3.665 5 O -0.423 6.423 6 N -0.364 5.364 7 C 0.015 3.985 8 C -0.180 4.180 9 C -0.136 4.136 10 C 0.043 3.957 11 N -0.401 5.401 12 C -0.373 4.373 13 H 0.107 0.893 14 C -0.193 4.193 15 N -0.584 5.584 16 Si 0.716 3.284 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.174 4.174 21 C -0.153 4.153 22 C -0.209 4.209 23 C -0.203 4.203 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.235 0.765 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.505 -27.605 -11.513 29.948 hybrid contribution -0.651 0.052 0.182 0.678 sum 0.854 -27.554 -11.332 29.805 Atomic orbital electron populations 1.21183 0.90769 1.02496 1.03747 1.21782 0.96173 0.92324 0.89955 1.22301 1.00301 0.91919 1.10473 1.18536 0.86971 0.84316 0.76708 1.90753 1.15084 1.87659 1.48854 1.45939 1.12646 1.05550 1.72294 1.22610 0.96505 0.80922 0.98494 1.23489 1.02520 0.95281 0.96705 1.22590 0.99455 0.94725 0.96803 1.20581 0.92242 0.90801 0.92123 1.42711 1.04197 1.40882 1.52333 1.19073 0.94093 1.08054 1.16094 0.89290 1.24682 0.97458 0.98140 0.99054 1.69706 1.33990 1.23609 1.31059 0.86525 0.87131 0.77093 0.77672 1.21088 1.21757 1.20302 1.23316 0.99202 0.94923 0.99999 1.21299 1.00185 0.88800 1.04984 1.23088 1.00532 0.97601 0.99689 1.23009 1.03758 1.01864 0.91707 0.90192 0.92680 0.88936 0.85641 0.76538 0.87063 0.91365 0.89553 0.89027 0.95503 0.95526 0.80643 0.93101 0.89493 0.90934 0.86601 0.87954 0.88251 0.88159 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 7.90 36.00 0.28 -0.95 16 2 C 0.00 0.00 5.81 -101.17 -0.59 -0.59 16 3 C -0.23 -2.16 9.67 -37.80 -0.37 -2.53 16 4 C 0.54 6.61 7.61 -12.66 -0.10 6.51 16 5 O -0.54 -8.28 12.90 5.26 0.07 -8.21 16 6 N -0.71 -7.66 5.36 -54.20 -0.29 -7.95 16 7 C 0.12 1.46 4.22 -67.12 -0.28 1.18 16 8 C -0.14 -2.01 7.43 -25.92 -0.19 -2.20 16 9 C -0.12 -1.74 3.76 -89.81 -0.34 -2.08 16 10 C 0.17 3.26 6.10 -4.04 -0.02 3.23 16 11 N -0.76 -18.31 5.41 -59.91 -0.32 -18.64 16 12 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 13 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 14 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 15 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 16 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 17 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 19 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 20 C -0.14 -1.57 7.39 -25.92 -0.19 -1.76 16 21 C -0.13 -0.91 6.00 -91.77 -0.55 -1.46 16 22 C -0.17 -0.98 9.77 -26.69 -0.26 -1.24 16 23 C -0.17 -0.97 10.10 -26.69 -0.27 -1.24 16 24 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 25 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 26 H 0.09 1.12 6.12 -51.93 -0.32 0.80 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.40 3.26 8.70 -40.82 -0.35 2.91 16 29 H 0.11 1.49 7.50 -51.93 -0.39 1.10 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.03 0.52 7.84 -51.93 -0.41 0.11 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.36 8.58 5.53 -40.82 -0.23 8.35 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.59 6.42 -51.93 -0.33 0.25 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -33.70 349.83 -9.34 -43.05 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.00 Total: 7.98 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.13 Total: -10.34 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.16 Total: -55.64 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.70 -9.34 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328829076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.788 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds