Wall clock time and date at job start Tue Mar 31 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32988 * 120.00589 * 2 1 4 4 C 1.47113 * 119.99619 * 353.10772 * 3 2 1 5 5 O 1.21615 * 119.99683 * 353.76481 * 4 3 2 6 6 N 1.34771 * 119.99967 * 173.76866 * 4 3 2 7 7 C 1.46496 * 119.99863 * 179.97438 * 6 4 3 8 8 C 1.53781 * 113.69109 * 105.93680 * 7 6 4 9 9 C 1.53782 * 87.08353 * 139.99090 * 8 7 6 10 10 C 1.53000 * 113.61383 * 220.01732 * 9 8 7 11 11 N 1.46498 * 109.47370 * 272.50039 * 10 9 8 12 12 C 1.36937 * 120.00226 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99691 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00180 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99932 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46726 * 90.00510 * 16 14 12 18 18 H 1.48493 * 109.47314 * 210.00479 * 16 14 12 19 19 H 1.48500 * 109.47334 * 330.00623 * 16 14 12 20 20 C 1.53783 * 87.07847 * 334.56613 * 9 8 7 21 21 C 1.50705 * 119.99958 * 180.02562 * 2 1 3 22 22 C 1.53003 * 117.49700 * 8.74908 * 21 2 1 23 23 C 1.52999 * 117.49949 * 300.08825 * 21 2 1 24 24 H 1.08998 * 109.47162 * 84.53604 * 1 2 3 25 25 H 1.09003 * 109.47050 * 204.53793 * 1 2 3 26 26 H 1.08999 * 109.46726 * 324.53144 * 1 2 3 27 27 H 1.07995 * 120.00861 * 173.10210 * 3 2 1 28 28 H 0.97008 * 120.00190 * 359.97438 * 6 4 3 29 29 H 1.08996 * 112.85405 * 334.66390 * 7 6 4 30 30 H 1.09004 * 113.61571 * 254.54132 * 8 7 6 31 31 H 1.09002 * 113.61385 * 25.44364 * 8 7 6 32 32 H 1.09001 * 113.68759 * 89.12789 * 9 8 7 33 33 H 1.09003 * 109.47356 * 32.49756 * 10 9 8 34 34 H 1.08999 * 109.47345 * 152.49578 * 10 9 8 35 35 H 0.97001 * 120.00255 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99640 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61502 * 270.87712 * 20 9 8 38 38 H 1.09004 * 113.60849 * 139.97981 * 20 9 8 39 39 H 1.09003 * 115.54967 * 154.41567 * 21 2 1 40 40 H 1.09002 * 117.49700 * 359.97438 * 22 21 2 41 41 H 1.08997 * 117.49911 * 145.02330 * 22 21 2 42 42 H 1.09003 * 117.49769 * 214.98132 * 23 21 2 43 43 H 1.09006 * 117.50101 * 359.97303 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4445 2.4211 -0.1529 5 8 0.2522 2.4135 -0.3925 6 7 2.0993 3.5924 -0.0275 7 6 1.3749 4.8565 -0.1804 8 6 1.1294 5.5924 1.1474 9 6 1.4462 6.8948 0.3936 10 6 2.2840 7.8846 1.2055 11 7 1.3978 8.7308 2.0085 12 6 1.9259 9.6983 2.8211 13 1 2.9958 9.8372 2.8703 14 6 1.0862 10.4997 3.5823 15 7 1.5939 11.4292 4.3637 16 14 -0.7643 10.2590 3.4977 17 1 -1.1826 9.2727 4.5261 18 1 -1.4441 11.5550 3.7493 19 1 -1.1372 9.7578 2.1505 20 6 2.2751 6.0381 -0.5781 21 6 2.2605 -1.3052 -0.0006 22 6 1.4520 -2.5875 -0.2076 23 6 2.0245 -2.2577 1.1732 24 1 -0.3633 0.0979 -1.0230 25 1 -0.3633 -0.9349 0.4268 26 1 -0.3633 0.8370 0.5963 27 1 3.2461 1.1551 0.1123 28 1 3.0503 3.5984 0.1639 29 1 0.4819 4.7607 -0.7980 30 1 0.0989 5.5300 1.4972 31 1 1.8560 5.3487 1.9225 32 1 0.5735 7.3573 -0.0675 33 1 2.9574 7.3361 1.8641 34 1 2.8668 8.5087 0.5281 35 1 0.4368 8.6064 1.9640 36 1 1.0070 11.9895 4.8954 37 1 3.3149 5.9164 -0.2748 38 1 2.1695 6.3356 -1.6214 39 1 3.2637 -1.2686 -0.4253 40 1 0.3751 -2.4872 -0.3429 41 1 1.9235 -3.3948 -0.7680 42 1 2.8724 -2.8480 1.5206 43 1 1.3245 -1.9402 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328829076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:20 Heat of formation + Delta-G solvation = 12.041372 kcal Electronic energy + Delta-G solvation = -20737.115571 eV Core-core repulsion = 17590.426566 eV Total energy + Delta-G solvation = -3146.689005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.23768 -39.85310 -38.65084 -36.49388 -34.56332 -34.09347 -33.18944 -29.31901 -28.35424 -26.63949 -25.63331 -24.40665 -23.22665 -22.79225 -21.52963 -20.86206 -19.55245 -19.32808 -17.98234 -17.30366 -16.81934 -16.52731 -16.11421 -16.04529 -15.74066 -15.34332 -14.86584 -14.75811 -14.49259 -13.97787 -13.95946 -13.63961 -13.36947 -13.14316 -13.01637 -12.87672 -12.75339 -12.47153 -12.24758 -12.14057 -11.97899 -11.86553 -11.84391 -11.44036 -11.33633 -11.29574 -10.94451 -10.55315 -10.10985 -9.69447 -9.28761 -8.04209 -5.36879 0.34382 1.36720 1.39523 1.46962 2.25844 2.31161 2.47008 3.01089 3.27034 3.47475 3.55487 3.60876 3.85315 3.87870 3.91322 3.96483 4.07358 4.11752 4.15503 4.30491 4.54720 4.61287 4.68016 4.74884 4.81188 4.81941 4.87095 4.94683 4.99279 4.99351 5.08356 5.14089 5.14851 5.22901 5.25229 5.42627 5.53332 5.56204 5.68637 5.75139 6.20512 6.66861 7.07242 7.32707 7.84939 8.03132 9.17374 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.002650 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.781226 B =10561.841279 C =10760.422130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.001 3.999 3 C -0.237 4.237 4 C 0.537 3.463 5 O -0.582 6.582 6 N -0.705 5.705 7 C 0.129 3.871 8 C -0.144 4.144 9 C -0.116 4.116 10 C 0.166 3.834 11 N -0.760 5.760 12 C -0.234 4.234 13 H 0.058 0.942 14 C -0.066 4.066 15 N -0.984 5.984 16 Si 0.955 3.045 17 H -0.280 1.280 18 H -0.294 1.294 19 H -0.253 1.253 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.170 4.170 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.415 0.585 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -30.162 -12.739 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.001 4.001 3 C -0.258 4.258 4 C 0.329 3.671 5 O -0.465 6.465 6 N -0.355 5.355 7 C 0.023 3.977 8 C -0.183 4.183 9 C -0.136 4.136 10 C 0.040 3.960 11 N -0.405 5.405 12 C -0.365 4.365 13 H 0.076 0.924 14 C -0.258 4.258 15 N -0.634 5.634 16 Si 0.783 3.217 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.177 1.177 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.206 4.206 23 C -0.200 4.200 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.252 0.748 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.198 0.802 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.752 -30.042 -12.833 32.715 hybrid contribution -0.640 0.752 0.588 1.149 sum 1.112 -29.289 -12.245 31.766 Atomic orbital electron populations 1.21089 0.91850 1.02243 1.02765 1.21992 0.95723 0.93561 0.88845 1.22392 1.01489 0.90573 1.11335 1.19048 0.86681 0.85408 0.76004 1.90743 1.16817 1.88226 1.50675 1.45824 1.13292 1.04719 1.71703 1.22337 0.96604 0.81807 0.96914 1.23498 1.01709 0.95447 0.97607 1.22506 0.99586 0.93980 0.97506 1.20775 0.92314 0.90948 0.91920 1.42772 1.05017 1.40543 1.52217 1.19079 0.92859 1.08547 1.16055 0.92430 1.25523 1.02753 0.98250 0.99234 1.69883 1.35831 1.25135 1.32600 0.85400 0.80647 0.76858 0.78844 1.20588 1.22074 1.17739 1.23231 0.99387 0.92739 1.00026 1.21353 1.00749 0.87844 1.06162 1.23183 1.00400 0.97301 0.99761 1.23084 1.04129 1.01350 0.91465 0.91140 0.90968 0.91565 0.82869 0.74810 0.88178 0.92675 0.89713 0.89185 0.95424 0.95542 0.80233 0.93327 0.87804 0.89281 0.85142 0.88321 0.86716 0.86637 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 7.90 71.23 0.56 -1.82 16 2 C 0.00 0.01 5.81 -17.62 -0.10 -0.09 16 3 C -0.24 -4.06 9.67 23.43 0.23 -3.83 16 4 C 0.54 12.49 7.61 86.57 0.66 13.15 16 5 O -0.58 -17.81 12.90 -4.08 -0.05 -17.86 16 6 N -0.71 -13.80 5.36 -443.64 -2.38 -16.18 16 7 C 0.13 2.93 4.22 45.52 0.19 3.12 16 8 C -0.14 -3.91 7.43 31.12 0.23 -3.68 16 9 C -0.12 -3.29 3.76 -10.27 -0.04 -3.32 16 10 C 0.17 6.19 6.10 86.38 0.53 6.72 16 11 N -0.76 -36.27 5.41 -343.45 -1.86 -38.12 16 12 C -0.23 -13.68 10.47 84.03 0.88 -12.80 16 13 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 14 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 15 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 16 Si 0.96 46.70 27.74 68.60 1.90 48.60 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 20 C -0.12 -2.35 7.39 31.12 0.23 -2.12 16 21 C -0.14 -1.59 6.00 -11.54 -0.07 -1.66 16 22 C -0.17 -1.53 9.77 30.62 0.30 -1.23 16 23 C -0.16 -1.51 10.10 30.62 0.31 -1.20 16 24 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 25 H 0.07 1.08 6.31 -2.39 -0.02 1.07 16 26 H 0.07 1.65 6.12 -2.39 -0.01 1.64 16 27 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.41 5.64 8.70 -92.70 -0.81 4.83 16 29 H 0.10 2.58 7.50 -2.39 -0.02 2.56 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.08 2.33 7.90 -2.39 -0.02 2.31 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.03 1.04 7.84 -2.39 -0.02 1.02 16 34 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.36 16.76 5.53 -92.71 -0.51 16.25 16 36 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.10 1.80 8.07 -2.39 -0.02 1.79 16 38 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 0.96 6.42 -2.39 -0.02 0.94 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -74.05 349.83 1.92 -72.13 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.37 Total: 27.53 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.37 Total: -12.28 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -3.93 Total: -118.11 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.90 Total: 48.60 kcal Total: -74.05 1.92 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328829076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.166 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds