Wall clock time and date at job start Tue Mar 31 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35739 * 117.00149 * 2 1 4 4 C 1.39293 * 120.84461 * 359.97438 * 3 2 1 5 5 C 1.37946 * 119.09076 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82597 * 0.02562 * 5 4 3 7 7 C 1.31948 * 121.86111 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.58754 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46887 * 248.24715 * 8 7 6 10 10 C 1.46904 * 110.99806 * 201.36247 * 9 8 7 11 11 C 1.50697 * 109.46825 * 169.99723 * 10 9 8 12 12 H 1.08000 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00105 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00181 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99690 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47184 * 90.00327 * 15 13 11 17 17 H 1.48498 * 109.46963 * 210.00013 * 15 13 11 18 18 H 1.48505 * 109.47296 * 330.00319 * 15 13 11 19 19 C 1.46902 * 111.00335 * 77.41113 * 9 8 7 20 20 C 1.53002 * 109.46571 * 286.45473 * 19 9 8 21 21 C 1.53005 * 109.46884 * 178.83438 * 20 19 9 22 22 C 1.53000 * 109.47489 * 298.83277 * 20 19 9 23 23 C 1.37987 * 120.82185 * 0.26841 * 7 6 5 24 24 H 1.09001 * 109.46925 * 60.00465 * 1 2 3 25 25 H 1.09007 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47770 * 300.00230 * 1 2 3 27 27 H 1.07996 * 120.45106 * 0.03069 * 4 3 2 28 28 H 1.07997 * 119.58792 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47754 * 128.24487 * 8 7 6 30 30 H 1.09002 * 109.47145 * 8.23817 * 8 7 6 31 31 H 1.08997 * 109.47466 * 289.99405 * 10 9 8 32 32 H 1.08998 * 109.47328 * 50.00104 * 10 9 8 33 33 H 0.97003 * 119.99741 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46987 * 166.45603 * 19 9 8 35 35 H 1.08992 * 109.47115 * 46.45380 * 19 9 8 36 36 H 1.09002 * 109.47379 * 58.84161 * 20 19 9 37 37 H 1.09002 * 109.46949 * 59.99873 * 21 20 19 38 38 H 1.08999 * 109.47179 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.46906 * 300.00170 * 21 20 19 40 40 H 1.09003 * 109.46834 * 60.00115 * 22 20 19 41 41 H 1.08999 * 109.47153 * 180.02562 * 22 20 19 42 42 H 1.09002 * 109.47053 * 300.00562 * 22 20 19 43 43 H 1.08009 * 120.45096 * 179.70699 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0230 2.5510 -0.0021 8 6 5.5256 2.6651 -0.0021 9 7 6.0527 2.1910 -1.2887 10 6 7.4656 1.8067 -1.1693 11 6 7.9023 1.1017 -2.4276 12 1 7.2005 0.9535 -3.2350 13 6 9.1977 0.6448 -2.5477 14 7 9.5787 0.0291 -3.6455 15 14 10.4114 0.9004 -1.1509 16 1 10.3518 -0.2591 -0.2249 17 1 11.7842 1.0221 -1.7041 18 1 10.0631 2.1414 -0.4133 19 6 5.8692 3.2027 -2.3379 20 6 4.3934 3.2613 -2.7371 21 6 4.1974 4.3353 -3.8092 22 6 3.9606 1.9026 -3.2914 23 6 3.4345 1.3029 -0.0077 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2244 2.3566 -0.0005 28 1 1.4007 4.5173 -0.0011 29 1 5.9362 2.0580 0.8047 30 1 5.8109 3.7067 0.1457 31 1 8.0738 2.6992 -1.0232 32 1 7.5897 1.1388 -0.3169 33 1 10.4902 -0.2919 -3.7301 34 1 6.4707 2.9376 -3.2074 35 1 6.1830 4.1766 -1.9623 36 1 3.7899 3.5062 -1.8631 37 1 4.8009 4.0905 -4.6832 38 1 3.1460 4.3774 -4.0933 39 1 4.5058 5.3034 -3.4143 40 1 4.1002 1.1375 -2.5277 41 1 2.9093 1.9445 -3.5763 42 1 4.5641 1.6578 -4.1655 43 1 4.0432 0.4107 -0.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329140157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:41 Heat of formation + Delta-G solvation = 6.106610 kcal Electronic energy + Delta-G solvation = -22641.611195 eV Core-core repulsion = 19494.664839 eV Total energy + Delta-G solvation = -3146.946356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.69264 -38.64095 -37.07661 -34.03376 -32.61329 -31.46517 -31.36130 -28.23727 -27.47640 -26.57597 -26.10472 -24.04355 -23.22114 -21.42751 -20.45003 -19.30795 -17.97352 -16.97684 -16.68054 -15.96832 -15.57293 -15.40084 -14.73871 -14.59526 -14.19368 -13.94057 -13.59180 -13.50696 -13.25929 -13.00759 -12.52966 -12.30648 -12.20699 -11.79511 -11.74433 -11.66926 -11.39794 -11.16892 -10.99359 -10.74973 -10.49817 -10.34184 -10.03281 -9.86259 -9.79014 -9.38832 -9.26096 -8.76006 -8.64986 -8.53981 -7.37971 -6.02546 -3.99571 1.23573 1.47348 3.07655 3.30327 3.38057 3.39762 3.87465 4.39015 4.44184 4.65159 4.87292 4.92712 4.94545 5.03025 5.24839 5.29977 5.32430 5.41966 5.51167 5.57571 5.71131 5.80635 5.92040 5.95236 6.07432 6.16075 6.19094 6.24580 6.37771 6.42684 6.50002 6.59463 6.65129 6.71338 6.83872 7.00240 7.04509 7.13633 7.22382 7.60545 7.92047 8.03657 8.21575 8.67599 9.07503 9.59102 11.10450 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.005135 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.085413 B = 5451.721210 C = 5825.209001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.164 3.836 4 C -0.272 4.272 5 C 0.130 3.870 6 N -0.503 5.503 7 C 0.189 3.811 8 C 0.092 3.908 9 N -0.518 5.518 10 C 0.162 3.838 11 C -0.506 4.506 12 H 0.083 0.917 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.267 1.267 19 C 0.069 3.931 20 C -0.113 4.113 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.174 4.174 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.051 0.949 31 H -0.010 1.010 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.050 0.950 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 5.030 7.539 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.110 3.890 4 C -0.294 4.294 5 C -0.027 4.027 6 N -0.217 5.217 7 C 0.054 3.946 8 C -0.037 4.037 9 N -0.242 5.242 10 C 0.037 3.963 11 C -0.544 4.544 12 H 0.101 0.899 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.700 3.300 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.192 1.192 19 C -0.059 4.059 20 C -0.132 4.132 21 C -0.198 4.198 22 C -0.189 4.189 23 C -0.195 4.195 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.504 5.079 7.320 19.641 hybrid contribution 0.394 0.029 0.808 0.899 sum -17.110 5.108 8.128 19.619 Atomic orbital electron populations 1.23076 0.78310 1.04039 1.01363 1.86092 1.21436 1.26629 1.88002 1.19343 0.92487 0.84293 0.92836 1.22072 1.00999 0.93445 1.12846 1.22401 0.90192 0.96674 0.93463 1.67549 1.06727 1.32242 1.15163 1.21036 0.96599 0.87084 0.89905 1.21040 0.87883 1.00074 0.94664 1.61852 1.20967 1.38910 1.02488 1.20214 0.82804 0.94746 0.98582 1.21014 0.96639 1.35817 1.00969 0.89943 1.24879 0.97991 0.94873 0.95497 1.69892 1.18282 1.39237 1.26511 0.86903 0.80948 0.79103 0.83038 1.20191 1.21305 1.19220 1.22131 0.95600 0.91849 0.96274 1.21543 0.97608 0.95167 0.98900 1.21755 1.00407 0.98557 0.99103 1.21666 0.98059 0.97630 1.01533 1.21271 0.91388 1.00432 1.06368 0.92507 0.88131 0.92666 0.85009 0.83055 0.89577 0.93066 0.99215 0.95658 0.92719 0.89293 0.96074 0.89665 0.92930 0.93675 0.93392 0.91254 0.95318 0.93116 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.84 101.05 0.99 1.21 16 2 O -0.31 -3.97 10.51 -18.92 -0.20 -4.17 16 3 C 0.16 2.25 6.74 -38.82 -0.26 1.99 16 4 C -0.27 -3.17 9.11 -39.30 -0.36 -3.53 16 5 C 0.13 1.61 11.02 -17.59 -0.19 1.42 16 6 N -0.50 -7.63 8.35 -9.55 -0.08 -7.71 16 7 C 0.19 3.04 4.15 -82.64 -0.34 2.70 16 8 C 0.09 1.62 5.28 -4.98 -0.03 1.59 16 9 N -0.52 -10.61 3.69 -237.52 -0.88 -11.49 16 10 C 0.16 3.84 3.77 -4.97 -0.02 3.82 16 11 C -0.51 -14.08 8.82 -34.44 -0.30 -14.39 16 12 H 0.08 2.51 7.52 -52.49 -0.39 2.12 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 15 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 19 C 0.07 1.38 4.24 -3.82 -0.02 1.36 16 20 C -0.11 -1.97 2.47 -90.62 -0.22 -2.19 16 21 C -0.14 -2.15 9.19 37.16 0.34 -1.81 16 22 C -0.13 -2.37 9.01 37.16 0.33 -2.03 16 23 C -0.17 -2.71 8.46 -39.30 -0.33 -3.05 16 24 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 25 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.05 0.36 7.71 -51.93 -0.40 -0.04 16 27 H 0.13 1.13 6.47 -52.49 -0.34 0.79 16 28 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 30 H 0.05 0.89 7.70 -51.93 -0.40 0.49 16 31 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 32 H 0.03 0.59 7.24 -51.93 -0.38 0.21 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.09 2.00 6.58 -51.93 -0.34 1.66 16 35 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 36 H 0.09 1.46 3.64 -51.93 -0.19 1.27 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.35 6.34 -51.93 -0.33 1.02 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.15 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -31.01 339.12 -7.34 -38.35 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.90 Total: 0.94 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.50 Total: -11.02 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.18 Total: -45.82 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.20 Total: -4.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.01 -7.34 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329140157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.455 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds